Wall clock time and date at job start Mon Mar 30 2020 06:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37938 * 120.07672 * 2 1 4 4 C 1.38364 * 120.15559 * 180.29919 * 3 2 1 5 5 C 1.38367 * 120.31475 * 359.69772 * 4 3 2 6 6 C 1.37929 * 120.15711 * 0.04726 * 5 4 3 7 7 C 1.50702 * 120.08007 * 179.97438 * 6 5 4 8 8 C 1.39676 * 120.08370 * 179.76426 * 2 1 3 9 9 C 1.47500 * 120.15300 * 0.02562 * 8 2 1 10 10 N 1.29742 * 119.99578 * 173.80563 * 9 8 2 11 11 N 1.40101 * 119.99531 * 179.97438 * 10 9 8 12 12 C 1.46505 * 119.99940 * 180.02562 * 11 10 9 13 13 H 1.08995 * 109.46763 * 329.99938 * 12 11 10 14 14 C 1.52999 * 109.47257 * 89.99997 * 12 11 10 15 15 C 1.50697 * 109.46957 * 210.00092 * 12 11 10 16 16 H 1.08001 * 120.00525 * 354.91966 * 15 12 11 17 17 C 1.37880 * 119.99624 * 174.91865 * 15 12 11 18 18 N 1.31506 * 120.00263 * 354.53882 * 17 15 12 19 19 Si 1.86803 * 119.99702 * 174.80752 * 17 15 12 20 20 H 1.48500 * 109.47458 * 264.76419 * 19 17 15 21 21 H 1.48499 * 109.46930 * 24.76837 * 19 17 15 22 22 H 1.48505 * 109.47063 * 144.76357 * 19 17 15 23 23 H 1.09004 * 109.47057 * 264.57520 * 1 2 3 24 24 H 1.08996 * 109.47424 * 24.57978 * 1 2 3 25 25 H 1.09004 * 109.46913 * 144.57979 * 1 2 3 26 26 H 1.08003 * 119.91847 * 359.97438 * 3 2 1 27 27 H 1.08001 * 119.84132 * 179.72501 * 4 3 2 28 28 H 1.08007 * 119.92050 * 180.02562 * 5 4 3 29 29 H 1.09001 * 109.46957 * 263.79269 * 7 6 5 30 30 H 1.09001 * 109.47355 * 23.79166 * 7 6 5 31 31 H 1.09000 * 109.47269 * 143.79452 * 7 6 5 32 32 H 1.07998 * 120.00058 * 353.80334 * 9 8 2 33 33 H 0.97006 * 120.00251 * 0.02562 * 11 10 9 34 34 H 1.08997 * 109.46947 * 177.59443 * 14 12 11 35 35 H 1.09002 * 109.47114 * 297.59465 * 14 12 11 36 36 H 1.08998 * 109.47075 * 57.59376 * 14 12 11 37 37 H 0.97004 * 120.00275 * 180.27369 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1937 0.0000 4 6 3.5819 1.1956 -0.0062 5 6 4.2820 0.0021 -0.0062 6 6 3.6039 -1.1990 -0.0010 7 6 4.3681 -2.4979 -0.0015 8 6 2.2072 -1.2086 0.0050 9 6 1.4750 -2.4890 0.0097 10 7 2.1227 -3.6071 -0.1070 11 7 1.4273 -4.8233 -0.1020 12 6 2.1587 -6.0859 -0.2331 13 1 3.0588 -5.9244 -0.8263 14 6 2.5479 -6.5965 1.1557 15 6 1.2833 -7.1049 -0.9159 16 1 0.2560 -6.8657 -1.1477 17 6 1.7940 -8.3428 -1.2446 18 7 3.0711 -8.5971 -1.0610 19 14 0.6732 -9.6560 -1.9579 20 1 0.1931 -10.5426 -0.8677 21 1 -0.4891 -9.0094 -2.6183 22 1 1.4248 -10.4600 -2.9550 23 1 -0.3633 -0.0972 1.0231 24 1 -0.3634 0.9345 -0.4274 25 1 -0.3633 -0.8375 -0.5956 26 1 1.6582 2.1289 -0.0004 27 1 4.1180 2.1331 -0.0107 28 1 5.3620 0.0110 -0.0107 29 1 4.4523 -2.8694 -1.0228 30 1 5.3646 -2.3334 0.4085 31 1 3.8402 -3.2303 0.6092 32 1 0.3997 -2.4958 0.1102 33 1 0.4615 -4.8294 -0.0117 34 1 3.0546 -7.5569 1.0608 35 1 3.2157 -5.8790 1.6326 36 1 1.6509 -6.7173 1.7629 37 1 3.4312 -9.4666 -1.2960 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755802618.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:12 Heat of formation + Delta-G solvation = 42.633040 kcal Electronic energy + Delta-G solvation = -17156.128020 eV Core-core repulsion = 14512.296859 eV Total energy + Delta-G solvation = -2643.831161 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.47414 -37.98727 -35.91313 -34.38180 -33.74419 -32.11732 -29.30110 -28.01222 -27.41807 -27.23321 -24.06894 -22.23432 -21.45577 -21.16656 -18.78797 -17.76046 -17.18065 -16.73218 -15.83890 -15.55991 -15.23093 -15.12197 -14.45954 -14.29117 -14.03514 -13.90223 -13.71757 -13.55046 -13.36618 -12.89116 -12.79499 -12.66172 -12.51377 -12.40479 -12.24775 -12.11129 -11.93830 -11.78993 -11.13330 -10.60459 -10.43390 -9.87652 -9.37191 -8.36430 -8.17573 -6.34874 0.14695 0.56776 1.42039 1.42213 1.53094 1.78824 2.19589 2.47235 3.01696 3.10610 3.92403 3.98370 4.04996 4.21681 4.42676 4.52931 4.67303 4.71995 4.74516 4.87980 4.91418 4.92751 4.97769 5.05943 5.09143 5.14121 5.19704 5.36161 5.46947 5.58352 5.65169 5.71326 5.74703 5.83258 5.92039 6.18901 6.21800 6.42767 6.85571 7.36197 7.78086 8.87033 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.037767 B = 0.004587 C = 0.004272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.202959 B = 6102.714308 C = 6552.003942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.075 4.075 3 C -0.131 4.131 4 C -0.111 4.111 5 C -0.139 4.139 6 C -0.077 4.077 7 C -0.109 4.109 8 C -0.054 4.054 9 C 0.016 3.984 10 N -0.225 5.225 11 N -0.645 5.645 12 C 0.308 3.692 13 H 0.004 0.996 14 C -0.131 4.131 15 C -0.548 4.548 16 H 0.060 0.940 17 C 0.020 3.980 18 N -0.916 5.916 19 Si 0.968 3.032 20 H -0.272 1.272 21 H -0.269 1.269 22 H -0.282 1.282 23 H 0.079 0.921 24 H 0.087 0.913 25 H 0.061 0.939 26 H 0.151 0.849 27 H 0.150 0.850 28 H 0.135 0.865 29 H 0.051 0.949 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.120 0.880 33 H 0.371 0.629 34 H 0.054 0.946 35 H 0.021 0.979 36 H 0.034 0.966 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.408 18.195 2.811 18.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.077 4.077 3 C -0.148 4.148 4 C -0.130 4.130 5 C -0.157 4.157 6 C -0.080 4.080 7 C -0.166 4.166 8 C -0.056 4.056 9 C -0.192 4.192 10 N -0.035 5.035 11 N -0.381 5.381 12 C 0.204 3.796 13 H 0.022 0.978 14 C -0.190 4.190 15 C -0.587 4.587 16 H 0.078 0.922 17 C -0.180 4.180 18 N -0.554 5.554 19 Si 0.792 3.208 20 H -0.197 1.197 21 H -0.193 1.193 22 H -0.208 1.208 23 H 0.097 0.903 24 H 0.106 0.894 25 H 0.080 0.920 26 H 0.169 0.831 27 H 0.168 0.832 28 H 0.153 0.847 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.137 0.863 33 H 0.207 0.793 34 H 0.073 0.927 35 H 0.040 0.960 36 H 0.054 0.946 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.289 17.398 2.659 17.648 hybrid contribution -1.385 -1.001 -0.254 1.728 sum -2.675 16.397 2.405 16.787 Atomic orbital electron populations 1.20856 0.89688 1.03593 1.02976 1.20191 0.97132 0.91627 0.98779 1.21237 0.94476 0.97612 1.01507 1.21516 0.94540 0.98363 0.98562 1.21199 1.00646 0.91638 1.02203 1.20240 0.93139 0.96068 0.98515 1.20971 0.98942 0.94852 1.01849 1.18377 0.92356 0.90878 1.04001 1.24113 0.97702 0.90424 1.06981 1.74397 1.27844 0.93597 1.07705 1.48712 1.06388 1.00739 1.82308 1.18089 0.91340 0.78019 0.92186 0.97757 1.21953 0.98741 1.00195 0.98116 1.21518 0.98150 0.98952 1.40073 0.92153 1.25694 0.96408 1.00339 0.95571 1.70065 1.13371 1.23531 1.48402 0.85406 0.78599 0.78593 0.78173 1.19717 1.19307 1.20779 0.90289 0.89394 0.92029 0.83086 0.83190 0.84695 0.93015 0.91579 0.90771 0.86323 0.79263 0.92674 0.95980 0.94647 0.92426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.12 9.33 71.24 0.66 -1.45 16 2 C -0.07 -1.80 5.92 -19.59 -0.12 -1.91 16 3 C -0.13 -2.57 9.67 22.23 0.21 -2.36 16 4 C -0.11 -2.20 10.04 22.33 0.22 -1.97 16 5 C -0.14 -3.41 9.66 22.23 0.21 -3.20 16 6 C -0.08 -2.39 5.92 -19.59 -0.12 -2.51 16 7 C -0.11 -3.76 8.64 71.24 0.62 -3.14 16 8 C -0.05 -1.67 5.87 -20.14 -0.12 -1.79 16 9 C 0.02 0.56 10.06 87.45 0.88 1.44 16 10 N -0.23 -9.45 7.42 -52.16 -0.39 -9.84 16 11 N -0.65 -29.38 6.10 -172.52 -1.05 -30.44 16 12 C 0.31 16.22 3.11 44.24 0.14 16.35 16 13 H 0.00 0.27 8.12 -2.39 -0.02 0.25 16 14 C -0.13 -6.53 9.37 71.98 0.67 -5.85 16 15 C -0.55 -30.07 8.68 25.60 0.22 -29.85 16 16 H 0.06 3.22 7.77 -2.91 -0.02 3.20 16 17 C 0.02 1.11 5.25 84.66 0.44 1.56 16 18 N -0.92 -52.56 11.94 21.45 0.26 -52.31 16 19 Si 0.97 42.85 29.54 68.60 2.03 44.88 16 20 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 21 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 22 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 23 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 24 H 0.09 1.20 8.05 -2.39 -0.02 1.18 16 25 H 0.06 1.24 6.74 -2.38 -0.02 1.22 16 26 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 27 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 28 H 0.14 2.76 8.06 -2.91 -0.02 2.74 16 29 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.07 1.93 8.04 -2.39 -0.02 1.91 16 31 H 0.07 2.96 5.63 -2.39 -0.01 2.95 16 32 H 0.12 3.63 6.57 -2.91 -0.02 3.61 16 33 H 0.37 15.57 8.56 -213.31 -1.83 13.75 16 34 H 0.05 2.96 6.65 -2.39 -0.02 2.95 16 35 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.03 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.27 14.42 8.31 -92.70 -0.77 13.65 16 Total: -1.00 -62.68 309.01 4.01 -58.66 By element: Atomic # 1 Polarization: 24.51 SS G_CDS: -0.77 Total: 23.74 kcal Atomic # 6 Polarization: -38.64 SS G_CDS: 3.94 Total: -34.70 kcal Atomic # 7 Polarization: -91.40 SS G_CDS: -1.18 Total: -92.58 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -62.68 4.01 -58.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755802618.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.295 kcal (2) G-P(sol) polarization free energy of solvation -62.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds