Wall clock time and date at job start Mon Mar 30 2020 06:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38394 * 119.84069 * 2 1 4 4 C 1.37916 * 120.15723 * 179.97438 * 3 2 1 5 5 C 1.39698 * 119.83996 * 0.02562 * 4 3 2 6 6 C 1.47496 * 120.15855 * 180.02562 * 5 4 3 7 7 N 1.29735 * 120.00611 * 174.47909 * 6 5 4 8 8 N 1.40102 * 120.00597 * 179.97438 * 7 6 5 9 9 C 1.46495 * 120.00277 * 180.02562 * 8 7 6 10 10 H 1.08993 * 109.47374 * 330.00160 * 9 8 7 11 11 C 1.52998 * 109.46862 * 90.00570 * 9 8 7 12 12 C 1.50698 * 109.47199 * 210.00197 * 9 8 7 13 13 H 1.08008 * 120.00064 * 0.02562 * 12 9 8 14 14 C 1.37876 * 120.00074 * 180.02562 * 12 9 8 15 15 N 1.31509 * 120.00048 * 359.97438 * 14 12 9 16 16 Si 1.86810 * 119.99886 * 180.02562 * 14 12 9 17 17 H 1.48495 * 109.46864 * 59.99910 * 16 14 12 18 18 H 1.48496 * 109.47011 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.46904 * 300.00052 * 16 14 12 20 20 C 1.39665 * 119.69282 * 0.27923 * 5 4 3 21 21 C 1.50700 * 120.08202 * 179.70744 * 20 5 4 22 22 C 1.37958 * 119.83446 * 359.42411 * 20 5 4 23 23 H 1.08999 * 109.47135 * 90.00288 * 1 2 3 24 24 H 1.09001 * 109.47133 * 209.99908 * 1 2 3 25 25 H 1.08993 * 109.46989 * 330.00127 * 1 2 3 26 26 H 1.07997 * 119.91967 * 359.97231 * 3 2 1 27 27 H 1.07998 * 120.08112 * 180.02562 * 4 3 2 28 28 H 1.08005 * 119.99547 * 354.75213 * 6 5 4 29 29 H 0.97006 * 119.99644 * 0.02562 * 8 7 6 30 30 H 1.08993 * 109.47461 * 59.99644 * 11 9 8 31 31 H 1.09003 * 109.47197 * 180.02562 * 11 9 8 32 32 H 1.09004 * 109.47192 * 299.99279 * 11 9 8 33 33 H 0.97005 * 119.99924 * 180.02562 * 15 14 12 34 34 H 1.08998 * 109.46995 * 83.01298 * 21 20 5 35 35 H 1.09001 * 109.46626 * 203.01755 * 21 20 5 36 36 H 1.08997 * 109.46673 * 323.01222 * 21 20 5 37 37 H 1.08005 * 119.92353 * 180.29734 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.2004 0.0000 4 6 3.5748 1.2081 0.0005 5 6 4.2766 0.0002 0.0005 6 6 5.7515 0.0001 0.0017 7 7 6.4002 -1.1182 0.1098 8 7 7.8012 -1.1183 0.1103 9 6 8.5336 -2.3812 0.2318 10 1 7.9444 -3.0883 0.8156 11 6 8.7892 -2.9586 -1.1618 12 6 9.8501 -2.1340 0.9223 13 1 10.1146 -1.1360 1.2393 14 6 10.7169 -3.1819 1.1493 15 7 10.3947 -4.3972 0.7637 16 14 12.3486 -2.8755 2.0058 17 1 12.0999 -2.3161 3.3587 18 1 13.0910 -4.1557 2.1289 19 1 13.1513 -1.9115 1.2113 20 6 3.5751 -1.2075 -0.0059 21 6 4.3233 -2.5157 -0.0126 22 6 2.1955 -1.2000 -0.0002 23 1 -0.3633 -0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8899 0.5138 26 1 1.6517 2.1335 -0.0005 27 1 4.1109 2.1456 0.0010 28 1 6.2916 0.9316 -0.0830 29 1 8.2863 -0.2821 0.0302 30 1 9.3785 -2.2515 -1.7456 31 1 9.3338 -3.8985 -1.0715 32 1 7.8370 -3.1375 -1.6613 33 1 11.0044 -5.1345 0.9237 34 1 4.6120 -2.7743 1.0061 35 1 3.6826 -3.2985 -0.4187 36 1 5.2163 -2.4202 -0.6303 37 1 1.6516 -2.1331 -0.0003 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771886670.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:36 Heat of formation + Delta-G solvation = 56.571874 kcal Electronic energy + Delta-G solvation = -16945.047440 eV Core-core repulsion = 14301.820712 eV Total energy + Delta-G solvation = -2643.226728 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.32303 -36.48715 -34.42629 -32.89758 -31.92602 -30.94178 -28.09706 -26.81317 -26.02064 -25.19070 -22.07206 -21.50099 -20.25623 -19.65488 -17.02641 -16.20323 -15.64005 -14.93808 -14.64361 -14.49365 -13.97761 -13.69193 -13.16670 -12.98282 -12.69973 -12.54039 -12.36082 -12.19700 -11.78760 -11.48578 -11.38017 -11.13445 -10.99747 -10.85639 -10.74706 -10.52658 -10.25382 -10.22417 -9.22561 -8.98440 -8.64431 -8.49999 -8.38217 -6.75408 -6.15349 -4.23816 1.27312 1.63577 3.04715 3.24493 3.29280 3.30850 3.80330 4.12960 4.35320 4.95335 4.95795 5.13831 5.17030 5.27826 5.36314 5.54723 5.55673 5.75653 5.81025 6.00207 6.01629 6.20001 6.32207 6.35788 6.45743 6.67989 6.75154 6.76665 6.96906 7.02960 7.05099 7.13465 7.28385 7.55657 7.75656 7.84747 8.13434 8.29225 8.83702 9.30993 9.43142 10.90379 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.049300 B = 0.004052 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.818738 B = 6907.773910 C = 7168.596181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.097 4.097 3 C -0.129 4.129 4 C -0.106 4.106 5 C -0.019 4.019 6 C -0.016 4.016 7 N -0.186 5.186 8 N -0.627 5.627 9 C 0.297 3.703 10 H 0.042 0.958 11 C -0.151 4.151 12 C -0.532 4.532 13 H 0.059 0.941 14 C 0.067 3.933 15 N -0.886 5.886 16 Si 0.903 3.097 17 H -0.276 1.276 18 H -0.285 1.285 19 H -0.276 1.276 20 C -0.059 4.059 21 C -0.114 4.114 22 C -0.123 4.123 23 H 0.066 0.934 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.117 0.883 27 H 0.121 0.879 28 H 0.101 0.899 29 H 0.367 0.633 30 H 0.025 0.975 31 H 0.090 0.910 32 H 0.012 0.988 33 H 0.265 0.735 34 H 0.072 0.928 35 H 0.047 0.953 36 H 0.099 0.901 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.720 7.735 -2.170 16.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.098 4.098 3 C -0.147 4.147 4 C -0.127 4.127 5 C -0.021 4.021 6 C -0.223 4.223 7 N 0.001 4.999 8 N -0.363 5.363 9 C 0.195 3.805 10 H 0.060 0.940 11 C -0.210 4.210 12 C -0.571 4.571 13 H 0.077 0.923 14 C -0.136 4.136 15 N -0.524 5.524 16 Si 0.730 3.270 17 H -0.202 1.202 18 H -0.211 1.211 19 H -0.202 1.202 20 C -0.061 4.061 21 C -0.171 4.171 22 C -0.141 4.141 23 H 0.084 0.916 24 H 0.082 0.918 25 H 0.081 0.919 26 H 0.135 0.865 27 H 0.139 0.861 28 H 0.118 0.882 29 H 0.203 0.797 30 H 0.045 0.955 31 H 0.109 0.891 32 H 0.031 0.969 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.066 0.934 36 H 0.117 0.883 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -14.563 6.348 -2.051 16.018 hybrid contribution 1.396 1.393 0.326 1.999 sum -13.167 7.741 -1.725 15.371 Atomic orbital electron populations 1.20744 0.91712 1.02344 1.01896 1.19867 0.95641 0.93247 1.01031 1.20775 0.93890 0.97146 1.02932 1.21074 0.93912 0.96941 1.00792 1.18354 0.90602 0.92679 1.00437 1.23531 0.92683 0.94235 1.11842 1.74259 0.95619 1.25710 1.04300 1.49213 0.97084 1.10292 1.79726 1.18519 0.89498 0.79500 0.92956 0.94025 1.22211 0.98127 1.02897 0.97758 1.21205 1.02027 0.94970 1.38924 0.92276 1.24853 0.98429 0.94855 0.95441 1.69875 1.36923 0.99466 1.46096 0.86487 0.82968 0.77529 0.80012 1.20169 1.21058 1.20173 1.20158 0.93177 0.95425 0.97370 1.21103 1.00490 0.91955 1.03523 1.20840 0.93475 0.97284 1.02534 0.91575 0.91848 0.91916 0.86502 0.86122 0.88175 0.79687 0.95540 0.89140 0.96893 0.92486 0.90983 0.93383 0.88274 0.86409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 10.00 36.01 0.36 -0.61 16 2 C -0.10 -1.16 5.89 -104.52 -0.62 -1.78 16 3 C -0.13 -1.54 9.68 -39.64 -0.38 -1.93 16 4 C -0.11 -1.41 9.79 -39.15 -0.38 -1.79 16 5 C -0.02 -0.29 5.87 -105.05 -0.62 -0.91 16 6 C -0.02 -0.28 10.70 -14.67 -0.16 -0.44 16 7 N -0.19 -3.75 7.43 32.16 0.24 -3.51 16 8 N -0.63 -13.80 6.10 -5.89 -0.04 -13.84 16 9 C 0.30 7.51 3.23 -69.09 -0.22 7.29 16 10 H 0.04 1.16 8.14 -51.93 -0.42 0.74 16 11 C -0.15 -3.68 9.29 37.16 0.35 -3.33 16 12 C -0.53 -14.26 8.74 -34.44 -0.30 -14.56 16 13 H 0.06 1.55 7.79 -52.48 -0.41 1.14 16 14 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 15 N -0.89 -24.57 11.32 55.43 0.63 -23.94 16 16 Si 0.90 20.74 29.54 -169.99 -5.02 15.71 16 17 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 18 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 20 C -0.06 -0.92 5.92 -104.19 -0.62 -1.54 16 21 C -0.11 -1.88 8.61 36.01 0.31 -1.57 16 22 C -0.12 -1.66 9.31 -39.64 -0.37 -2.03 16 23 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 25 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 26 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 27 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 28 H 0.10 1.56 8.02 -52.48 -0.42 1.14 16 29 H 0.37 7.55 8.58 -182.59 -1.57 5.98 16 30 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 32 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 34 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.05 0.68 8.04 -51.93 -0.42 0.26 16 36 H 0.10 1.86 5.68 -51.93 -0.30 1.57 16 37 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 LS Contribution 311.57 15.07 4.70 4.70 Total: -1.00 -27.98 311.57 -9.02 -37.00 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -6.78 Total: 5.36 kcal Atomic # 6 Polarization: -18.74 SS G_CDS: -2.74 Total: -21.49 kcal Atomic # 7 Polarization: -42.12 SS G_CDS: 0.83 Total: -41.29 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -27.98 -9.02 -37.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771886670.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.572 kcal (2) G-P(sol) polarization free energy of solvation -27.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds