Wall clock time and date at job start Mon Mar 30 2020 06:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38402 * 119.84000 * 2 1 4 4 C 1.37907 * 120.15606 * 180.25855 * 3 2 1 5 5 C 1.39702 * 119.83895 * 359.44041 * 4 3 2 6 6 C 1.47494 * 120.15446 * 180.30255 * 5 4 3 7 7 N 1.29753 * 119.99895 * 0.02562 * 6 5 4 8 8 N 1.40094 * 119.99692 * 179.97438 * 7 6 5 9 9 C 1.46505 * 119.99857 * 179.97438 * 8 7 6 10 10 H 1.09001 * 109.47206 * 330.00735 * 9 8 7 11 11 C 1.52997 * 109.46793 * 90.00195 * 9 8 7 12 12 C 1.50698 * 109.47265 * 210.00282 * 9 8 7 13 13 H 1.07999 * 120.00276 * 0.02562 * 12 9 8 14 14 C 1.37879 * 119.99989 * 179.97438 * 12 9 8 15 15 N 1.31513 * 119.99770 * 0.02562 * 14 12 9 16 16 Si 1.86800 * 120.00086 * 179.97438 * 14 12 9 17 17 H 1.48498 * 109.47271 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47203 * 120.00183 * 16 14 12 19 19 H 1.48499 * 109.47136 * 240.00171 * 16 14 12 20 20 C 1.39661 * 119.69286 * 0.27947 * 5 4 3 21 21 C 1.37955 * 119.84053 * 359.97438 * 20 5 4 22 22 C 1.50698 * 119.92236 * 180.02562 * 21 20 5 23 23 H 1.08996 * 109.47319 * 270.29825 * 1 2 3 24 24 H 1.08994 * 109.47113 * 30.30614 * 1 2 3 25 25 H 1.09005 * 109.46806 * 150.30133 * 1 2 3 26 26 H 1.07998 * 119.92011 * 359.97337 * 3 2 1 27 27 H 1.08002 * 120.08227 * 179.72216 * 4 3 2 28 28 H 1.07998 * 120.00448 * 179.97438 * 6 5 4 29 29 H 0.97003 * 120.01021 * 0.02562 * 8 7 6 30 30 H 1.08999 * 109.47326 * 179.97438 * 11 9 8 31 31 H 1.08998 * 109.47626 * 300.00053 * 11 9 8 32 32 H 1.09002 * 109.47489 * 60.00589 * 11 9 8 33 33 H 0.97001 * 119.99710 * 179.97438 * 15 14 12 34 34 H 1.07997 * 120.07833 * 180.02562 * 20 5 4 35 35 H 1.09000 * 109.46678 * 90.00771 * 22 21 20 36 36 H 1.09006 * 109.46987 * 210.00128 * 22 21 20 37 37 H 1.08994 * 109.47024 * 330.00529 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2005 0.0000 4 6 3.5747 1.2081 -0.0054 5 6 4.2765 0.0002 0.0010 6 6 5.7515 0.0003 0.0020 7 7 6.4002 1.1240 -0.0025 8 7 7.8011 1.1240 -0.0009 9 6 8.5336 2.3928 -0.0066 10 1 7.9450 3.1498 -0.5248 11 6 8.7870 2.8417 1.4339 12 6 9.8511 2.2091 -0.7147 13 1 10.1162 1.2439 -1.1204 14 6 10.7177 3.2735 -0.8456 15 7 10.3947 4.4489 -0.3520 16 14 12.3512 3.0456 -1.7227 17 1 12.4751 1.6385 -2.1806 18 1 12.4150 3.9555 -2.8945 19 1 13.4623 3.3616 -0.7896 20 6 3.5750 -1.2074 0.0069 21 6 2.1955 -1.2000 0.0069 22 6 1.4367 -2.5020 0.0138 23 1 -0.3634 0.0053 1.0276 24 1 -0.3633 0.8872 -0.5186 25 1 -0.3633 -0.8927 -0.5092 26 1 1.6518 2.1335 -0.0004 27 1 4.1109 2.1457 -0.0099 28 1 6.2916 -0.9349 0.0074 29 1 8.2863 0.2840 0.0031 30 1 9.3324 3.7854 1.4298 31 1 7.8341 2.9746 1.9461 32 1 9.3756 2.0847 1.9522 33 1 11.0045 5.1976 -0.4438 34 1 4.1113 -2.1449 0.0122 35 1 1.2538 -2.8103 1.0431 36 1 0.4848 -2.3705 -0.5008 37 1 2.0227 -3.2667 -0.4959 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771889902.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:39 Heat of formation + Delta-G solvation = 48.655507 kcal Electronic energy + Delta-G solvation = -16584.335575 eV Core-core repulsion = 13940.765567 eV Total energy + Delta-G solvation = -2643.570007 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.35820 -36.48627 -34.43995 -32.95499 -32.09172 -30.95007 -28.17884 -27.19716 -25.70693 -25.17607 -22.15651 -21.90056 -20.32798 -19.30181 -16.92783 -16.19182 -15.67127 -15.01479 -14.90481 -14.63899 -14.26880 -13.67410 -12.99044 -12.87328 -12.82071 -12.67613 -12.59359 -12.37773 -11.95303 -11.84375 -11.36013 -11.10752 -10.95104 -10.83642 -10.73469 -10.51717 -10.26063 -10.20475 -9.52436 -9.04614 -8.66032 -8.54543 -8.39475 -6.77198 -6.15641 -4.24021 1.25945 1.60825 3.04088 3.22244 3.29859 3.33159 3.78969 4.15448 4.35130 4.85774 4.94218 5.07359 5.12546 5.16978 5.27145 5.43369 5.47405 5.62160 5.70887 5.77274 5.84350 5.89229 6.01043 6.26815 6.29085 6.54119 6.76643 6.78338 6.80827 6.98331 7.03943 7.13839 7.22620 7.56120 7.75808 7.84401 8.12871 8.28237 8.83738 9.30952 9.42969 10.90305 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.049127 B = 0.003622 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.809262 B = 7729.569650 C = 7982.449452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.101 4.101 3 C -0.116 4.116 4 C -0.102 4.102 5 C -0.006 4.006 6 C -0.016 4.016 7 N -0.192 5.192 8 N -0.622 5.622 9 C 0.296 3.704 10 H 0.042 0.958 11 C -0.150 4.150 12 C -0.531 4.531 13 H 0.060 0.940 14 C 0.066 3.934 15 N -0.886 5.886 16 Si 0.903 3.097 17 H -0.273 1.273 18 H -0.282 1.282 19 H -0.282 1.282 20 C -0.112 4.112 21 C -0.090 4.090 22 C -0.114 4.114 23 H 0.066 0.934 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.119 0.881 27 H 0.131 0.869 28 H 0.100 0.900 29 H 0.369 0.631 30 H 0.090 0.910 31 H 0.013 0.987 32 H 0.026 0.974 33 H 0.264 0.736 34 H 0.120 0.880 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.061 -9.931 1.285 18.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.103 4.103 3 C -0.134 4.134 4 C -0.122 4.122 5 C -0.009 4.009 6 C -0.224 4.224 7 N -0.005 5.005 8 N -0.358 5.358 9 C 0.194 3.806 10 H 0.060 0.940 11 C -0.210 4.210 12 C -0.570 4.570 13 H 0.079 0.921 14 C -0.137 4.137 15 N -0.523 5.523 16 Si 0.731 3.269 17 H -0.198 1.198 18 H -0.208 1.208 19 H -0.208 1.208 20 C -0.133 4.133 21 C -0.090 4.090 22 C -0.170 4.170 23 H 0.084 0.916 24 H 0.081 0.919 25 H 0.085 0.915 26 H 0.137 0.863 27 H 0.149 0.851 28 H 0.118 0.882 29 H 0.205 0.795 30 H 0.109 0.891 31 H 0.032 0.968 32 H 0.045 0.955 33 H 0.074 0.926 34 H 0.138 0.862 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.912 -8.545 1.294 18.107 hybrid contribution 1.516 -1.193 -0.396 1.969 sum -14.395 -9.738 0.898 17.403 Atomic orbital electron populations 1.20814 0.91813 1.02437 1.01925 1.19718 0.95580 0.92739 1.02220 1.20929 0.94163 0.97170 1.01177 1.21365 0.93626 0.98334 0.98896 1.18420 0.90645 0.93069 0.98719 1.23478 0.92731 0.93950 1.12269 1.73911 0.96095 1.26861 1.03601 1.49095 0.96722 1.09744 1.80275 1.18558 0.89511 0.79521 0.93032 0.94008 1.22205 0.98167 1.02901 0.97691 1.21275 1.01874 0.96953 1.36894 0.92136 1.24866 0.98489 0.94901 0.95407 1.69901 1.36775 1.00816 1.44851 0.86363 0.82990 0.78285 0.79302 1.19768 1.20793 1.20819 1.20962 0.93167 0.97102 1.02066 1.19527 0.93410 0.94641 1.01426 1.20819 0.99896 0.94277 1.02031 0.91576 0.91916 0.91498 0.86323 0.85108 0.88239 0.79531 0.89119 0.96833 0.95520 0.92588 0.86155 0.91480 0.91422 0.91822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 9.59 36.01 0.35 -0.65 16 2 C -0.10 -1.21 5.89 -104.52 -0.62 -1.83 16 3 C -0.12 -1.54 9.68 -39.64 -0.38 -1.92 16 4 C -0.10 -1.59 9.58 -39.16 -0.38 -1.97 16 5 C -0.01 -0.10 5.87 -105.05 -0.62 -0.72 16 6 C -0.02 -0.29 10.75 -14.66 -0.16 -0.45 16 7 N -0.19 -4.03 10.61 32.16 0.34 -3.69 16 8 N -0.62 -14.05 6.10 -5.88 -0.04 -14.09 16 9 C 0.30 7.63 3.23 -69.08 -0.22 7.41 16 10 H 0.04 1.20 8.14 -51.93 -0.42 0.77 16 11 C -0.15 -3.74 9.29 37.16 0.35 -3.40 16 12 C -0.53 -14.37 8.74 -34.44 -0.30 -14.67 16 13 H 0.06 1.61 7.79 -52.49 -0.41 1.20 16 14 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 15 N -0.89 -24.78 11.32 55.43 0.63 -24.15 16 16 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 17 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 C -0.11 -1.49 9.44 -39.15 -0.37 -1.86 16 21 C -0.09 -1.07 5.87 -104.69 -0.61 -1.69 16 22 C -0.11 -0.99 9.60 36.00 0.35 -0.64 16 23 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 25 H 0.07 0.50 5.93 -51.93 -0.31 0.19 16 26 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 27 H 0.13 2.19 7.56 -52.49 -0.40 1.79 16 28 H 0.10 1.58 8.02 -52.49 -0.42 1.15 16 29 H 0.37 7.71 8.58 -182.60 -1.57 6.15 16 30 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 31 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 34 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.50 5.93 -51.93 -0.31 0.20 16 37 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 LS Contribution 312.89 15.07 4.72 4.72 Total: -1.00 -28.78 312.89 -8.74 -37.52 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -6.66 Total: 4.55 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: -2.72 Total: -20.68 kcal Atomic # 7 Polarization: -42.86 SS G_CDS: 0.93 Total: -41.93 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.78 -8.74 -37.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771889902.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.178 kcal (2) G-P(sol) polarization free energy of solvation -28.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds