Wall clock time and date at job start Mon Mar 30 2020 06:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38402 * 119.84000 * 2 1 4 4 C 1.37907 * 120.15606 * 180.25855 * 3 2 1 5 5 C 1.39702 * 119.83895 * 359.44041 * 4 3 2 6 6 C 1.47494 * 120.15446 * 180.30255 * 5 4 3 7 7 N 1.29753 * 119.99895 * 0.02562 * 6 5 4 8 8 N 1.40094 * 119.99692 * 179.97438 * 7 6 5 9 9 C 1.46505 * 119.99857 * 179.97438 * 8 7 6 10 10 H 1.09001 * 109.47206 * 330.00735 * 9 8 7 11 11 C 1.52997 * 109.46793 * 90.00195 * 9 8 7 12 12 C 1.50698 * 109.47265 * 210.00282 * 9 8 7 13 13 H 1.07999 * 120.00276 * 0.02562 * 12 9 8 14 14 C 1.37879 * 119.99989 * 179.97438 * 12 9 8 15 15 N 1.31513 * 119.99770 * 0.02562 * 14 12 9 16 16 Si 1.86800 * 120.00086 * 179.97438 * 14 12 9 17 17 H 1.48498 * 109.47271 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47203 * 120.00183 * 16 14 12 19 19 H 1.48499 * 109.47136 * 240.00171 * 16 14 12 20 20 C 1.39661 * 119.69286 * 0.27947 * 5 4 3 21 21 C 1.37955 * 119.84053 * 359.97438 * 20 5 4 22 22 C 1.50698 * 119.92236 * 180.02562 * 21 20 5 23 23 H 1.08996 * 109.47319 * 270.29825 * 1 2 3 24 24 H 1.08994 * 109.47113 * 30.30614 * 1 2 3 25 25 H 1.09005 * 109.46806 * 150.30133 * 1 2 3 26 26 H 1.07998 * 119.92011 * 359.97337 * 3 2 1 27 27 H 1.08002 * 120.08227 * 179.72216 * 4 3 2 28 28 H 1.07998 * 120.00448 * 179.97438 * 6 5 4 29 29 H 0.97003 * 120.01021 * 0.02562 * 8 7 6 30 30 H 1.08999 * 109.47326 * 179.97438 * 11 9 8 31 31 H 1.08998 * 109.47626 * 300.00053 * 11 9 8 32 32 H 1.09002 * 109.47489 * 60.00589 * 11 9 8 33 33 H 0.97001 * 119.99710 * 179.97438 * 15 14 12 34 34 H 1.07997 * 120.07833 * 180.02562 * 20 5 4 35 35 H 1.09000 * 109.46678 * 90.00771 * 22 21 20 36 36 H 1.09006 * 109.46987 * 210.00128 * 22 21 20 37 37 H 1.08994 * 109.47024 * 330.00529 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2005 0.0000 4 6 3.5747 1.2081 -0.0054 5 6 4.2765 0.0002 0.0010 6 6 5.7515 0.0003 0.0020 7 7 6.4002 1.1240 -0.0025 8 7 7.8011 1.1240 -0.0009 9 6 8.5336 2.3928 -0.0066 10 1 7.9450 3.1498 -0.5248 11 6 8.7870 2.8417 1.4339 12 6 9.8511 2.2091 -0.7147 13 1 10.1162 1.2439 -1.1204 14 6 10.7177 3.2735 -0.8456 15 7 10.3947 4.4489 -0.3520 16 14 12.3512 3.0456 -1.7227 17 1 12.4751 1.6385 -2.1806 18 1 12.4150 3.9555 -2.8945 19 1 13.4623 3.3616 -0.7896 20 6 3.5750 -1.2074 0.0069 21 6 2.1955 -1.2000 0.0069 22 6 1.4367 -2.5020 0.0138 23 1 -0.3634 0.0053 1.0276 24 1 -0.3633 0.8872 -0.5186 25 1 -0.3633 -0.8927 -0.5092 26 1 1.6518 2.1335 -0.0004 27 1 4.1109 2.1457 -0.0099 28 1 6.2916 -0.9349 0.0074 29 1 8.2863 0.2840 0.0031 30 1 9.3324 3.7854 1.4298 31 1 7.8341 2.9746 1.9461 32 1 9.3756 2.0847 1.9522 33 1 11.0045 5.1976 -0.4438 34 1 4.1113 -2.1449 0.0122 35 1 1.2538 -2.8103 1.0431 36 1 0.4848 -2.3705 -0.5008 37 1 2.0227 -3.2667 -0.4959 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771889902.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:39 Heat of formation + Delta-G solvation = 33.056214 kcal Electronic energy + Delta-G solvation = -16585.012011 eV Core-core repulsion = 13940.765567 eV Total energy + Delta-G solvation = -2644.246444 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.40271 -38.10460 -36.11680 -34.35789 -33.12086 -32.61907 -29.57996 -28.26869 -27.36460 -26.72725 -23.48484 -22.93706 -22.19557 -20.57016 -18.72581 -17.62799 -17.17956 -16.67139 -16.01971 -15.83234 -15.31996 -15.08924 -14.52722 -14.39121 -14.01111 -13.88406 -13.53547 -13.47310 -13.29758 -12.99238 -12.91746 -12.72810 -12.59231 -12.34437 -12.16392 -12.03981 -11.89314 -11.70413 -11.16734 -10.90298 -10.61539 -9.78755 -9.52376 -8.37311 -8.18887 -6.37694 0.09663 0.55771 1.41162 1.41735 1.54056 1.73711 2.15571 2.45402 3.01793 3.08746 3.87949 3.97213 4.04282 4.21255 4.33880 4.48802 4.63818 4.70326 4.79827 4.82872 4.91064 4.95612 4.97287 5.06482 5.08664 5.09361 5.21425 5.32565 5.45762 5.49483 5.64285 5.65528 5.79092 5.81004 5.89143 6.15886 6.19315 6.38514 6.81655 7.34008 7.74929 8.85235 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.049127 B = 0.003622 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.809262 B = 7729.569650 C = 7982.449452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.093 4.093 3 C -0.126 4.126 4 C -0.119 4.119 5 C -0.044 4.044 6 C 0.023 3.977 7 N -0.244 5.244 8 N -0.641 5.641 9 C 0.307 3.693 10 H 0.000 1.000 11 C -0.136 4.136 12 C -0.549 4.549 13 H 0.061 0.939 14 C 0.018 3.982 15 N -0.915 5.915 16 Si 0.973 3.027 17 H -0.267 1.267 18 H -0.279 1.279 19 H -0.275 1.275 20 C -0.105 4.105 21 C -0.094 4.094 22 C -0.112 4.112 23 H 0.079 0.921 24 H 0.070 0.930 25 H 0.085 0.915 26 H 0.135 0.865 27 H 0.106 0.894 28 H 0.121 0.879 29 H 0.373 0.627 30 H 0.070 0.930 31 H 0.016 0.984 32 H 0.031 0.969 33 H 0.267 0.733 34 H 0.142 0.858 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.858 -12.310 1.024 21.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.095 4.095 3 C -0.144 4.144 4 C -0.140 4.140 5 C -0.046 4.046 6 C -0.186 4.186 7 N -0.054 5.054 8 N -0.378 5.378 9 C 0.203 3.797 10 H 0.018 0.982 11 C -0.195 4.195 12 C -0.588 4.588 13 H 0.079 0.921 14 C -0.182 4.182 15 N -0.553 5.553 16 Si 0.797 3.203 17 H -0.191 1.191 18 H -0.205 1.205 19 H -0.201 1.201 20 C -0.126 4.126 21 C -0.094 4.094 22 C -0.169 4.169 23 H 0.098 0.902 24 H 0.089 0.911 25 H 0.104 0.896 26 H 0.153 0.847 27 H 0.124 0.876 28 H 0.138 0.862 29 H 0.210 0.790 30 H 0.088 0.912 31 H 0.035 0.965 32 H 0.050 0.950 33 H 0.077 0.923 34 H 0.160 0.840 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -17.727 -10.933 1.038 20.853 hybrid contribution 1.734 -0.587 -0.305 1.856 sum -15.992 -11.520 0.733 19.723 Atomic orbital electron populations 1.20911 0.89065 1.03841 1.03168 1.20203 0.97613 0.92129 0.99516 1.21159 0.93220 0.98849 1.01155 1.21340 0.94914 0.97558 1.00174 1.18522 0.89603 0.94360 1.02117 1.24087 0.93896 0.93999 1.06642 1.73972 0.95160 1.28529 1.07691 1.48557 0.97489 1.08476 1.83260 1.18130 0.88890 0.80123 0.92579 0.98242 1.22019 0.97980 1.01854 0.97668 1.21553 1.02631 0.97210 1.37394 0.92055 1.25740 1.02006 0.94491 0.95986 1.70026 1.38060 1.01555 1.45663 0.85290 0.78515 0.78387 0.78089 1.19093 1.20471 1.20058 1.21248 0.94069 0.96775 1.00489 1.19995 0.93108 0.96337 0.99984 1.20897 1.00286 0.92421 1.03248 0.90220 0.91087 0.89649 0.84716 0.87555 0.86214 0.78958 0.91152 0.96495 0.95018 0.92336 0.84029 0.90192 0.89767 0.90821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.53 9.59 71.24 0.68 -0.85 16 2 C -0.09 -1.97 5.89 -19.80 -0.12 -2.08 16 3 C -0.13 -3.19 9.68 22.23 0.22 -2.98 16 4 C -0.12 -3.80 9.58 22.55 0.22 -3.59 16 5 C -0.04 -1.37 5.87 -20.14 -0.12 -1.48 16 6 C 0.02 0.83 10.75 87.44 0.94 1.77 16 7 N -0.24 -10.68 10.61 -52.16 -0.55 -11.23 16 8 N -0.64 -30.15 6.10 -172.52 -1.05 -31.21 16 9 C 0.31 16.61 3.23 44.24 0.14 16.75 16 10 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 11 C -0.14 -7.06 9.29 71.98 0.67 -6.39 16 12 C -0.55 -30.58 8.74 25.60 0.22 -30.36 16 13 H 0.06 3.32 7.79 -2.91 -0.02 3.29 16 14 C 0.02 0.99 5.30 84.66 0.45 1.44 16 15 N -0.91 -52.61 11.32 21.45 0.24 -52.37 16 16 Si 0.97 43.10 29.54 68.60 2.03 45.12 16 17 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 18 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 19 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 20 C -0.11 -2.56 9.44 22.55 0.21 -2.35 16 21 C -0.09 -1.94 5.87 -19.91 -0.12 -2.06 16 22 C -0.11 -1.45 9.60 71.24 0.68 -0.76 16 23 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.07 0.88 8.08 -2.39 -0.02 0.86 16 25 H 0.08 0.87 5.93 -2.38 -0.01 0.86 16 26 H 0.13 2.86 8.06 -2.91 -0.02 2.84 16 27 H 0.11 3.83 7.56 -2.91 -0.02 3.81 16 28 H 0.12 3.66 8.02 -2.91 -0.02 3.64 16 29 H 0.37 16.10 8.58 -213.32 -1.83 14.27 16 30 H 0.07 3.92 6.07 -2.39 -0.01 3.90 16 31 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 34 H 0.14 2.76 8.06 -2.91 -0.02 2.74 16 35 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.08 0.83 5.93 -2.38 -0.01 0.82 16 37 H 0.07 0.84 8.08 -2.39 -0.02 0.82 16 Total: -1.00 -64.33 312.89 3.97 -60.35 By element: Atomic # 1 Polarization: 23.03 SS G_CDS: -0.77 Total: 22.26 kcal Atomic # 6 Polarization: -37.01 SS G_CDS: 4.08 Total: -32.93 kcal Atomic # 7 Polarization: -93.44 SS G_CDS: -1.36 Total: -94.81 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Total: -64.33 3.97 -60.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771889902.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.411 kcal (2) G-P(sol) polarization free energy of solvation -64.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds