Wall clock time and date at job start Mon Mar 30 2020 05:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00005 * 2 1 4 4 H 1.48498 * 109.47140 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47443 * 120.00141 * 3 2 1 6 6 H 1.48502 * 109.46988 * 239.99606 * 3 2 1 7 7 C 1.37880 * 120.00023 * 180.27342 * 2 1 3 8 8 H 1.07991 * 120.00398 * 179.72702 * 7 2 1 9 9 C 1.50700 * 119.99518 * 359.72492 * 7 2 1 10 10 C 1.50701 * 109.46868 * 180.02562 * 9 7 2 11 11 C 1.38346 * 120.44791 * 264.50976 * 10 9 7 12 12 C 1.38848 * 118.50387 * 179.97438 * 11 10 9 13 13 C 1.38067 * 119.32675 * 359.97438 * 12 11 10 14 14 N 1.31936 * 120.85623 * 0.02873 * 13 12 11 15 15 C 1.32427 * 121.62511 * 359.68023 * 14 13 12 16 16 N 1.39005 * 119.70918 * 180.29133 * 15 14 13 17 17 C 1.46846 * 110.99815 * 62.11646 * 16 15 14 18 18 C 1.53048 * 109.52236 * 174.15991 * 17 16 15 19 19 C 1.53120 * 109.27372 * 59.18150 * 18 17 16 20 20 C 1.53121 * 109.15981 * 302.34160 * 19 18 17 21 21 C 1.46847 * 110.99858 * 297.90907 * 16 15 14 22 22 H 0.96998 * 120.00396 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47503 * 299.99841 * 9 7 2 24 24 H 1.08997 * 109.47543 * 60.00306 * 9 7 2 25 25 H 1.07995 * 120.74785 * 359.95721 * 11 10 9 26 26 H 1.07994 * 120.33207 * 180.02562 * 12 11 10 27 27 H 1.08000 * 119.56920 * 180.02562 * 13 12 11 28 28 H 1.08997 * 109.46547 * 294.17403 * 17 16 15 29 29 H 1.08996 * 109.46534 * 54.14853 * 17 16 15 30 30 H 1.08992 * 109.50375 * 299.24272 * 18 17 16 31 31 H 1.08996 * 109.50057 * 179.11827 * 18 17 16 32 32 H 1.09002 * 109.51894 * 182.43898 * 19 18 17 33 33 H 1.08996 * 109.57831 * 62.28468 * 19 18 17 34 34 H 1.08994 * 109.50279 * 297.71705 * 20 19 18 35 35 H 1.09003 * 109.53107 * 177.61496 * 20 19 18 36 36 H 1.09002 * 109.46290 * 305.85018 * 21 16 15 37 37 H 1.08990 * 109.46295 * 65.83317 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7464 -0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1029 1.6963 -1.2125 7 6 2.0045 -1.1941 -0.0057 8 1 3.0844 -1.1941 -0.0102 9 6 1.2509 -2.4991 -0.0057 10 6 2.2302 -3.6446 -0.0118 11 6 2.5945 -4.2491 -1.2017 12 6 3.5003 -5.3006 -1.1605 13 6 4.0075 -5.7090 0.0569 14 7 3.6419 -5.1138 1.1763 15 6 2.7851 -4.1041 1.1780 16 7 2.4323 -3.5022 2.3803 17 6 3.6027 -2.8985 3.0300 18 6 3.1553 -2.1230 4.2713 19 6 2.4486 -3.0785 5.2367 20 6 1.2625 -3.7302 4.5204 21 6 1.7647 -4.4591 3.2719 22 1 -0.4850 -0.8400 -0.0004 23 1 0.6279 -2.5590 0.8868 24 1 0.6206 -2.5548 -0.8931 25 1 2.1835 -3.9108 -2.1413 26 1 3.8055 -5.7935 -2.0717 27 1 4.7125 -6.5263 0.0935 28 1 4.3000 -3.6830 3.3237 29 1 4.0937 -2.2181 2.3342 30 1 2.4686 -1.3295 3.9768 31 1 4.0260 -1.6881 4.7620 32 1 2.0901 -2.5220 6.1027 33 1 3.1459 -3.8501 5.5628 34 1 0.5460 -2.9619 4.2298 35 1 0.7802 -4.4435 5.1888 36 1 0.9207 -4.9122 2.7518 37 1 2.4707 -5.2362 3.5645 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535779583.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:52 Heat of formation + Delta-G solvation = 25.084863 kcal Electronic energy + Delta-G solvation = -18314.209666 eV Core-core repulsion = 15669.617558 eV Total energy + Delta-G solvation = -2644.592107 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.15534 -37.87406 -34.03809 -33.34530 -31.82483 -30.48055 -29.69409 -26.73796 -24.33683 -23.37619 -22.69268 -21.77559 -20.89658 -19.29834 -17.04233 -16.71150 -15.99038 -15.02085 -14.70945 -14.30300 -13.87528 -13.64298 -13.47892 -13.30979 -12.96013 -12.64584 -12.40274 -12.30423 -11.86060 -11.63194 -11.19867 -10.84025 -10.61883 -10.47106 -10.35534 -10.16300 -10.11365 -9.93451 -9.31506 -9.08591 -8.78544 -8.27666 -7.92686 -7.88162 -6.28901 -3.96928 1.63775 1.91374 3.46385 3.48020 3.66469 4.15589 4.29946 4.60464 4.96742 5.13463 5.18580 5.23042 5.36839 5.46776 5.59266 5.61380 5.75671 5.77106 5.80076 5.89477 5.93760 6.05681 6.16348 6.20970 6.25992 6.42560 6.48430 6.51816 6.56045 6.76400 6.77492 7.08986 7.34623 7.47757 7.58861 7.95994 8.21482 8.45644 8.52429 8.92817 9.71134 11.10680 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.015589 B = 0.010439 C = 0.007316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.736374 B = 2681.483762 C = 3826.118945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.019 3.981 3 Si 1.065 2.935 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.290 1.290 7 C -0.572 4.572 8 H 0.043 0.957 9 C 0.051 3.949 10 C -0.046 4.046 11 C -0.089 4.089 12 C -0.176 4.176 13 C 0.073 3.927 14 N -0.516 5.516 15 C 0.281 3.719 16 N -0.462 5.462 17 C 0.072 3.928 18 C -0.117 4.117 19 C -0.117 4.117 20 C -0.116 4.116 21 C 0.064 3.936 22 H 0.268 0.732 23 H 0.037 0.963 24 H 0.011 0.989 25 H 0.130 0.870 26 H 0.125 0.875 27 H 0.142 0.858 28 H 0.035 0.965 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.391 -8.702 5.026 11.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.185 4.185 3 Si 0.894 3.106 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.217 1.217 7 C -0.610 4.610 8 H 0.061 0.939 9 C 0.013 3.987 10 C -0.050 4.050 11 C -0.115 4.115 12 C -0.196 4.196 13 C -0.085 4.085 14 N -0.228 5.228 15 C 0.053 3.947 16 N -0.185 5.185 17 C -0.055 4.055 18 C -0.155 4.155 19 C -0.155 4.155 20 C -0.154 4.154 21 C -0.063 4.063 22 H 0.079 0.921 23 H 0.055 0.945 24 H 0.029 0.971 25 H 0.148 0.852 26 H 0.143 0.857 27 H 0.160 0.840 28 H 0.053 0.947 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.093 0.907 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 5.210 -6.958 5.742 10.417 hybrid contribution 0.580 -2.096 -0.768 2.306 sum 5.789 -9.054 4.974 11.842 Atomic orbital electron populations 1.70766 1.06785 1.30504 1.46976 1.25702 0.96504 1.02183 0.94078 0.83594 0.74930 0.75623 0.76459 1.20827 1.21451 1.21670 1.21671 0.93693 0.90578 1.55058 0.93877 1.18292 0.92806 0.90422 0.97134 1.21204 0.96964 0.95842 0.90951 1.21507 0.96670 0.94783 0.98560 1.21995 0.99579 0.99025 0.99019 1.22184 0.99360 0.99177 0.87807 1.67601 1.13657 1.09557 1.32003 1.19618 0.92826 0.90660 0.91642 1.59901 1.26220 1.30302 1.02044 1.21943 0.90454 0.97350 0.95717 1.21593 1.00488 0.98672 0.94756 1.21551 0.97407 0.98614 0.97932 1.21584 0.98206 1.00041 0.95556 1.22018 0.97934 0.93130 0.93227 0.92120 0.94530 0.97072 0.85183 0.85749 0.84030 0.94696 0.90708 0.90269 0.91894 0.92113 0.92701 0.90672 0.91954 0.91539 0.94355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.50 13.65 55.43 0.76 -26.74 16 2 C 0.02 0.53 5.46 -17.82 -0.10 0.44 16 3 Si 1.07 25.35 29.90 -169.99 -5.08 20.26 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.57 -15.95 9.09 -34.44 -0.31 -16.26 16 8 H 0.04 1.23 7.74 -52.49 -0.41 0.82 16 9 C 0.05 1.30 4.12 -29.03 -0.12 1.18 16 10 C -0.05 -1.03 5.11 -104.26 -0.53 -1.56 16 11 C -0.09 -1.71 9.83 -39.32 -0.39 -2.09 16 12 C -0.18 -2.84 10.10 -39.42 -0.40 -3.24 16 13 C 0.07 1.21 11.17 -17.57 -0.20 1.01 16 14 N -0.52 -9.96 9.74 -12.44 -0.12 -10.09 16 15 C 0.28 5.90 5.28 -155.01 -0.82 5.08 16 16 N -0.46 -9.27 3.70 -173.23 -0.64 -9.91 16 17 C 0.07 1.34 5.26 -3.83 -0.02 1.32 16 18 C -0.12 -1.87 6.09 -26.64 -0.16 -2.04 16 19 C -0.12 -1.62 6.00 -26.61 -0.16 -1.78 16 20 C -0.12 -1.72 6.09 -26.65 -0.16 -1.88 16 21 C 0.06 1.10 5.26 -3.83 -0.02 1.08 16 22 H 0.27 8.05 7.22 -40.82 -0.29 7.76 16 23 H 0.04 0.99 7.54 -51.93 -0.39 0.60 16 24 H 0.01 0.29 7.92 -51.93 -0.41 -0.12 16 25 H 0.13 2.33 8.06 -52.49 -0.42 1.90 16 26 H 0.12 1.56 8.06 -52.49 -0.42 1.13 16 27 H 0.14 1.85 8.06 -52.49 -0.42 1.43 16 28 H 0.03 0.63 8.03 -51.93 -0.42 0.21 16 29 H 0.07 1.54 8.10 -51.93 -0.42 1.11 16 30 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 1.16 8.10 -51.93 -0.42 0.74 16 37 H 0.04 0.65 8.03 -51.93 -0.42 0.23 16 LS Contribution 302.90 15.07 4.56 4.56 Total: -1.00 -30.64 302.90 -9.69 -40.33 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -5.78 Total: 0.32 kcal Atomic # 6 Polarization: -15.35 SS G_CDS: -3.39 Total: -18.74 kcal Atomic # 7 Polarization: -46.73 SS G_CDS: 0.00 Total: -46.74 kcal Atomic # 14 Polarization: 25.35 SS G_CDS: -5.08 Total: 20.26 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.64 -9.69 -40.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535779583.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.412 kcal (2) G-P(sol) polarization free energy of solvation -30.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds