Wall clock time and date at job start Mon Mar 30 2020 05:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00005 * 2 1 4 4 H 1.48498 * 109.47140 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47443 * 120.00141 * 3 2 1 6 6 H 1.48502 * 109.46988 * 239.99606 * 3 2 1 7 7 C 1.37880 * 120.00023 * 180.27342 * 2 1 3 8 8 H 1.07991 * 120.00398 * 179.72702 * 7 2 1 9 9 C 1.50700 * 119.99518 * 359.72492 * 7 2 1 10 10 C 1.50701 * 109.46868 * 180.02562 * 9 7 2 11 11 C 1.38346 * 120.44791 * 264.50976 * 10 9 7 12 12 C 1.38848 * 118.50387 * 179.97438 * 11 10 9 13 13 C 1.38067 * 119.32675 * 359.97438 * 12 11 10 14 14 N 1.31936 * 120.85623 * 0.02873 * 13 12 11 15 15 C 1.32427 * 121.62511 * 359.68023 * 14 13 12 16 16 N 1.39005 * 119.70918 * 180.29133 * 15 14 13 17 17 C 1.46846 * 110.99815 * 62.11646 * 16 15 14 18 18 C 1.53048 * 109.52236 * 174.15991 * 17 16 15 19 19 C 1.53120 * 109.27372 * 59.18150 * 18 17 16 20 20 C 1.53121 * 109.15981 * 302.34160 * 19 18 17 21 21 C 1.46847 * 110.99858 * 297.90907 * 16 15 14 22 22 H 0.96998 * 120.00396 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47503 * 299.99841 * 9 7 2 24 24 H 1.08997 * 109.47543 * 60.00306 * 9 7 2 25 25 H 1.07995 * 120.74785 * 359.95721 * 11 10 9 26 26 H 1.07994 * 120.33207 * 180.02562 * 12 11 10 27 27 H 1.08000 * 119.56920 * 180.02562 * 13 12 11 28 28 H 1.08997 * 109.46547 * 294.17403 * 17 16 15 29 29 H 1.08996 * 109.46534 * 54.14853 * 17 16 15 30 30 H 1.08992 * 109.50375 * 299.24272 * 18 17 16 31 31 H 1.08996 * 109.50057 * 179.11827 * 18 17 16 32 32 H 1.09002 * 109.51894 * 182.43898 * 19 18 17 33 33 H 1.08996 * 109.57831 * 62.28468 * 19 18 17 34 34 H 1.08994 * 109.50279 * 297.71705 * 20 19 18 35 35 H 1.09003 * 109.53107 * 177.61496 * 20 19 18 36 36 H 1.09002 * 109.46290 * 305.85018 * 21 16 15 37 37 H 1.08990 * 109.46295 * 65.83317 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7464 -0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1029 1.6963 -1.2125 7 6 2.0045 -1.1941 -0.0057 8 1 3.0844 -1.1941 -0.0102 9 6 1.2509 -2.4991 -0.0057 10 6 2.2302 -3.6446 -0.0118 11 6 2.5945 -4.2491 -1.2017 12 6 3.5003 -5.3006 -1.1605 13 6 4.0075 -5.7090 0.0569 14 7 3.6419 -5.1138 1.1763 15 6 2.7851 -4.1041 1.1780 16 7 2.4323 -3.5022 2.3803 17 6 3.6027 -2.8985 3.0300 18 6 3.1553 -2.1230 4.2713 19 6 2.4486 -3.0785 5.2367 20 6 1.2625 -3.7302 4.5204 21 6 1.7647 -4.4591 3.2719 22 1 -0.4850 -0.8400 -0.0004 23 1 0.6279 -2.5590 0.8868 24 1 0.6206 -2.5548 -0.8931 25 1 2.1835 -3.9108 -2.1413 26 1 3.8055 -5.7935 -2.0717 27 1 4.7125 -6.5263 0.0935 28 1 4.3000 -3.6830 3.3237 29 1 4.0937 -2.2181 2.3342 30 1 2.4686 -1.3295 3.9768 31 1 4.0260 -1.6881 4.7620 32 1 2.0901 -2.5220 6.1027 33 1 3.1459 -3.8501 5.5628 34 1 0.5460 -2.9619 4.2298 35 1 0.7802 -4.4435 5.1888 36 1 0.9207 -4.9122 2.7518 37 1 2.4707 -5.2362 3.5645 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535779583.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:51 Heat of formation + Delta-G solvation = 7.718114 kcal Electronic energy + Delta-G solvation = -18314.962744 eV Core-core repulsion = 15669.617558 eV Total energy + Delta-G solvation = -2645.345186 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.143 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.62410 -39.24313 -36.01176 -34.69362 -33.63163 -31.82004 -31.20282 -28.58539 -25.71977 -25.35302 -24.03245 -23.30134 -22.49123 -20.60848 -18.91869 -18.39766 -17.48037 -16.45812 -16.16657 -15.75991 -15.55343 -15.33995 -14.91479 -14.64610 -14.55828 -14.10421 -13.88243 -13.79645 -13.57987 -13.20303 -13.13771 -12.49859 -12.18499 -12.12931 -11.91131 -11.67619 -11.42883 -11.39205 -11.13224 -10.62201 -10.47953 -10.43308 -9.54943 -9.37490 -8.58075 -6.27480 0.19166 0.40889 1.51320 1.59384 1.78516 2.57533 2.74105 2.86949 3.23322 3.61569 3.86466 3.93104 3.97804 4.06189 4.21313 4.27942 4.28762 4.40054 4.40704 4.55520 4.61607 4.78537 4.82956 4.85303 4.95367 5.00827 5.08185 5.19120 5.19878 5.25219 5.28251 5.46865 5.63794 5.69199 5.99481 6.08947 6.22679 6.47930 6.64804 7.01763 7.48770 8.80265 Molecular weight = 246.14amu Principal moments of inertia in cm(-1) A = 0.015589 B = 0.010439 C = 0.007316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.736374 B = 2681.483762 C = 3826.118945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.031 4.031 3 Si 1.109 2.891 4 H -0.282 1.282 5 H -0.273 1.273 6 H -0.272 1.272 7 C -0.573 4.573 8 H 0.032 0.968 9 C 0.066 3.934 10 C -0.090 4.090 11 C -0.096 4.096 12 C -0.160 4.160 13 C 0.080 3.920 14 N -0.526 5.526 15 C 0.270 3.730 16 N -0.488 5.488 17 C 0.077 3.923 18 C -0.115 4.115 19 C -0.110 4.110 20 C -0.113 4.113 21 C 0.067 3.933 22 H 0.255 0.745 23 H 0.009 0.991 24 H -0.008 1.008 25 H 0.135 0.865 26 H 0.172 0.828 27 H 0.187 0.813 28 H 0.043 0.957 29 H 0.043 0.957 30 H 0.049 0.951 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.050 0.950 35 H 0.092 0.908 36 H 0.053 0.947 37 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.481 -10.034 5.526 13.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.228 4.228 3 Si 0.931 3.069 4 H -0.207 1.207 5 H -0.198 1.198 6 H -0.197 1.197 7 C -0.611 4.611 8 H 0.051 0.949 9 C 0.028 3.972 10 C -0.093 4.093 11 C -0.122 4.122 12 C -0.179 4.179 13 C -0.078 4.078 14 N -0.239 5.239 15 C 0.043 3.957 16 N -0.212 5.212 17 C -0.050 4.050 18 C -0.152 4.152 19 C -0.147 4.147 20 C -0.150 4.150 21 C -0.060 4.060 22 H 0.064 0.936 23 H 0.027 0.973 24 H 0.010 0.990 25 H 0.153 0.847 26 H 0.189 0.811 27 H 0.204 0.796 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.091 0.909 34 H 0.069 0.931 35 H 0.111 0.889 36 H 0.071 0.929 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 7.300 -8.309 6.248 12.703 hybrid contribution -0.023 -1.830 -0.994 2.082 sum 7.277 -10.139 5.255 13.541 Atomic orbital electron populations 1.70894 1.07722 1.29696 1.49189 1.27130 0.96556 1.05924 0.93209 0.83036 0.74256 0.71822 0.77758 1.20728 1.19825 1.19750 1.21882 0.93206 0.91983 1.54043 0.94939 1.17934 0.92963 0.91572 0.94719 1.21029 0.98501 0.96598 0.93204 1.21712 0.97308 0.95582 0.97633 1.22403 0.97400 0.97266 1.00871 1.23039 0.98617 0.99023 0.87152 1.67695 1.13507 1.09286 1.33401 1.19640 0.93274 0.91299 0.91533 1.59877 1.27067 1.31586 1.02661 1.21889 0.90192 0.97042 0.95830 1.21592 1.01018 0.98172 0.94454 1.21528 0.96925 0.98605 0.97668 1.21594 0.98371 0.99947 0.95136 1.22042 0.97311 0.93053 0.93546 0.93581 0.97286 0.99009 0.84702 0.81094 0.79580 0.93913 0.93834 0.93258 0.89481 0.89908 0.90925 0.93069 0.88932 0.92879 0.93737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.53 13.65 21.45 0.29 -58.24 16 2 C -0.03 -1.81 5.46 84.66 0.46 -1.35 16 3 Si 1.11 51.58 29.90 68.60 2.05 53.63 16 4 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 5 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 7 C -0.57 -33.26 9.09 25.60 0.23 -33.03 16 8 H 0.03 1.91 7.74 -2.92 -0.02 1.89 16 9 C 0.07 3.55 4.12 29.10 0.12 3.67 16 10 C -0.09 -4.11 5.11 -19.63 -0.10 -4.21 16 11 C -0.10 -3.63 9.83 22.44 0.22 -3.41 16 12 C -0.16 -4.63 10.10 22.38 0.23 -4.40 16 13 C 0.08 2.38 11.17 84.64 0.95 3.32 16 14 N -0.53 -19.54 9.74 -193.26 -1.88 -21.42 16 15 C 0.27 11.48 5.28 133.05 0.70 12.18 16 16 N -0.49 -20.15 3.70 -701.99 -2.59 -22.75 16 17 C 0.08 2.90 5.26 86.33 0.45 3.35 16 18 C -0.11 -3.61 6.09 30.65 0.19 -3.43 16 19 C -0.11 -2.82 6.00 30.68 0.18 -2.63 16 20 C -0.11 -3.26 6.09 30.65 0.19 -3.07 16 21 C 0.07 2.32 5.26 86.33 0.45 2.78 16 22 H 0.25 16.17 7.22 -92.71 -0.67 15.50 16 23 H 0.01 0.52 7.54 -2.38 -0.02 0.51 16 24 H -0.01 -0.47 7.92 -2.39 -0.02 -0.48 16 25 H 0.14 4.81 8.06 -2.91 -0.02 4.79 16 26 H 0.17 3.35 8.06 -2.91 -0.02 3.33 16 27 H 0.19 3.84 8.06 -2.91 -0.02 3.81 16 28 H 0.04 1.51 8.03 -2.39 -0.02 1.49 16 29 H 0.04 1.85 8.10 -2.39 -0.02 1.83 16 30 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.05 1.92 8.10 -2.39 -0.02 1.90 16 37 H 0.04 1.47 8.03 -2.39 -0.02 1.45 16 Total: -1.00 -69.59 302.90 3.27 -66.32 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: 1.13 Total: 12.67 kcal Atomic # 6 Polarization: -34.49 SS G_CDS: 4.28 Total: -30.22 kcal Atomic # 7 Polarization: -98.23 SS G_CDS: -4.18 Total: -102.41 kcal Atomic # 14 Polarization: 51.58 SS G_CDS: 2.05 Total: 53.63 kcal Total: -69.59 3.27 -66.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535779583.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.037 kcal (2) G-P(sol) polarization free energy of solvation -69.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds