Wall clock time and date at job start Mon Mar 30 2020 06:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86800 * 120.00223 * 2 1 4 4 H 1.48501 * 109.47090 * 240.00448 * 3 2 1 5 5 H 1.48496 * 109.47310 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46789 * 120.00613 * 3 2 1 7 7 C 1.38651 * 119.99855 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00518 * 179.97438 * 7 2 1 9 9 O 1.34831 * 119.99899 * 359.97438 * 7 2 1 10 10 C 1.35756 * 117.00019 * 185.06419 * 9 7 2 11 11 C 1.38900 * 120.07042 * 354.40447 * 10 9 7 12 12 C 1.38072 * 119.93127 * 179.97438 * 11 10 9 13 13 C 1.38327 * 120.07136 * 0.02602 * 12 11 10 14 14 C 1.38275 * 120.13722 * 359.97438 * 13 12 11 15 15 C 1.38131 * 120.06710 * 359.97438 * 14 13 12 16 16 C 1.50700 * 120.03134 * 180.02562 * 15 14 13 17 17 N 1.46902 * 109.46894 * 259.99738 * 16 15 14 18 18 C 1.46904 * 110.99855 * 180.02562 * 17 16 15 19 19 C 1.52999 * 109.47111 * 179.97438 * 18 17 16 20 20 C 1.53000 * 117.50180 * 243.74647 * 19 18 17 21 21 C 1.52999 * 117.49994 * 175.08353 * 19 18 17 22 22 H 0.97002 * 119.99818 * 359.97438 * 1 2 3 23 23 H 1.08002 * 120.02889 * 0.02562 * 11 10 9 24 24 H 1.08002 * 119.96071 * 180.29951 * 12 11 10 25 25 H 1.08000 * 119.93033 * 179.97438 * 13 12 11 26 26 H 1.07997 * 119.96741 * 179.97438 * 14 13 12 27 27 H 1.08998 * 109.47263 * 19.99939 * 16 15 14 28 28 H 1.09005 * 109.46836 * 139.99745 * 16 15 14 29 29 H 1.00901 * 110.99784 * 303.94829 * 17 16 15 30 30 H 1.08996 * 109.46964 * 299.99923 * 18 17 16 31 31 H 1.09003 * 109.46956 * 60.00016 * 18 17 16 32 32 H 1.09006 * 115.54905 * 29.41668 * 19 18 17 33 33 H 1.08998 * 117.49332 * 359.97438 * 20 19 18 34 34 H 1.09002 * 117.49746 * 145.02158 * 20 19 18 35 35 H 1.09002 * 117.49976 * 214.98474 * 21 19 18 36 36 H 1.09009 * 117.49859 * 0.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1033 1.6964 -1.2126 5 1 1.2847 2.7465 0.0006 6 1 3.1034 1.6962 1.2124 7 6 2.0088 -1.2008 -0.0005 8 1 3.0887 -1.2009 -0.0010 9 8 1.3346 -2.3684 -0.0005 10 6 2.0699 -3.5047 0.1057 11 6 3.4573 -3.4398 0.0911 12 6 4.2023 -4.5971 0.1999 13 6 3.5684 -5.8205 0.3227 14 6 2.1874 -5.8884 0.3376 15 6 1.4365 -4.7340 0.2302 16 6 -0.0685 -4.8090 0.2471 17 7 -0.5783 -4.7261 -1.1282 18 6 -2.0455 -4.7955 -1.1508 19 6 -2.5381 -4.7056 -2.5965 20 6 -3.3920 -3.4947 -2.9780 21 6 -4.0384 -4.8757 -2.8436 22 1 -0.4850 0.8401 0.0004 23 1 3.9527 -2.4848 -0.0044 24 1 5.2811 -4.5467 0.1935 25 1 4.1534 -6.7244 0.4073 26 1 1.6954 -6.8451 0.4332 27 1 -0.3803 -5.7530 0.6939 28 1 -0.4670 -3.9806 0.8329 29 1 -0.2491 -3.8893 -1.5860 30 1 -2.3714 -5.7392 -0.7136 31 1 -2.4574 -3.9668 -0.5748 32 1 -1.8561 -5.0982 -3.3508 33 1 -3.6031 -2.7623 -2.1988 34 1 -3.2720 -3.0909 -3.9834 35 1 -4.3435 -5.3800 -3.7605 36 1 -4.6746 -5.0513 -1.9760 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035258315.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:37 Heat of formation + Delta-G solvation = 16.773534 kcal Electronic energy + Delta-G solvation = -17510.675827 eV Core-core repulsion = 14768.004652 eV Total energy + Delta-G solvation = -2742.671176 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.16955 -37.53401 -36.38237 -34.63388 -32.28349 -30.64247 -28.88527 -26.32187 -25.34481 -23.25314 -22.17119 -21.56858 -20.53889 -20.05411 -17.93299 -16.81666 -16.00320 -15.04693 -14.76515 -14.52097 -14.35474 -14.02925 -13.78328 -13.47110 -13.25237 -12.75844 -12.45313 -11.98356 -11.68952 -11.54511 -11.34380 -11.28348 -10.97833 -10.82879 -10.66293 -10.53506 -10.40838 -10.09457 -9.73098 -9.31588 -8.84478 -8.12382 -7.79262 -7.18832 -6.46179 -4.04668 2.18188 2.41634 3.12464 3.13445 3.15696 3.95866 3.98548 4.47913 4.78162 5.06248 5.10902 5.13769 5.25722 5.43881 5.60379 5.64536 5.70546 5.76924 5.88151 5.90790 6.01703 6.09313 6.09750 6.17863 6.29261 6.33776 6.47128 6.52114 6.74296 6.93938 7.11840 7.28921 7.39831 7.43936 7.60072 7.86537 7.94988 8.03503 9.00372 9.69143 10.71482 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.013259 B = 0.008368 C = 0.005360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.263050 B = 3345.407043 C = 5222.521834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.041 3.959 3 Si 0.938 3.062 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.271 1.271 7 C -0.391 4.391 8 H 0.090 0.910 9 O -0.177 6.177 10 C 0.157 3.843 11 C -0.234 4.234 12 C -0.075 4.075 13 C -0.214 4.214 14 C -0.060 4.060 15 C -0.157 4.157 16 C 0.118 3.882 17 N -0.682 5.682 18 C 0.089 3.911 19 C -0.144 4.144 20 C -0.181 4.181 21 C -0.182 4.182 22 H 0.269 0.731 23 H 0.126 0.874 24 H 0.105 0.895 25 H 0.105 0.895 26 H 0.111 0.889 27 H 0.064 0.936 28 H 0.041 0.959 29 H 0.352 0.648 30 H 0.067 0.933 31 H 0.031 0.969 32 H 0.109 0.891 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.829 -7.167 -2.029 7.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.163 4.163 3 Si 0.763 3.237 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.196 1.196 7 C -0.468 4.468 8 H 0.107 0.893 9 O -0.080 6.080 10 C 0.103 3.897 11 C -0.253 4.253 12 C -0.094 4.094 13 C -0.233 4.233 14 C -0.079 4.079 15 C -0.158 4.158 16 C -0.010 4.010 17 N -0.314 5.314 18 C -0.040 4.040 19 C -0.163 4.163 20 C -0.218 4.218 21 C -0.220 4.220 22 H 0.079 0.921 23 H 0.143 0.857 24 H 0.124 0.876 25 H 0.123 0.877 26 H 0.129 0.871 27 H 0.082 0.918 28 H 0.059 0.941 29 H 0.171 0.829 30 H 0.085 0.915 31 H 0.050 0.950 32 H 0.127 0.873 33 H 0.113 0.887 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.201 -7.605 -2.163 8.207 hybrid contribution 0.409 1.767 0.303 1.839 sum -1.792 -5.838 -1.860 6.384 Atomic orbital electron populations 1.70013 1.05844 1.27639 1.46317 1.25224 0.95815 0.98660 0.96598 0.85821 0.78737 0.79970 0.79159 1.19544 1.20348 1.19587 1.21246 0.91750 0.80855 1.52934 0.89270 1.83943 1.34136 1.11270 1.78669 1.19220 0.90212 0.87685 0.92533 1.21147 0.93761 0.98969 1.11455 1.20753 0.98393 0.92507 0.97740 1.20589 0.94348 0.96900 1.11487 1.20538 0.93425 0.96211 0.97725 1.18845 0.94608 0.90935 1.11448 1.20477 0.91041 0.99990 0.89483 1.60676 1.07377 1.46050 1.17282 1.21461 0.88979 1.00119 0.93471 1.22308 0.92934 1.02494 0.98560 1.23060 1.04609 0.91327 1.02822 1.22920 0.95681 1.00613 1.02786 0.92103 0.85655 0.87641 0.87720 0.87083 0.91779 0.94062 0.82894 0.91459 0.95037 0.87257 0.88672 0.89082 0.89141 0.89114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.59 13.67 55.48 0.76 -23.83 16 2 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 3 Si 0.94 20.36 29.55 -169.99 -5.02 15.34 16 4 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 5 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 6 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 7 C -0.39 -10.71 9.49 30.88 0.29 -10.41 16 8 H 0.09 2.29 5.20 -52.49 -0.27 2.01 16 9 O -0.18 -4.82 8.95 0.03 0.00 -4.82 16 10 C 0.16 3.75 6.62 -39.11 -0.26 3.49 16 11 C -0.23 -5.13 9.17 -39.40 -0.36 -5.49 16 12 C -0.08 -1.42 10.04 -39.61 -0.40 -1.81 16 13 C -0.21 -3.81 10.04 -39.53 -0.40 -4.21 16 14 C -0.06 -1.11 9.66 -39.61 -0.38 -1.49 16 15 C -0.16 -3.29 5.41 -104.43 -0.56 -3.86 16 16 C 0.12 2.32 5.48 -4.98 -0.03 2.29 16 17 N -0.68 -12.88 6.49 -115.05 -0.75 -13.63 16 18 C 0.09 1.46 5.97 -3.82 -0.02 1.43 16 19 C -0.14 -2.12 5.94 -90.62 -0.54 -2.65 16 20 C -0.18 -2.54 10.18 -26.69 -0.27 -2.81 16 21 C -0.18 -2.23 10.25 -26.69 -0.27 -2.51 16 22 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 23 H 0.13 2.74 5.64 -52.49 -0.30 2.44 16 24 H 0.11 1.67 8.06 -52.49 -0.42 1.24 16 25 H 0.10 1.56 8.06 -52.49 -0.42 1.14 16 26 H 0.11 1.76 8.04 -52.49 -0.42 1.34 16 27 H 0.06 1.10 8.00 -51.93 -0.42 0.68 16 28 H 0.04 0.91 7.86 -51.93 -0.41 0.50 16 29 H 0.35 7.53 8.67 -39.29 -0.34 7.19 16 30 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.03 0.56 7.87 -51.93 -0.41 0.15 16 32 H 0.11 1.63 8.14 -51.93 -0.42 1.20 16 33 H 0.09 1.42 8.03 -51.93 -0.42 1.01 16 34 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.09 1.04 8.14 -51.92 -0.42 0.62 16 LS Contribution 308.19 15.07 4.64 4.64 Total: -1.00 -28.52 308.19 -8.74 -37.27 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -5.08 Total: 12.06 kcal Atomic # 6 Polarization: -23.73 SS G_CDS: -3.30 Total: -27.03 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: 0.01 Total: -37.46 kcal Atomic # 8 Polarization: -4.82 SS G_CDS: 0.00 Total: -4.82 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.52 -8.74 -37.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035258315.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.040 kcal (2) G-P(sol) polarization free energy of solvation -28.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds