Wall clock time and date at job start Mon Mar 30 2020 06:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86800 * 120.00223 * 2 1 4 4 H 1.48501 * 109.47090 * 240.00448 * 3 2 1 5 5 H 1.48496 * 109.47310 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46789 * 120.00613 * 3 2 1 7 7 C 1.38651 * 119.99855 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00518 * 179.97438 * 7 2 1 9 9 O 1.34831 * 119.99899 * 359.97438 * 7 2 1 10 10 C 1.35756 * 117.00019 * 185.06419 * 9 7 2 11 11 C 1.38900 * 120.07042 * 354.40447 * 10 9 7 12 12 C 1.38072 * 119.93127 * 179.97438 * 11 10 9 13 13 C 1.38327 * 120.07136 * 0.02602 * 12 11 10 14 14 C 1.38275 * 120.13722 * 359.97438 * 13 12 11 15 15 C 1.38131 * 120.06710 * 359.97438 * 14 13 12 16 16 C 1.50700 * 120.03134 * 180.02562 * 15 14 13 17 17 N 1.46902 * 109.46894 * 259.99738 * 16 15 14 18 18 C 1.46904 * 110.99855 * 180.02562 * 17 16 15 19 19 C 1.52999 * 109.47111 * 179.97438 * 18 17 16 20 20 C 1.53000 * 117.50180 * 243.74647 * 19 18 17 21 21 C 1.52999 * 117.49994 * 175.08353 * 19 18 17 22 22 H 0.97002 * 119.99818 * 359.97438 * 1 2 3 23 23 H 1.08002 * 120.02889 * 0.02562 * 11 10 9 24 24 H 1.08002 * 119.96071 * 180.29951 * 12 11 10 25 25 H 1.08000 * 119.93033 * 179.97438 * 13 12 11 26 26 H 1.07997 * 119.96741 * 179.97438 * 14 13 12 27 27 H 1.08998 * 109.47263 * 19.99939 * 16 15 14 28 28 H 1.09005 * 109.46836 * 139.99745 * 16 15 14 29 29 H 1.00901 * 110.99784 * 303.94829 * 17 16 15 30 30 H 1.08996 * 109.46964 * 299.99923 * 18 17 16 31 31 H 1.09003 * 109.46956 * 60.00016 * 18 17 16 32 32 H 1.09006 * 115.54905 * 29.41668 * 19 18 17 33 33 H 1.08998 * 117.49332 * 359.97438 * 20 19 18 34 34 H 1.09002 * 117.49746 * 145.02158 * 20 19 18 35 35 H 1.09002 * 117.49976 * 214.98474 * 21 19 18 36 36 H 1.09009 * 117.49859 * 0.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1033 1.6964 -1.2126 5 1 1.2847 2.7465 0.0006 6 1 3.1034 1.6962 1.2124 7 6 2.0088 -1.2008 -0.0005 8 1 3.0887 -1.2009 -0.0010 9 8 1.3346 -2.3684 -0.0005 10 6 2.0699 -3.5047 0.1057 11 6 3.4573 -3.4398 0.0911 12 6 4.2023 -4.5971 0.1999 13 6 3.5684 -5.8205 0.3227 14 6 2.1874 -5.8884 0.3376 15 6 1.4365 -4.7340 0.2302 16 6 -0.0685 -4.8090 0.2471 17 7 -0.5783 -4.7261 -1.1282 18 6 -2.0455 -4.7955 -1.1508 19 6 -2.5381 -4.7056 -2.5965 20 6 -3.3920 -3.4947 -2.9780 21 6 -4.0384 -4.8757 -2.8436 22 1 -0.4850 0.8401 0.0004 23 1 3.9527 -2.4848 -0.0044 24 1 5.2811 -4.5467 0.1935 25 1 4.1534 -6.7244 0.4073 26 1 1.6954 -6.8451 0.4332 27 1 -0.3803 -5.7530 0.6939 28 1 -0.4670 -3.9806 0.8329 29 1 -0.2491 -3.8893 -1.5860 30 1 -2.3714 -5.7392 -0.7136 31 1 -2.4574 -3.9668 -0.5748 32 1 -1.8561 -5.0982 -3.3508 33 1 -3.6031 -2.7623 -2.1988 34 1 -3.2720 -3.0909 -3.9834 35 1 -4.3435 -5.3800 -3.7605 36 1 -4.6746 -5.0513 -1.9760 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035258315.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:36 Heat of formation + Delta-G solvation = -0.376392 kcal Electronic energy + Delta-G solvation = -17511.419504 eV Core-core repulsion = 14768.004652 eV Total energy + Delta-G solvation = -2743.414852 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.86764 -38.78183 -38.08760 -36.06561 -34.25805 -32.17697 -30.52242 -27.83556 -27.25074 -24.72539 -23.28173 -23.21476 -22.05622 -21.35776 -19.77340 -18.61368 -17.37696 -16.51303 -16.48760 -16.10621 -15.94225 -15.42344 -15.38930 -15.04102 -14.79913 -14.44901 -13.92354 -13.56839 -13.44619 -12.98936 -12.95527 -12.50030 -12.39842 -12.31378 -12.27850 -12.14010 -11.97719 -11.28563 -11.07986 -10.88011 -10.78597 -9.69090 -9.36921 -8.90735 -8.45419 -6.11819 0.59459 0.80058 1.33793 1.43852 1.48553 2.17198 2.81082 2.89417 3.12631 3.43428 3.54965 3.89263 3.99650 4.08236 4.10699 4.19029 4.34547 4.45715 4.50607 4.62134 4.65095 4.73165 4.76316 4.81600 4.88299 5.00034 5.14975 5.19135 5.23370 5.31044 5.35812 5.70161 5.76496 5.82284 6.01986 6.10523 6.30338 6.31587 7.00226 7.80701 8.76257 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.013259 B = 0.008368 C = 0.005360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.263050 B = 3345.407043 C = 5222.521834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.018 4.018 3 Si 1.011 2.989 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.260 1.260 7 C -0.412 4.412 8 H 0.096 0.904 9 O -0.219 6.219 10 C 0.118 3.882 11 C -0.251 4.251 12 C -0.076 4.076 13 C -0.193 4.193 14 C -0.060 4.060 15 C -0.167 4.167 16 C 0.124 3.876 17 N -0.677 5.677 18 C 0.091 3.909 19 C -0.160 4.160 20 C -0.197 4.197 21 C -0.151 4.151 22 H 0.270 0.730 23 H 0.115 0.885 24 H 0.141 0.859 25 H 0.149 0.851 26 H 0.147 0.853 27 H 0.095 0.905 28 H 0.003 0.997 29 H 0.332 0.668 30 H 0.088 0.912 31 H 0.009 0.991 32 H 0.108 0.892 33 H 0.077 0.923 34 H 0.099 0.901 35 H 0.115 0.885 36 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.591 -9.493 -2.271 9.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.215 4.215 3 Si 0.831 3.169 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.185 1.185 7 C -0.489 4.489 8 H 0.114 0.886 9 O -0.126 6.126 10 C 0.067 3.933 11 C -0.270 4.270 12 C -0.094 4.094 13 C -0.211 4.211 14 C -0.078 4.078 15 C -0.168 4.168 16 C -0.005 4.005 17 N -0.306 5.306 18 C -0.038 4.038 19 C -0.179 4.179 20 C -0.234 4.234 21 C -0.188 4.188 22 H 0.079 0.921 23 H 0.133 0.867 24 H 0.159 0.841 25 H 0.167 0.833 26 H 0.164 0.836 27 H 0.113 0.887 28 H 0.021 0.979 29 H 0.149 0.851 30 H 0.106 0.894 31 H 0.027 0.973 32 H 0.126 0.874 33 H 0.095 0.905 34 H 0.117 0.883 35 H 0.133 0.867 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.940 -9.990 -2.400 10.317 hybrid contribution 0.120 2.191 0.406 2.231 sum -0.820 -7.799 -1.994 8.092 Atomic orbital electron populations 1.70165 1.07714 1.28498 1.48879 1.26413 0.96770 1.02299 0.96064 0.84744 0.77472 0.74898 0.79749 1.18364 1.19779 1.18476 1.21699 0.92344 0.81692 1.53119 0.88632 1.83925 1.35279 1.12067 1.81286 1.19789 0.91395 0.87827 0.94296 1.21297 0.93335 1.00112 1.12282 1.21166 1.00141 0.91692 0.96368 1.21159 0.94345 0.98017 1.07624 1.20993 0.94051 0.96516 0.96241 1.19215 0.95501 0.90996 1.11135 1.20461 0.90622 0.99867 0.89525 1.60785 1.08924 1.44474 1.16454 1.21532 0.87355 1.00161 0.94778 1.22249 0.94730 1.03648 0.97230 1.23080 1.05730 0.91901 1.02679 1.23029 0.93455 0.98206 1.04120 0.92128 0.86695 0.84115 0.83308 0.83558 0.88711 0.97892 0.85126 0.89380 0.97298 0.87387 0.90487 0.88302 0.86722 0.88073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.27 13.67 21.61 0.30 -54.98 16 2 C -0.02 -0.99 5.49 84.83 0.47 -0.52 16 3 Si 1.01 43.02 29.55 68.60 2.03 45.05 16 4 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 5 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 6 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 7 C -0.41 -23.78 9.49 67.92 0.64 -23.13 16 8 H 0.10 5.14 5.20 -2.91 -0.02 5.12 16 9 O -0.22 -12.77 8.95 -22.82 -0.20 -12.98 16 10 C 0.12 5.80 6.62 22.58 0.15 5.95 16 11 C -0.25 -11.05 9.17 22.39 0.21 -10.84 16 12 C -0.08 -2.62 10.04 22.25 0.22 -2.39 16 13 C -0.19 -5.99 10.04 22.30 0.22 -5.77 16 14 C -0.06 -2.01 9.66 22.25 0.22 -1.79 16 15 C -0.17 -7.00 5.41 -19.74 -0.11 -7.11 16 16 C 0.12 4.94 5.48 85.56 0.47 5.41 16 17 N -0.68 -26.25 6.49 -517.92 -3.36 -29.61 16 18 C 0.09 3.01 5.97 86.30 0.51 3.53 16 19 C -0.16 -4.66 5.94 -10.79 -0.06 -4.72 16 20 C -0.20 -5.60 10.18 30.62 0.31 -5.29 16 21 C -0.15 -3.42 10.25 30.62 0.31 -3.10 16 22 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 23 H 0.12 5.17 5.64 -2.91 -0.02 5.16 16 24 H 0.14 3.86 8.06 -2.91 -0.02 3.83 16 25 H 0.15 3.42 8.06 -2.91 -0.02 3.39 16 26 H 0.15 3.91 8.04 -2.91 -0.02 3.89 16 27 H 0.09 3.12 8.00 -2.39 -0.02 3.10 16 28 H 0.00 0.13 7.86 -2.38 -0.02 0.12 16 29 H 0.33 15.14 8.67 -89.69 -0.78 14.37 16 30 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 31 H 0.01 0.33 7.87 -2.39 -0.02 0.31 16 32 H 0.11 3.18 8.14 -2.38 -0.02 3.16 16 33 H 0.08 2.45 8.03 -2.39 -0.02 2.43 16 34 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 35 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.10 2.10 8.14 -2.38 -0.02 2.08 16 Total: -1.00 -66.45 308.19 2.62 -63.83 By element: Atomic # 1 Polarization: 38.17 SS G_CDS: 0.30 Total: 38.47 kcal Atomic # 6 Polarization: -53.36 SS G_CDS: 3.57 Total: -49.79 kcal Atomic # 7 Polarization: -81.52 SS G_CDS: -3.07 Total: -84.59 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: -0.20 Total: -12.98 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -66.45 2.62 -63.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035258315.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.453 kcal (2) G-P(sol) polarization free energy of solvation -66.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds