Wall clock time and date at job start Mon Mar 30 2020 06:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30900 * 1 3 3 Si 1.86803 * 119.99982 * 2 1 4 4 H 1.48491 * 109.46963 * 269.99970 * 3 2 1 5 5 H 1.48497 * 109.46924 * 30.00293 * 3 2 1 6 6 H 1.48499 * 109.47172 * 150.00122 * 3 2 1 7 7 C 1.39868 * 119.99920 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99746 * 161.55211 * 7 2 1 9 9 C 1.41129 * 120.00248 * 341.82597 * 7 2 1 10 10 C 1.40885 * 120.15675 * 335.22311 * 9 7 2 11 11 C 1.36336 * 119.83733 * 179.73510 * 10 9 7 12 12 C 1.39564 * 120.16217 * 0.51719 * 11 10 9 13 13 N 1.38851 * 119.84630 * 179.73825 * 12 11 10 14 14 C 1.46508 * 120.00005 * 0.02562 * 13 12 11 15 15 C 1.53002 * 109.47201 * 180.02562 * 14 13 12 16 16 H 1.08995 * 110.80429 * 308.62835 * 15 14 13 17 17 C 1.54806 * 110.90455 * 184.99750 * 15 14 13 18 18 C 1.54093 * 104.19051 * 220.92018 * 17 15 14 19 19 O 1.43750 * 107.29314 * 357.97467 * 18 17 15 20 20 C 1.44377 * 106.97265 * 26.50940 * 19 18 17 21 21 C 1.39568 * 120.31519 * 359.75299 * 12 11 10 22 22 C 1.36341 * 120.16141 * 359.97438 * 21 12 11 23 23 H 0.96995 * 119.99876 * 359.97438 * 1 2 3 24 24 H 1.07997 * 120.07939 * 359.97140 * 10 9 7 25 25 H 1.08000 * 119.91909 * 180.24928 * 11 10 9 26 26 H 0.97001 * 120.00154 * 180.02562 * 13 12 11 27 27 H 1.08999 * 109.46469 * 300.00505 * 14 13 12 28 28 H 1.09002 * 109.46844 * 59.99806 * 14 13 12 29 29 H 1.09000 * 110.49214 * 339.60463 * 17 15 14 30 30 H 1.09009 * 110.48541 * 102.24324 * 17 15 14 31 31 H 1.09003 * 109.87930 * 117.39744 * 18 17 15 32 32 H 1.08999 * 109.88465 * 238.54773 * 18 17 15 33 33 H 1.08998 * 110.61606 * 201.43828 * 20 19 18 34 34 H 1.09002 * 110.61495 * 78.44288 * 20 19 18 35 35 H 1.08002 * 119.91872 * 179.97438 * 21 12 11 36 36 H 1.07999 * 120.08364 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 2.4905 2.0464 -1.4000 5 1 1.4405 2.6526 0.7001 6 1 3.5406 1.4402 0.7000 7 6 2.0083 -1.2113 0.0005 8 1 3.0468 -1.2354 -0.2954 9 6 1.3555 -2.4029 0.3823 10 6 0.2321 -2.3538 1.2310 11 6 -0.3969 -3.5085 1.5913 12 6 0.0761 -4.7379 1.1302 13 7 -0.5662 -5.9103 1.5057 14 6 -1.7379 -5.8548 2.3834 15 6 -2.2499 -7.2735 2.6409 16 1 -2.3894 -7.8109 1.7030 17 6 -3.5614 -7.2467 3.4628 18 6 -3.4018 -8.4047 4.4668 19 8 -2.1435 -9.0414 4.1882 20 6 -1.2915 -8.0447 3.5839 21 6 1.1919 -4.7947 0.2938 22 6 1.8275 -3.6476 -0.0792 23 1 -0.4850 0.8400 0.0004 24 1 -0.1323 -1.4034 1.5922 25 1 -1.2606 -3.4721 2.2386 26 1 -0.2391 -6.7660 1.1869 27 1 -1.4609 -5.3913 3.3303 28 1 -2.5216 -5.2663 1.9064 29 1 -3.6630 -6.2972 3.9885 30 1 -4.4211 -7.4190 2.8151 31 1 -3.4029 -8.0154 5.4849 32 1 -4.2149 -9.1196 4.3405 33 1 -0.4914 -8.5178 3.0146 34 1 -0.8818 -7.3786 4.3432 35 1 1.5528 -5.7496 -0.0589 36 1 2.6906 -3.6929 -0.7268 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037071497.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:27 Heat of formation + Delta-G solvation = -31.444638 kcal Electronic energy + Delta-G solvation = -17163.468826 eV Core-core repulsion = 14418.706753 eV Total energy + Delta-G solvation = -2744.762072 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.60726 -37.88419 -35.35981 -33.41430 -31.94537 -29.70929 -29.46514 -28.25541 -25.54572 -23.89603 -22.53525 -21.40599 -20.37296 -19.87058 -17.20967 -16.75176 -16.37182 -15.55711 -15.29617 -14.97682 -14.56435 -14.11362 -13.80546 -13.28808 -12.78194 -12.72553 -12.44099 -12.06016 -11.78135 -11.67475 -11.51459 -11.24060 -11.00175 -10.89853 -10.75798 -10.73294 -10.44728 -9.82092 -9.71296 -9.29444 -9.21788 -8.54032 -7.49940 -6.65101 -6.40171 -4.03586 2.91465 3.09681 3.14610 3.19428 3.35216 3.78813 4.05218 4.16316 4.52932 4.64592 4.75877 4.82982 4.99227 5.16873 5.34759 5.53510 5.56388 5.68554 5.74510 5.78548 5.83096 6.04033 6.16184 6.26706 6.31709 6.71092 6.91909 6.93350 7.19851 7.35323 7.54388 7.68394 7.83296 8.14926 8.28237 8.48289 8.68893 8.79088 9.05735 9.14846 10.36735 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.050591 B = 0.004039 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.322765 B = 6930.724048 C = 7273.954206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.075 3.925 3 Si 0.902 3.098 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.468 4.468 8 H 0.072 0.928 9 C 0.076 3.924 10 C -0.126 4.126 11 C -0.163 4.163 12 C 0.089 3.911 13 N -0.763 5.763 14 C 0.150 3.850 15 C -0.131 4.131 16 H 0.088 0.912 17 C -0.149 4.149 18 C 0.047 3.953 19 O -0.383 6.383 20 C 0.053 3.947 21 C -0.158 4.158 22 C -0.187 4.187 23 H 0.276 0.724 24 H 0.117 0.883 25 H 0.087 0.913 26 H 0.384 0.616 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.057 0.943 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.064 0.936 35 H 0.086 0.914 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.000 -10.159 6.112 13.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.198 1.198 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.499 4.499 8 H 0.091 0.909 9 C 0.073 3.927 10 C -0.146 4.146 11 C -0.185 4.185 12 C -0.007 4.007 13 N -0.399 5.399 14 C 0.024 3.976 15 C -0.150 4.150 16 H 0.106 0.894 17 C -0.188 4.188 18 C -0.030 4.030 19 O -0.302 6.302 20 C -0.023 4.023 21 C -0.180 4.180 22 C -0.208 4.208 23 H 0.087 0.913 24 H 0.135 0.865 25 H 0.105 0.895 26 H 0.216 0.784 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.076 0.924 32 H 0.099 0.901 33 H 0.111 0.889 34 H 0.083 0.917 35 H 0.104 0.896 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.283 -10.102 6.259 13.443 hybrid contribution 0.295 0.765 -0.274 0.864 sum -5.988 -9.337 5.985 12.604 Atomic orbital electron populations 1.69857 1.07396 1.28638 1.37551 1.25794 0.94633 1.00898 0.92665 0.86426 0.80674 0.81229 0.78990 1.19773 1.20330 1.18681 1.19365 0.98083 0.91436 1.40994 0.90941 1.17492 0.92406 0.91981 0.90863 1.20916 0.98264 0.96424 0.98950 1.20077 1.01489 0.91938 1.04966 1.17332 0.95799 0.85613 1.02003 1.43843 1.32938 1.05866 1.57226 1.20946 0.88793 0.93616 0.94214 1.22948 0.94968 0.97465 0.99653 0.89352 1.22930 0.98100 0.99626 0.98114 1.23140 0.87024 0.94740 0.98049 1.88852 1.24446 1.35081 1.81835 1.23650 0.93447 0.90335 0.94879 1.19810 0.97914 0.97065 1.03186 1.20547 1.02743 0.92607 1.04875 0.91324 0.86472 0.89494 0.78412 0.93256 0.93099 0.90159 0.90291 0.92439 0.90057 0.88929 0.91730 0.89600 0.89047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.46 10.99 55.54 0.61 -20.85 16 2 C 0.08 1.95 5.12 -17.34 -0.09 1.86 16 3 Si 0.90 19.21 29.60 -169.99 -5.03 14.18 16 4 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 5 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 6 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 7 C -0.47 -12.75 9.03 -37.88 -0.34 -13.10 16 8 H 0.07 1.91 7.91 -52.48 -0.42 1.49 16 9 C 0.08 2.05 5.57 -106.80 -0.59 1.45 16 10 C -0.13 -3.30 8.63 -39.27 -0.34 -3.64 16 11 C -0.16 -3.81 9.23 -39.77 -0.37 -4.17 16 12 C 0.09 1.93 6.67 -83.69 -0.56 1.38 16 13 N -0.76 -12.93 5.64 -58.49 -0.33 -13.26 16 14 C 0.15 2.14 4.23 -4.04 -0.02 2.12 16 15 C -0.13 -1.48 3.13 -88.61 -0.28 -1.76 16 16 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 17 C -0.15 -1.42 6.60 -25.21 -0.17 -1.59 16 18 C 0.05 0.46 7.70 37.73 0.29 0.75 16 19 O -0.38 -4.78 11.52 -35.23 -0.41 -5.18 16 20 C 0.05 0.62 7.11 38.21 0.27 0.89 16 21 C -0.16 -3.54 9.82 -39.77 -0.39 -3.93 16 22 C -0.19 -4.66 9.74 -39.26 -0.38 -5.04 16 23 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 24 H 0.12 3.19 6.18 -52.49 -0.32 2.86 16 25 H 0.09 1.85 6.68 -52.49 -0.35 1.50 16 26 H 0.38 5.77 8.47 -40.82 -0.35 5.42 16 27 H 0.05 0.73 7.76 -51.93 -0.40 0.33 16 28 H 0.05 0.77 7.93 -51.93 -0.41 0.36 16 29 H 0.08 0.73 7.86 -51.93 -0.41 0.32 16 30 H 0.08 0.66 8.14 -51.92 -0.42 0.24 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.06 0.76 7.93 -51.93 -0.41 0.35 16 35 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 36 H 0.09 2.15 8.06 -52.49 -0.42 1.72 16 LS Contribution 297.50 15.07 4.48 4.48 Total: -1.00 -28.74 297.50 -8.80 -37.54 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -5.16 Total: 7.87 kcal Atomic # 6 Polarization: -21.82 SS G_CDS: -2.96 Total: -24.78 kcal Atomic # 7 Polarization: -34.39 SS G_CDS: 0.28 Total: -34.11 kcal Atomic # 8 Polarization: -4.78 SS G_CDS: -0.41 Total: -5.18 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.03 Total: 14.18 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -28.74 -8.80 -37.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037071497.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.100 kcal (2) G-P(sol) polarization free energy of solvation -28.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds