Wall clock time and date at job start Mon Mar 30 2020 06:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30900 * 1 3 3 Si 1.86803 * 119.99982 * 2 1 4 4 H 1.48491 * 109.46963 * 269.99970 * 3 2 1 5 5 H 1.48497 * 109.46924 * 30.00293 * 3 2 1 6 6 H 1.48499 * 109.47172 * 150.00122 * 3 2 1 7 7 C 1.39868 * 119.99920 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99746 * 161.55211 * 7 2 1 9 9 C 1.41129 * 120.00248 * 341.82597 * 7 2 1 10 10 C 1.40885 * 120.15675 * 335.22311 * 9 7 2 11 11 C 1.36336 * 119.83733 * 179.73510 * 10 9 7 12 12 C 1.39564 * 120.16217 * 0.51719 * 11 10 9 13 13 N 1.38851 * 119.84630 * 179.73825 * 12 11 10 14 14 C 1.46508 * 120.00005 * 0.02562 * 13 12 11 15 15 C 1.53002 * 109.47201 * 180.02562 * 14 13 12 16 16 H 1.08995 * 110.80429 * 308.62835 * 15 14 13 17 17 C 1.54806 * 110.90455 * 184.99750 * 15 14 13 18 18 C 1.54093 * 104.19051 * 220.92018 * 17 15 14 19 19 O 1.43750 * 107.29314 * 357.97467 * 18 17 15 20 20 C 1.44377 * 106.97265 * 26.50940 * 19 18 17 21 21 C 1.39568 * 120.31519 * 359.75299 * 12 11 10 22 22 C 1.36341 * 120.16141 * 359.97438 * 21 12 11 23 23 H 0.96995 * 119.99876 * 359.97438 * 1 2 3 24 24 H 1.07997 * 120.07939 * 359.97140 * 10 9 7 25 25 H 1.08000 * 119.91909 * 180.24928 * 11 10 9 26 26 H 0.97001 * 120.00154 * 180.02562 * 13 12 11 27 27 H 1.08999 * 109.46469 * 300.00505 * 14 13 12 28 28 H 1.09002 * 109.46844 * 59.99806 * 14 13 12 29 29 H 1.09000 * 110.49214 * 339.60463 * 17 15 14 30 30 H 1.09009 * 110.48541 * 102.24324 * 17 15 14 31 31 H 1.09003 * 109.87930 * 117.39744 * 18 17 15 32 32 H 1.08999 * 109.88465 * 238.54773 * 18 17 15 33 33 H 1.08998 * 110.61606 * 201.43828 * 20 19 18 34 34 H 1.09002 * 110.61495 * 78.44288 * 20 19 18 35 35 H 1.08002 * 119.91872 * 179.97438 * 21 12 11 36 36 H 1.07999 * 120.08364 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 2.4905 2.0464 -1.4000 5 1 1.4405 2.6526 0.7001 6 1 3.5406 1.4402 0.7000 7 6 2.0083 -1.2113 0.0005 8 1 3.0468 -1.2354 -0.2954 9 6 1.3555 -2.4029 0.3823 10 6 0.2321 -2.3538 1.2310 11 6 -0.3969 -3.5085 1.5913 12 6 0.0761 -4.7379 1.1302 13 7 -0.5662 -5.9103 1.5057 14 6 -1.7379 -5.8548 2.3834 15 6 -2.2499 -7.2735 2.6409 16 1 -2.3894 -7.8109 1.7030 17 6 -3.5614 -7.2467 3.4628 18 6 -3.4018 -8.4047 4.4668 19 8 -2.1435 -9.0414 4.1882 20 6 -1.2915 -8.0447 3.5839 21 6 1.1919 -4.7947 0.2938 22 6 1.8275 -3.6476 -0.0792 23 1 -0.4850 0.8400 0.0004 24 1 -0.1323 -1.4034 1.5922 25 1 -1.2606 -3.4721 2.2386 26 1 -0.2391 -6.7660 1.1869 27 1 -1.4609 -5.3913 3.3303 28 1 -2.5216 -5.2663 1.9064 29 1 -3.6630 -6.2972 3.9885 30 1 -4.4211 -7.4190 2.8151 31 1 -3.4029 -8.0154 5.4849 32 1 -4.2149 -9.1196 4.3405 33 1 -0.4914 -8.5178 3.0146 34 1 -0.8818 -7.3786 4.3432 35 1 1.5528 -5.7496 -0.0589 36 1 2.6906 -3.6929 -0.7268 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037071497.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:26 Heat of formation + Delta-G solvation = -48.488642 kcal Electronic energy + Delta-G solvation = -17164.207909 eV Core-core repulsion = 14418.706753 eV Total energy + Delta-G solvation = -2745.501156 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.55316 -39.60436 -36.87872 -35.08358 -33.24106 -31.34676 -30.89552 -29.71855 -26.98917 -25.50245 -23.48682 -23.01567 -21.84203 -21.29698 -19.14915 -17.90940 -17.59083 -16.84365 -16.70826 -16.21189 -15.94909 -15.54768 -15.15550 -14.51079 -14.44553 -14.21724 -13.90626 -13.65394 -13.42186 -13.10651 -12.73398 -12.65850 -12.48200 -12.28210 -12.17167 -11.91241 -11.60338 -11.57003 -11.16958 -11.03830 -10.66384 -10.29105 -9.40277 -8.55294 -8.16762 -6.00413 1.11321 1.18873 1.40610 1.52619 1.60010 2.27818 2.80260 2.84835 3.02707 3.60021 3.78980 3.86066 3.93249 4.20321 4.31444 4.39404 4.45430 4.51474 4.64053 4.77212 4.81052 4.87537 4.93223 5.02026 5.08093 5.14778 5.22551 5.28930 5.46057 5.68961 5.80443 5.88664 5.96510 6.19281 6.39381 6.66799 6.86921 7.08764 7.14894 7.31540 8.48206 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.050591 B = 0.004039 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.322765 B = 6930.724048 C = 7273.954206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.033 3.967 3 Si 0.976 3.024 4 H -0.265 1.265 5 H -0.268 1.268 6 H -0.262 1.262 7 C -0.508 4.508 8 H 0.068 0.932 9 C 0.036 3.964 10 C -0.145 4.145 11 C -0.174 4.174 12 C 0.110 3.890 13 N -0.751 5.751 14 C 0.149 3.851 15 C -0.122 4.122 16 H 0.093 0.907 17 C -0.146 4.146 18 C 0.042 3.958 19 O -0.402 6.402 20 C 0.053 3.947 21 C -0.165 4.165 22 C -0.197 4.197 23 H 0.282 0.718 24 H 0.098 0.902 25 H 0.105 0.895 26 H 0.397 0.603 27 H 0.047 0.953 28 H 0.046 0.954 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.065 0.935 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.060 0.940 35 H 0.118 0.882 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.668 -11.340 6.529 14.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.179 4.179 3 Si 0.797 3.203 4 H -0.190 1.190 5 H -0.193 1.193 6 H -0.186 1.186 7 C -0.539 4.539 8 H 0.086 0.914 9 C 0.033 3.967 10 C -0.165 4.165 11 C -0.196 4.196 12 C 0.011 3.989 13 N -0.387 5.387 14 C 0.024 3.976 15 C -0.141 4.141 16 H 0.112 0.888 17 C -0.184 4.184 18 C -0.034 4.034 19 O -0.322 6.322 20 C -0.024 4.024 21 C -0.187 4.187 22 C -0.217 4.217 23 H 0.093 0.907 24 H 0.116 0.884 25 H 0.123 0.877 26 H 0.231 0.769 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.103 0.897 30 H 0.111 0.889 31 H 0.083 0.917 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.078 0.922 35 H 0.136 0.864 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.970 -11.335 6.686 14.892 hybrid contribution 0.419 0.925 -0.355 1.076 sum -6.551 -10.410 6.331 13.834 Atomic orbital electron populations 1.69917 1.08773 1.29817 1.38416 1.26603 0.95428 1.04079 0.91786 0.85313 0.79122 0.76615 0.79250 1.18972 1.19277 1.18564 1.19601 0.98203 0.92884 1.43218 0.91430 1.17818 0.93594 0.93040 0.92256 1.20849 0.99010 0.96727 0.99932 1.20241 1.02031 0.91859 1.05466 1.17439 0.94946 0.86625 0.99935 1.43893 1.33072 1.04920 1.56806 1.21061 0.87510 0.95710 0.93311 1.22834 0.95831 0.95257 1.00175 0.88844 1.22943 0.97500 0.99892 0.98056 1.23323 0.86445 0.95136 0.98495 1.88837 1.25564 1.35790 1.81993 1.23654 0.93617 0.90281 0.94829 1.20118 0.97864 0.97670 1.03023 1.20763 1.03117 0.92881 1.04935 0.90745 0.88420 0.87699 0.76861 0.93462 0.93534 0.89736 0.88854 0.91665 0.88439 0.88481 0.92201 0.86370 0.88544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.01 10.99 21.82 0.24 -45.77 16 2 C 0.03 1.75 5.12 85.23 0.44 2.18 16 3 Si 0.98 40.12 29.60 68.60 2.03 42.16 16 4 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 5 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 6 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 7 C -0.51 -28.70 9.03 23.37 0.21 -28.49 16 8 H 0.07 3.70 7.91 -2.91 -0.02 3.68 16 9 C 0.04 2.00 5.57 -21.27 -0.12 1.88 16 10 C -0.15 -7.84 8.63 22.47 0.19 -7.65 16 11 C -0.17 -8.09 9.23 22.15 0.20 -7.88 16 12 C 0.11 4.59 6.67 38.67 0.26 4.85 16 13 N -0.75 -23.53 5.64 -338.98 -1.91 -25.44 16 14 C 0.15 3.89 4.23 86.38 0.37 4.25 16 15 C -0.12 -2.42 3.13 -9.49 -0.03 -2.45 16 16 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 17 C -0.15 -2.34 6.60 31.58 0.21 -2.13 16 18 C 0.04 0.70 7.70 72.35 0.56 1.26 16 19 O -0.40 -9.11 11.52 -148.98 -1.72 -10.82 16 20 C 0.05 1.10 7.11 72.66 0.52 1.61 16 21 C -0.16 -7.15 9.82 22.15 0.22 -6.93 16 22 C -0.20 -9.86 9.74 22.48 0.22 -9.64 16 23 H 0.28 14.03 8.30 -92.71 -0.77 13.26 16 24 H 0.10 5.56 6.18 -2.91 -0.02 5.54 16 25 H 0.11 4.39 6.68 -2.91 -0.02 4.37 16 26 H 0.40 10.64 8.47 -92.71 -0.79 9.85 16 27 H 0.05 1.29 7.76 -2.39 -0.02 1.27 16 28 H 0.05 1.30 7.93 -2.39 -0.02 1.28 16 29 H 0.08 1.30 7.86 -2.39 -0.02 1.28 16 30 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 31 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.06 1.30 7.93 -2.39 -0.02 1.28 16 35 H 0.12 4.31 8.06 -2.91 -0.02 4.29 16 36 H 0.10 4.58 8.06 -2.91 -0.02 4.56 16 Total: -1.00 -62.81 297.50 2.17 -60.64 By element: Atomic # 1 Polarization: 28.10 SS G_CDS: 0.29 Total: 28.38 kcal Atomic # 6 Polarization: -52.38 SS G_CDS: 3.24 Total: -49.14 kcal Atomic # 7 Polarization: -69.54 SS G_CDS: -1.67 Total: -71.21 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: -1.72 Total: -10.82 kcal Atomic # 14 Polarization: 40.12 SS G_CDS: 2.03 Total: 42.16 kcal Total: -62.81 2.17 -60.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037071497.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.153 kcal (2) G-P(sol) polarization free energy of solvation -62.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds