Wall clock time and date at job start Mon Mar 30 2020 06:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30907 * 1 3 3 Si 1.86798 * 119.99913 * 2 1 4 4 H 1.48495 * 109.47047 * 239.99611 * 3 2 1 5 5 H 1.48495 * 109.47239 * 0.02562 * 3 2 1 6 6 H 1.48511 * 109.47048 * 119.99729 * 3 2 1 7 7 C 1.39866 * 119.99933 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99862 * 197.96899 * 7 2 1 9 9 C 1.41135 * 119.99937 * 17.96548 * 7 2 1 10 10 C 1.40882 * 120.15858 * 24.60998 * 9 7 2 11 11 C 1.36337 * 119.84061 * 179.97438 * 10 9 7 12 12 C 1.39575 * 120.15731 * 0.02999 * 11 10 9 13 13 N 1.38851 * 119.83808 * 179.69972 * 12 11 10 14 14 C 1.46506 * 119.99829 * 180.02562 * 13 12 11 15 15 C 1.52991 * 109.47260 * 180.02562 * 14 13 12 16 16 H 1.08999 * 110.75458 * 54.29610 * 15 14 13 17 17 C 1.55305 * 110.84962 * 177.77063 * 15 14 13 18 18 C 1.55205 * 100.82712 * 152.17733 * 17 15 14 19 19 O 1.43644 * 105.26311 * 323.81448 * 18 17 15 20 20 C 1.43246 * 109.96705 * 24.28525 * 19 18 17 21 21 C 1.39569 * 120.31610 * 359.97289 * 12 11 10 22 22 C 1.36339 * 120.16343 * 0.02562 * 21 12 11 23 23 H 0.96993 * 119.99841 * 0.02562 * 1 2 3 24 24 H 1.08005 * 120.07856 * 0.02562 * 10 9 7 25 25 H 1.07997 * 119.92100 * 180.02562 * 11 10 9 26 26 H 0.96995 * 120.00113 * 359.97438 * 13 12 11 27 27 H 1.09001 * 109.46550 * 299.99945 * 14 13 12 28 28 H 1.09005 * 109.47210 * 59.99321 * 14 13 12 29 29 H 1.08999 * 111.12198 * 270.23984 * 17 15 14 30 30 H 1.08997 * 111.12709 * 34.40128 * 17 15 14 31 31 H 1.09000 * 110.37101 * 204.80250 * 18 17 15 32 32 H 1.09001 * 110.21626 * 82.75222 * 18 17 15 33 33 H 1.09002 * 109.82771 * 238.76727 * 20 19 18 34 34 H 1.09003 * 109.89961 * 117.84807 * 20 19 18 35 35 H 1.08003 * 119.91777 * 179.97438 * 21 12 11 36 36 H 1.07995 * 120.08729 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 3.0968 1.6963 -1.2124 5 1 1.2781 2.7464 0.0006 6 1 3.0968 1.6964 1.2126 7 6 2.0084 -1.2113 0.0005 8 1 3.0489 -1.2339 0.2891 9 6 1.3543 -2.4039 -0.3759 10 6 0.2261 -2.3568 -1.2183 11 6 -0.4005 -3.5129 -1.5784 12 6 0.0729 -4.7410 -1.1139 13 7 -0.5740 -5.9139 -1.4797 14 6 -0.0804 -7.2049 -0.9937 15 6 -0.9648 -8.3274 -1.5400 16 1 -1.0323 -8.2719 -2.6265 17 6 -0.4362 -9.7165 -1.0894 18 6 -1.7509 -10.5413 -1.0851 19 8 -2.7664 -9.6320 -0.6322 20 6 -2.3686 -8.2820 -0.8993 21 6 1.1900 -4.7953 -0.2790 22 6 1.8266 -3.6472 0.0891 23 1 -0.4849 0.8400 -0.0004 24 1 -0.1411 -1.4072 -1.5787 25 1 -1.2652 -3.4783 -2.2244 26 1 -1.3532 -5.8785 -2.0563 27 1 0.9448 -7.3528 -1.3329 28 1 -0.1080 -7.2176 0.0959 29 1 0.2797 -10.1162 -1.8075 30 1 -0.0021 -9.6666 -0.0908 31 1 -1.6669 -11.3857 -0.4010 32 1 -1.9788 -10.8920 -2.0917 33 1 -2.3322 -7.7162 0.0317 34 1 -3.0743 -7.8165 -1.5873 35 1 1.5506 -5.7491 0.0770 36 1 2.6911 -3.6907 0.7349 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037071498.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:29 Heat of formation + Delta-G solvation = -31.368053 kcal Electronic energy + Delta-G solvation = -17138.137309 eV Core-core repulsion = 14393.378558 eV Total energy + Delta-G solvation = -2744.758751 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.61825 -37.88391 -35.38235 -33.40363 -31.95451 -29.86400 -29.37549 -28.22806 -25.57942 -23.93442 -22.44473 -21.38841 -20.31971 -20.00143 -17.19251 -16.90588 -16.41547 -15.58980 -15.20813 -14.84539 -14.68164 -14.00173 -13.78632 -13.28295 -12.88072 -12.78938 -12.40203 -11.97608 -11.88169 -11.72219 -11.46620 -11.25709 -11.01043 -10.95576 -10.84921 -10.77812 -10.44016 -9.69068 -9.63832 -9.30097 -9.22816 -8.54800 -7.49205 -6.64834 -6.40095 -4.03788 2.92777 3.10192 3.14403 3.17602 3.36094 3.74200 4.05024 4.08485 4.43338 4.69159 4.76598 4.78410 5.04710 5.11510 5.29488 5.50532 5.52648 5.67362 5.73947 5.80678 5.87807 5.98940 6.15631 6.27122 6.30069 6.83629 6.86079 7.06011 7.19991 7.30969 7.58306 7.66220 7.79378 8.14689 8.33738 8.47569 8.66183 8.79198 9.05863 9.14927 10.37275 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.066382 B = 0.003857 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.699530 B = 7257.355980 C = 7482.537343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.075 3.925 3 Si 0.904 3.096 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.468 4.468 8 H 0.072 0.928 9 C 0.076 3.924 10 C -0.123 4.123 11 C -0.162 4.162 12 C 0.089 3.911 13 N -0.763 5.763 14 C 0.151 3.849 15 C -0.133 4.133 16 H 0.087 0.913 17 C -0.149 4.149 18 C 0.051 3.949 19 O -0.388 6.388 20 C 0.056 3.944 21 C -0.159 4.159 22 C -0.190 4.190 23 H 0.277 0.723 24 H 0.119 0.881 25 H 0.086 0.914 26 H 0.384 0.616 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.086 0.914 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.125 -13.667 -3.233 14.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.140 4.140 3 Si 0.729 3.271 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.499 4.499 8 H 0.090 0.910 9 C 0.073 3.927 10 C -0.143 4.143 11 C -0.184 4.184 12 C -0.008 4.008 13 N -0.399 5.399 14 C 0.025 3.975 15 C -0.152 4.152 16 H 0.106 0.894 17 C -0.187 4.187 18 C -0.025 4.025 19 O -0.307 6.307 20 C -0.021 4.021 21 C -0.181 4.181 22 C -0.210 4.210 23 H 0.088 0.912 24 H 0.137 0.863 25 H 0.105 0.895 26 H 0.217 0.783 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.103 0.897 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.105 0.895 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.388 -13.659 -3.010 14.189 hybrid contribution 0.263 0.891 -0.281 0.971 sum -2.125 -12.769 -3.291 13.356 Atomic orbital electron populations 1.69846 1.07367 1.28754 1.37482 1.25799 0.94659 1.00893 0.92686 0.86455 0.80130 0.80812 0.79740 1.19083 1.20577 1.19264 1.19346 0.97937 0.91398 1.41239 0.90964 1.17493 0.92384 0.91991 0.90844 1.20921 0.98160 0.96366 0.98873 1.20041 1.01510 0.91891 1.04949 1.17334 0.96049 0.85156 1.02219 1.43850 1.34789 1.02520 1.58741 1.20934 0.96206 0.82526 0.97825 1.22956 0.95474 0.95398 1.01326 0.89433 1.23300 0.98048 0.94292 1.03030 1.23388 0.86532 0.93102 0.99498 1.88394 1.43365 1.15859 1.83116 1.23237 0.94551 0.83728 1.00536 1.19857 0.97983 0.97051 1.03189 1.20558 1.02803 0.92673 1.04976 0.91243 0.86330 0.89543 0.78345 0.93163 0.93179 0.89687 0.89931 0.89842 0.92368 0.90582 0.91474 0.89538 0.89123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.51 10.96 55.54 0.61 -20.90 16 2 C 0.07 1.94 5.13 -17.34 -0.09 1.85 16 3 Si 0.90 19.28 29.60 -169.99 -5.03 14.25 16 4 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 5 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 6 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 7 C -0.47 -12.79 9.03 -37.87 -0.34 -13.13 16 8 H 0.07 1.90 7.91 -52.48 -0.41 1.49 16 9 C 0.08 2.06 5.57 -106.79 -0.60 1.47 16 10 C -0.12 -3.24 8.64 -39.27 -0.34 -3.58 16 11 C -0.16 -3.79 9.82 -39.77 -0.39 -4.18 16 12 C 0.09 1.94 6.67 -83.69 -0.56 1.38 16 13 N -0.76 -12.98 5.58 -58.50 -0.33 -13.30 16 14 C 0.15 2.11 4.22 -4.04 -0.02 2.09 16 15 C -0.13 -1.46 3.02 -88.68 -0.27 -1.73 16 16 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 17 C -0.15 -1.35 6.64 -24.34 -0.16 -1.51 16 18 C 0.05 0.48 7.78 38.32 0.30 0.78 16 19 O -0.39 -4.94 11.36 -35.23 -0.40 -5.35 16 20 C 0.06 0.67 7.23 37.88 0.27 0.95 16 21 C -0.16 -3.58 9.23 -39.77 -0.37 -3.95 16 22 C -0.19 -4.74 9.74 -39.26 -0.38 -5.12 16 23 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 24 H 0.12 3.23 6.16 -52.48 -0.32 2.90 16 25 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 26 H 0.38 5.89 8.41 -40.82 -0.34 5.55 16 27 H 0.05 0.72 7.93 -51.93 -0.41 0.31 16 28 H 0.05 0.74 7.79 -51.93 -0.40 0.34 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.75 8.04 -51.93 -0.42 0.34 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 1.00 7.72 -51.93 -0.40 0.60 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.09 1.74 6.68 -52.48 -0.35 1.38 16 36 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 LS Contribution 297.30 15.07 4.48 4.48 Total: -1.00 -28.84 297.30 -8.77 -37.61 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -5.16 Total: 7.90 kcal Atomic # 6 Polarization: -21.75 SS G_CDS: -2.94 Total: -24.69 kcal Atomic # 7 Polarization: -34.49 SS G_CDS: 0.28 Total: -34.20 kcal Atomic # 8 Polarization: -4.94 SS G_CDS: -0.40 Total: -5.35 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.03 Total: 14.25 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -28.84 -8.77 -37.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037071498.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.237 kcal (2) G-P(sol) polarization free energy of solvation -28.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds