Wall clock time and date at job start Mon Mar 30 2020 06:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30907 * 1 3 3 Si 1.86798 * 119.99913 * 2 1 4 4 H 1.48495 * 109.47047 * 239.99611 * 3 2 1 5 5 H 1.48495 * 109.47239 * 0.02562 * 3 2 1 6 6 H 1.48511 * 109.47048 * 119.99729 * 3 2 1 7 7 C 1.39866 * 119.99933 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99862 * 197.96899 * 7 2 1 9 9 C 1.41135 * 119.99937 * 17.96548 * 7 2 1 10 10 C 1.40882 * 120.15858 * 24.60998 * 9 7 2 11 11 C 1.36337 * 119.84061 * 179.97438 * 10 9 7 12 12 C 1.39575 * 120.15731 * 0.02999 * 11 10 9 13 13 N 1.38851 * 119.83808 * 179.69972 * 12 11 10 14 14 C 1.46506 * 119.99829 * 180.02562 * 13 12 11 15 15 C 1.52991 * 109.47260 * 180.02562 * 14 13 12 16 16 H 1.08999 * 110.75458 * 54.29610 * 15 14 13 17 17 C 1.55305 * 110.84962 * 177.77063 * 15 14 13 18 18 C 1.55205 * 100.82712 * 152.17733 * 17 15 14 19 19 O 1.43644 * 105.26311 * 323.81448 * 18 17 15 20 20 C 1.43246 * 109.96705 * 24.28525 * 19 18 17 21 21 C 1.39569 * 120.31610 * 359.97289 * 12 11 10 22 22 C 1.36339 * 120.16343 * 0.02562 * 21 12 11 23 23 H 0.96993 * 119.99841 * 0.02562 * 1 2 3 24 24 H 1.08005 * 120.07856 * 0.02562 * 10 9 7 25 25 H 1.07997 * 119.92100 * 180.02562 * 11 10 9 26 26 H 0.96995 * 120.00113 * 359.97438 * 13 12 11 27 27 H 1.09001 * 109.46550 * 299.99945 * 14 13 12 28 28 H 1.09005 * 109.47210 * 59.99321 * 14 13 12 29 29 H 1.08999 * 111.12198 * 270.23984 * 17 15 14 30 30 H 1.08997 * 111.12709 * 34.40128 * 17 15 14 31 31 H 1.09000 * 110.37101 * 204.80250 * 18 17 15 32 32 H 1.09001 * 110.21626 * 82.75222 * 18 17 15 33 33 H 1.09002 * 109.82771 * 238.76727 * 20 19 18 34 34 H 1.09003 * 109.89961 * 117.84807 * 20 19 18 35 35 H 1.08003 * 119.91777 * 179.97438 * 21 12 11 36 36 H 1.07995 * 120.08729 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 3.0968 1.6963 -1.2124 5 1 1.2781 2.7464 0.0006 6 1 3.0968 1.6964 1.2126 7 6 2.0084 -1.2113 0.0005 8 1 3.0489 -1.2339 0.2891 9 6 1.3543 -2.4039 -0.3759 10 6 0.2261 -2.3568 -1.2183 11 6 -0.4005 -3.5129 -1.5784 12 6 0.0729 -4.7410 -1.1139 13 7 -0.5740 -5.9139 -1.4797 14 6 -0.0804 -7.2049 -0.9937 15 6 -0.9648 -8.3274 -1.5400 16 1 -1.0323 -8.2719 -2.6265 17 6 -0.4362 -9.7165 -1.0894 18 6 -1.7509 -10.5413 -1.0851 19 8 -2.7664 -9.6320 -0.6322 20 6 -2.3686 -8.2820 -0.8993 21 6 1.1900 -4.7953 -0.2790 22 6 1.8266 -3.6472 0.0891 23 1 -0.4849 0.8400 -0.0004 24 1 -0.1411 -1.4072 -1.5787 25 1 -1.2652 -3.4783 -2.2244 26 1 -1.3532 -5.8785 -2.0563 27 1 0.9448 -7.3528 -1.3329 28 1 -0.1080 -7.2176 0.0959 29 1 0.2797 -10.1162 -1.8075 30 1 -0.0021 -9.6666 -0.0908 31 1 -1.6669 -11.3857 -0.4010 32 1 -1.9788 -10.8920 -2.0917 33 1 -2.3322 -7.7162 0.0317 34 1 -3.0743 -7.8165 -1.5873 35 1 1.5506 -5.7491 0.0770 36 1 2.6911 -3.6907 0.7349 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037071498.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:29 Heat of formation + Delta-G solvation = -48.553880 kcal Electronic energy + Delta-G solvation = -17138.882543 eV Core-core repulsion = 14393.378558 eV Total energy + Delta-G solvation = -2745.503985 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.56253 -39.60608 -36.89704 -35.06719 -33.26202 -31.45378 -30.79583 -29.74557 -27.01026 -25.56402 -23.34171 -22.91705 -21.97102 -21.35196 -19.11059 -17.80120 -17.78418 -17.15719 -16.61045 -16.13930 -15.75254 -15.61797 -15.05421 -14.58149 -14.44807 -14.12325 -13.90954 -13.68187 -13.46937 -13.13264 -12.77508 -12.66679 -12.54296 -12.26880 -12.04942 -11.96889 -11.73462 -11.53762 -11.18621 -11.05048 -10.50741 -10.29969 -9.40153 -8.55373 -8.17106 -6.01076 1.10702 1.19389 1.40483 1.51378 1.60382 2.27636 2.80034 2.85410 2.95534 3.51688 3.78670 3.84927 3.91028 4.26620 4.32196 4.36798 4.45737 4.49512 4.65339 4.75763 4.80345 4.91069 4.94996 5.00088 5.03507 5.18338 5.25702 5.31562 5.41864 5.73988 5.75802 5.92390 6.02542 6.18467 6.41157 6.66897 6.87139 7.08444 7.12852 7.29475 8.48089 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.066382 B = 0.003857 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.699530 B = 7257.355980 C = 7482.537343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.032 3.968 3 Si 0.977 3.023 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.262 1.262 7 C -0.508 4.508 8 H 0.068 0.932 9 C 0.036 3.964 10 C -0.142 4.142 11 C -0.174 4.174 12 C 0.110 3.890 13 N -0.753 5.753 14 C 0.149 3.851 15 C -0.123 4.123 16 H 0.100 0.900 17 C -0.142 4.142 18 C 0.045 3.955 19 O -0.411 6.411 20 C 0.055 3.945 21 C -0.166 4.166 22 C -0.199 4.199 23 H 0.282 0.718 24 H 0.100 0.900 25 H 0.108 0.892 26 H 0.395 0.605 27 H 0.056 0.944 28 H 0.044 0.956 29 H 0.107 0.893 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.071 0.929 35 H 0.115 0.885 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.001 -15.319 -3.869 15.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.180 4.180 3 Si 0.799 3.201 4 H -0.187 1.187 5 H -0.195 1.195 6 H -0.187 1.187 7 C -0.539 4.539 8 H 0.086 0.914 9 C 0.033 3.967 10 C -0.163 4.163 11 C -0.196 4.196 12 C 0.011 3.989 13 N -0.388 5.388 14 C 0.024 3.976 15 C -0.142 4.142 16 H 0.118 0.882 17 C -0.180 4.180 18 C -0.031 4.031 19 O -0.331 6.331 20 C -0.022 4.022 21 C -0.188 4.188 22 C -0.219 4.219 23 H 0.093 0.907 24 H 0.118 0.882 25 H 0.126 0.874 26 H 0.229 0.771 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.125 0.875 30 H 0.100 0.900 31 H 0.116 0.884 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.133 0.867 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.281 -15.367 -3.656 15.960 hybrid contribution 0.152 1.164 -0.099 1.178 sum -2.129 -14.203 -3.755 14.845 Atomic orbital electron populations 1.69911 1.08757 1.29890 1.38372 1.26617 0.95459 1.04108 0.91800 0.85339 0.78759 0.76252 0.79798 1.18728 1.19456 1.18668 1.19586 0.98075 0.92823 1.43454 0.91400 1.17818 0.93584 0.93010 0.92264 1.20865 0.98850 0.96730 0.99811 1.20249 1.02118 0.91793 1.05441 1.17436 0.95117 0.86272 1.00067 1.43929 1.34521 1.02252 1.58131 1.21089 0.97128 0.81798 0.97586 1.22863 0.94293 0.95267 1.01739 0.88224 1.23313 0.98329 0.92768 1.03607 1.23616 0.85827 0.92948 1.00668 1.88374 1.44804 1.16351 1.83581 1.23203 0.95361 0.83680 0.99910 1.20118 0.98058 0.97481 1.03185 1.20764 1.03174 0.92957 1.05041 0.90723 0.88216 0.87431 0.77091 0.92592 0.93752 0.87502 0.90007 0.88430 0.90978 0.92233 0.91043 0.86713 0.88675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.18 10.96 21.82 0.24 -45.94 16 2 C 0.03 1.71 5.13 85.22 0.44 2.14 16 3 Si 0.98 40.25 29.60 68.60 2.03 42.28 16 4 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 5 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 6 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 7 C -0.51 -28.78 9.03 23.38 0.21 -28.57 16 8 H 0.07 3.72 7.91 -2.91 -0.02 3.70 16 9 C 0.04 2.02 5.57 -21.27 -0.12 1.90 16 10 C -0.14 -7.71 8.64 22.47 0.19 -7.51 16 11 C -0.17 -8.09 9.82 22.15 0.22 -7.87 16 12 C 0.11 4.64 6.67 38.67 0.26 4.90 16 13 N -0.75 -23.74 5.58 -338.98 -1.89 -25.63 16 14 C 0.15 3.74 4.22 86.38 0.36 4.10 16 15 C -0.12 -2.33 3.02 -9.54 -0.03 -2.35 16 16 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 17 C -0.14 -2.10 6.64 32.14 0.21 -1.88 16 18 C 0.05 0.71 7.78 72.74 0.57 1.28 16 19 O -0.41 -9.64 11.36 -148.98 -1.69 -11.33 16 20 C 0.05 1.21 7.23 72.45 0.52 1.74 16 21 C -0.17 -7.31 9.23 22.15 0.20 -7.11 16 22 C -0.20 -10.06 9.74 22.48 0.22 -9.84 16 23 H 0.28 14.14 8.30 -92.71 -0.77 13.37 16 24 H 0.10 5.67 6.16 -2.91 -0.02 5.66 16 25 H 0.11 4.43 8.06 -2.91 -0.02 4.41 16 26 H 0.40 11.02 8.41 -92.71 -0.78 10.24 16 27 H 0.06 1.40 7.93 -2.39 -0.02 1.38 16 28 H 0.04 1.21 7.79 -2.38 -0.02 1.19 16 29 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.08 1.24 8.04 -2.39 -0.02 1.22 16 31 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.06 1.49 7.72 -2.39 -0.02 1.47 16 34 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.11 4.33 6.68 -2.91 -0.02 4.31 16 36 H 0.10 4.56 8.06 -2.91 -0.02 4.54 16 Total: -1.00 -63.45 297.30 2.24 -61.21 By element: Atomic # 1 Polarization: 28.21 SS G_CDS: 0.29 Total: 28.50 kcal Atomic # 6 Polarization: -52.34 SS G_CDS: 3.26 Total: -49.08 kcal Atomic # 7 Polarization: -69.93 SS G_CDS: -1.65 Total: -71.58 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: -1.69 Total: -11.33 kcal Atomic # 14 Polarization: 40.25 SS G_CDS: 2.03 Total: 42.28 kcal Total: -63.45 2.24 -61.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037071498.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.656 kcal (2) G-P(sol) polarization free energy of solvation -63.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds