Wall clock time and date at job start Mon Mar 30 2020 05:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35999 * 116.99816 * 2 1 4 4 C 1.38572 * 120.07107 * 0.02562 * 3 2 1 5 5 C 1.38235 * 119.99401 * 179.97438 * 4 3 2 6 6 C 1.38248 * 120.15175 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.92698 * 179.97438 * 6 5 4 8 8 C 1.50707 * 109.47108 * 60.00405 * 7 6 5 9 9 H 1.07995 * 119.99452 * 304.62727 * 8 7 6 10 10 C 1.37879 * 119.99880 * 124.62444 * 8 7 6 11 11 N 1.31518 * 119.99388 * 184.52032 * 10 8 7 12 12 Si 1.86798 * 120.00087 * 4.52024 * 10 8 7 13 13 H 1.48500 * 109.47191 * 84.74688 * 12 10 8 14 14 H 1.48510 * 109.46913 * 204.74224 * 12 10 8 15 15 H 1.48503 * 109.47266 * 324.74169 * 12 10 8 16 16 C 1.52994 * 109.47562 * 300.00263 * 7 6 5 17 17 C 1.47196 * 109.47335 * 185.63151 * 16 7 6 18 18 N 8.86460 * 113.24755 * 350.28527 * 2 1 3 19 19 C 1.38241 * 120.14708 * 0.23485 * 6 5 4 20 20 C 1.38572 * 119.99462 * 359.49272 * 19 6 5 21 21 O 1.35992 * 120.07107 * 180.25363 * 20 19 6 22 22 H 1.09006 * 109.46747 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47318 * 299.99873 * 1 2 3 24 24 H 1.08998 * 109.47307 * 60.00405 * 1 2 3 25 25 H 1.07996 * 120.00055 * 359.97438 * 4 3 2 26 26 H 1.08001 * 119.92271 * 179.97438 * 5 4 3 27 27 H 1.09001 * 109.47276 * 179.97438 * 7 6 5 28 28 H 0.97000 * 119.99307 * 180.02562 * 11 10 8 29 29 H 1.08997 * 109.47259 * 65.62476 * 16 7 6 30 30 H 1.09007 * 109.47004 * 305.63085 * 16 7 6 31 31 H 1.08002 * 120.00382 * 179.74204 * 19 6 5 32 32 H 0.96708 * 114.00328 * 270.27522 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2931 2.3748 0.0005 5 6 1.9223 3.6057 0.0011 6 6 3.3028 3.6799 0.0005 7 6 3.9834 5.0244 0.0005 8 6 3.5770 5.7932 1.2314 9 1 2.5313 5.9627 1.4414 10 6 4.5403 6.2801 2.0894 11 7 4.1851 6.8731 3.2083 12 14 6.3497 6.0975 1.6626 13 1 6.7655 7.2169 0.7799 14 1 7.1572 6.1235 2.9087 15 1 6.5648 4.8069 0.9602 16 6 3.5698 5.8056 -1.2483 17 6 4.3360 7.0604 -1.3183 18 7 4.9279 8.0281 -1.3744 19 6 4.0602 2.5235 -0.0054 20 6 3.4358 1.2864 -0.0003 21 8 4.1795 0.1478 -0.0009 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 0.2145 2.3196 0.0005 26 1 1.3340 4.5115 0.0011 27 1 5.0644 4.8845 0.0005 28 1 4.8627 7.2159 3.8117 29 1 2.5048 6.0323 -1.1989 30 1 3.7728 5.2059 -2.1357 31 1 5.1385 2.5842 -0.0100 32 1 4.3945 -0.1811 -0.8846 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038841892.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:20 Heat of formation + Delta-G solvation = -34.845098 kcal Electronic energy + Delta-G solvation = -17356.805517 eV Core-core repulsion = 14476.062895 eV Total energy + Delta-G solvation = -2880.742622 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.05485 -37.76854 -36.92313 -35.72980 -33.65042 -31.75911 -29.80883 -28.86623 -27.00548 -25.95634 -22.77067 -22.15792 -20.16161 -18.10761 -17.40401 -17.10221 -16.76941 -15.76224 -15.58480 -14.78283 -14.28351 -14.16727 -13.86334 -13.69332 -13.53625 -12.99386 -12.47626 -12.17760 -12.06843 -11.80070 -11.69626 -11.30503 -11.09267 -10.95227 -10.85538 -10.62292 -10.23771 -9.91874 -9.77835 -9.25889 -8.67565 -8.38941 -7.51995 -6.23642 -4.25766 1.67338 1.85651 3.22286 3.26840 3.34703 3.46583 3.59525 3.63286 4.11949 4.29682 4.52298 4.89468 5.05819 5.13544 5.19885 5.24535 5.46940 5.54157 5.77668 5.87565 5.92977 6.00337 6.08958 6.27247 6.41092 6.65804 6.68994 6.84910 7.11941 7.28799 7.49809 7.50834 8.05577 8.29937 8.42463 8.80141 9.37323 10.88430 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.025620 B = 0.006812 C = 0.006509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.617651 B = 4109.146195 C = 4300.576627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.316 6.316 3 C 0.075 3.925 4 C -0.193 4.193 5 C -0.076 4.076 6 C -0.048 4.048 7 C 0.045 3.955 8 C -0.514 4.514 9 H 0.083 0.917 10 C 0.083 3.917 11 N -0.886 5.886 12 Si 0.857 3.143 13 H -0.265 1.265 14 H -0.286 1.286 15 H -0.261 1.261 16 C -0.022 4.022 17 C 0.234 3.766 18 N -0.468 5.468 19 C -0.116 4.116 20 C 0.070 3.930 21 O -0.490 6.490 22 H 0.093 0.907 23 H 0.053 0.947 24 H 0.051 0.949 25 H 0.124 0.876 26 H 0.130 0.870 27 H 0.057 0.943 28 H 0.267 0.733 29 H 0.100 0.900 30 H 0.084 0.916 31 H 0.128 0.872 32 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.945 -12.297 -9.344 16.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.230 6.230 3 C 0.030 3.970 4 C -0.212 4.212 5 C -0.094 4.094 6 C -0.049 4.049 7 C 0.024 3.976 8 C -0.551 4.551 9 H 0.101 0.899 10 C -0.121 4.121 11 N -0.522 5.522 12 Si 0.684 3.316 13 H -0.190 1.190 14 H -0.212 1.212 15 H -0.186 1.186 16 C -0.063 4.063 17 C -0.083 4.083 18 N -0.146 5.146 19 C -0.135 4.135 20 C 0.025 3.975 21 O -0.298 6.298 22 H 0.111 0.889 23 H 0.072 0.928 24 H 0.070 0.930 25 H 0.142 0.858 26 H 0.147 0.853 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.118 0.882 30 H 0.102 0.898 31 H 0.146 0.854 32 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -4.946 -10.864 -8.622 14.725 hybrid contribution 0.483 -0.349 -0.289 0.663 sum -4.463 -11.214 -8.911 15.003 Atomic orbital electron populations 1.22978 0.79308 1.03228 1.01193 1.86085 1.20547 1.26897 1.89467 1.19298 0.91576 0.84519 1.01570 1.21095 0.99454 0.92122 1.08529 1.20845 0.94443 0.96590 0.97512 1.20109 0.93358 0.95342 0.96135 1.18371 0.97012 0.88628 0.93552 1.20848 0.95680 1.33427 1.05157 0.89937 1.25026 0.98571 0.94160 0.94348 1.69863 1.34200 1.37961 1.10126 0.87152 0.86195 0.79605 0.78650 1.19023 1.21155 1.18578 1.19681 0.98673 0.87112 1.00805 1.29103 0.93224 0.94509 0.91426 1.81047 1.10703 1.12319 1.10522 1.21192 1.00336 0.90454 1.01521 1.17697 0.85999 0.86211 1.07556 1.84901 1.72109 1.40190 1.32626 0.88850 0.92825 0.92998 0.85785 0.85261 0.92474 0.92297 0.88164 0.89791 0.85363 0.76847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.27 16 2 O -0.32 -4.61 10.28 -34.24 -0.35 -4.96 16 3 C 0.08 1.20 6.70 -39.12 -0.26 0.94 16 4 C -0.19 -2.87 9.04 -39.46 -0.36 -3.23 16 5 C -0.08 -1.24 8.82 -39.58 -0.35 -1.59 16 6 C -0.05 -0.88 4.77 -104.62 -0.50 -1.38 16 7 C 0.04 0.90 1.87 -92.92 -0.17 0.72 16 8 C -0.51 -12.87 7.95 -34.44 -0.27 -13.14 16 9 H 0.08 2.21 7.89 -52.49 -0.41 1.79 16 10 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 11 N -0.89 -26.15 13.96 55.43 0.77 -25.38 16 12 Si 0.86 21.01 26.94 -169.99 -4.58 16.43 16 13 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 14 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 15 H -0.26 -5.90 6.21 56.52 0.35 -5.55 16 16 C -0.02 -0.37 4.90 -29.52 -0.14 -0.51 16 17 C 0.23 4.71 14.42 -20.77 -0.30 4.41 16 18 N -0.47 -10.59 18.54 42.14 0.78 -9.80 16 19 C -0.12 -2.03 9.60 -39.46 -0.38 -2.41 16 20 C 0.07 1.17 6.72 -39.12 -0.26 0.91 16 21 O -0.49 -7.48 13.29 -34.22 -0.45 -7.93 16 22 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 23 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 24 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 25 H 0.12 1.50 6.30 -52.49 -0.33 1.17 16 26 H 0.13 1.98 7.52 -52.49 -0.39 1.59 16 27 H 0.06 1.21 4.20 -51.93 -0.22 0.99 16 28 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 29 H 0.10 1.49 7.58 -51.93 -0.39 1.09 16 30 H 0.08 1.09 8.14 -51.92 -0.42 0.67 16 31 H 0.13 2.16 7.94 -52.49 -0.42 1.74 16 32 H 0.38 3.79 9.07 45.56 0.41 4.20 16 LS Contribution 283.92 15.07 4.28 4.28 Total: -1.00 -32.60 283.92 -4.24 -36.84 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -2.58 Total: 2.35 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: -2.11 Total: -11.82 kcal Atomic # 7 Polarization: -36.74 SS G_CDS: 1.55 Total: -35.18 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: -0.81 Total: -12.89 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.58 Total: 16.43 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -32.60 -4.24 -36.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038841892.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.993 kcal (2) G-P(sol) polarization free energy of solvation -32.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds