Wall clock time and date at job start Mon Mar 30 2020 05:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35999 * 116.99816 * 2 1 4 4 C 1.38572 * 120.07107 * 0.02562 * 3 2 1 5 5 C 1.38235 * 119.99401 * 179.97438 * 4 3 2 6 6 C 1.38248 * 120.15175 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.92698 * 179.97438 * 6 5 4 8 8 C 1.50707 * 109.47108 * 60.00405 * 7 6 5 9 9 H 1.07995 * 119.99452 * 304.62727 * 8 7 6 10 10 C 1.37879 * 119.99880 * 124.62444 * 8 7 6 11 11 N 1.31518 * 119.99388 * 184.52032 * 10 8 7 12 12 Si 1.86798 * 120.00087 * 4.52024 * 10 8 7 13 13 H 1.48500 * 109.47191 * 84.74688 * 12 10 8 14 14 H 1.48510 * 109.46913 * 204.74224 * 12 10 8 15 15 H 1.48503 * 109.47266 * 324.74169 * 12 10 8 16 16 C 1.52994 * 109.47562 * 300.00263 * 7 6 5 17 17 C 1.47196 * 109.47335 * 185.63151 * 16 7 6 18 18 N 8.86460 * 113.24755 * 350.28527 * 2 1 3 19 19 C 1.38241 * 120.14708 * 0.23485 * 6 5 4 20 20 C 1.38572 * 119.99462 * 359.49272 * 19 6 5 21 21 O 1.35992 * 120.07107 * 180.25363 * 20 19 6 22 22 H 1.09006 * 109.46747 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47318 * 299.99873 * 1 2 3 24 24 H 1.08998 * 109.47307 * 60.00405 * 1 2 3 25 25 H 1.07996 * 120.00055 * 359.97438 * 4 3 2 26 26 H 1.08001 * 119.92271 * 179.97438 * 5 4 3 27 27 H 1.09001 * 109.47276 * 179.97438 * 7 6 5 28 28 H 0.97000 * 119.99307 * 180.02562 * 11 10 8 29 29 H 1.08997 * 109.47259 * 65.62476 * 16 7 6 30 30 H 1.09007 * 109.47004 * 305.63085 * 16 7 6 31 31 H 1.08002 * 120.00382 * 179.74204 * 19 6 5 32 32 H 0.96708 * 114.00328 * 270.27522 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2931 2.3748 0.0005 5 6 1.9223 3.6057 0.0011 6 6 3.3028 3.6799 0.0005 7 6 3.9834 5.0244 0.0005 8 6 3.5770 5.7932 1.2314 9 1 2.5313 5.9627 1.4414 10 6 4.5403 6.2801 2.0894 11 7 4.1851 6.8731 3.2083 12 14 6.3497 6.0975 1.6626 13 1 6.7655 7.2169 0.7799 14 1 7.1572 6.1235 2.9087 15 1 6.5648 4.8069 0.9602 16 6 3.5698 5.8056 -1.2483 17 6 4.3360 7.0604 -1.3183 18 7 4.9279 8.0281 -1.3744 19 6 4.0602 2.5235 -0.0054 20 6 3.4358 1.2864 -0.0003 21 8 4.1795 0.1478 -0.0009 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 0.2145 2.3196 0.0005 26 1 1.3340 4.5115 0.0011 27 1 5.0644 4.8845 0.0005 28 1 4.8627 7.2159 3.8117 29 1 2.5048 6.0323 -1.1989 30 1 3.7728 5.2059 -2.1357 31 1 5.1385 2.5842 -0.0100 32 1 4.3945 -0.1811 -0.8846 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038841892.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:20 Heat of formation + Delta-G solvation = -57.582608 kcal Electronic energy + Delta-G solvation = -17357.791490 eV Core-core repulsion = 14476.062895 eV Total energy + Delta-G solvation = -2881.728594 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.22890 -38.98874 -38.21584 -37.22042 -35.31384 -33.57222 -31.04724 -30.02333 -28.15022 -27.57273 -24.23967 -23.38703 -21.56795 -19.30481 -19.18083 -18.31714 -18.28704 -17.04025 -16.65851 -16.23237 -15.82947 -15.39706 -15.33708 -14.89437 -14.82490 -14.73609 -14.18318 -13.62060 -13.54151 -13.12955 -12.89036 -12.85144 -12.61752 -12.56786 -12.11460 -11.95747 -11.79798 -11.50494 -11.26177 -11.00010 -10.69283 -9.61901 -8.76705 -8.31720 -6.32162 0.45207 0.59660 1.26220 1.31269 1.35296 2.01263 2.06738 2.28915 2.47357 2.86000 3.10899 3.38231 3.47366 4.03183 4.21573 4.39779 4.49815 4.50022 4.56457 4.63496 4.79018 4.81843 4.86776 4.89721 5.10196 5.26607 5.42704 5.54019 5.60254 5.88499 5.96020 6.30207 6.46766 6.77524 6.86779 7.02772 7.32978 8.84066 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.025620 B = 0.006812 C = 0.006509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.617651 B = 4109.146195 C = 4300.576627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.331 6.331 3 C 0.076 3.924 4 C -0.187 4.187 5 C -0.079 4.079 6 C -0.066 4.066 7 C 0.046 3.954 8 C -0.492 4.492 9 H 0.059 0.941 10 C 0.026 3.974 11 N -0.941 5.941 12 Si 0.897 3.103 13 H -0.279 1.279 14 H -0.295 1.295 15 H -0.229 1.229 16 C -0.017 4.017 17 C 0.248 3.752 18 N -0.518 5.518 19 C -0.125 4.125 20 C 0.062 3.938 21 O -0.502 6.502 22 H 0.117 0.883 23 H 0.057 0.943 24 H 0.069 0.931 25 H 0.154 0.846 26 H 0.138 0.862 27 H 0.048 0.952 28 H 0.261 0.739 29 H 0.124 0.876 30 H 0.134 0.866 31 H 0.129 0.871 32 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.164 -14.573 -11.216 19.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.245 6.245 3 C 0.030 3.970 4 C -0.205 4.205 5 C -0.097 4.097 6 C -0.067 4.067 7 C 0.026 3.974 8 C -0.530 4.530 9 H 0.078 0.922 10 C -0.172 4.172 11 N -0.581 5.581 12 Si 0.723 3.277 13 H -0.205 1.205 14 H -0.222 1.222 15 H -0.153 1.153 16 C -0.057 4.057 17 C -0.068 4.068 18 N -0.197 5.197 19 C -0.143 4.143 20 C 0.017 3.983 21 O -0.313 6.313 22 H 0.135 0.865 23 H 0.075 0.925 24 H 0.088 0.912 25 H 0.172 0.828 26 H 0.155 0.845 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.142 0.858 30 H 0.152 0.848 31 H 0.146 0.854 32 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -6.168 -13.186 -10.543 17.974 hybrid contribution 0.699 0.181 0.220 0.755 sum -5.469 -13.006 -10.323 17.482 Atomic orbital electron populations 1.23327 0.76859 1.05313 1.02201 1.86075 1.23078 1.26258 1.89131 1.19450 0.91600 0.85411 1.00529 1.21349 1.00951 0.91102 1.07120 1.20973 0.93845 0.97661 0.97247 1.19825 0.94096 0.94095 0.98665 1.18269 0.96760 0.89678 0.92722 1.21212 0.94272 1.31610 1.05919 0.92245 1.25670 1.01800 0.95048 0.94654 1.69994 1.34833 1.41376 1.11932 0.86491 0.82798 0.80455 0.77928 1.20472 1.22186 1.15251 1.19845 0.99390 0.85543 1.00955 1.29817 0.92340 0.94629 0.90018 1.81064 1.12408 1.14075 1.12169 1.21221 1.00450 0.90751 1.01924 1.17776 0.86700 0.86277 1.07560 1.84834 1.72015 1.39692 1.34767 0.86461 0.92467 0.91205 0.82835 0.84459 0.93417 0.92952 0.85803 0.84808 0.85353 0.74284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.39 16 2 O -0.33 -8.57 10.28 -79.67 -0.82 -9.39 16 3 C 0.08 2.17 6.70 22.57 0.15 2.32 16 4 C -0.19 -4.90 9.04 22.35 0.20 -4.69 16 5 C -0.08 -2.36 8.82 22.27 0.20 -2.16 16 6 C -0.07 -2.22 4.77 -19.86 -0.09 -2.32 16 7 C 0.05 1.75 1.87 -12.29 -0.02 1.73 16 8 C -0.49 -24.49 7.95 25.60 0.20 -24.29 16 9 H 0.06 3.19 7.89 -2.91 -0.02 3.16 16 10 C 0.03 1.47 5.47 84.65 0.46 1.93 16 11 N -0.94 -57.45 13.96 21.45 0.30 -57.15 16 12 Si 0.90 43.58 26.94 68.60 1.85 45.43 16 13 H -0.28 -14.07 7.11 99.48 0.71 -13.37 16 14 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 15 H -0.23 -9.83 6.21 99.48 0.62 -9.21 16 16 C -0.02 -0.52 4.90 28.79 0.14 -0.38 16 17 C 0.25 9.56 14.42 89.44 1.29 10.85 16 18 N -0.52 -23.18 18.54 20.00 0.37 -22.81 16 19 C -0.12 -4.07 9.60 22.35 0.21 -3.86 16 20 C 0.06 1.91 6.72 22.57 0.15 2.06 16 21 O -0.50 -14.12 13.29 -79.59 -1.06 -15.18 16 22 H 0.12 1.31 8.14 -2.38 -0.02 1.29 16 23 H 0.06 0.89 7.66 -2.39 -0.02 0.87 16 24 H 0.07 0.89 7.66 -2.39 -0.02 0.87 16 25 H 0.15 3.03 6.30 -2.91 -0.02 3.02 16 26 H 0.14 3.80 7.52 -2.91 -0.02 3.78 16 27 H 0.05 1.91 4.20 -2.39 -0.01 1.90 16 28 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 29 H 0.12 3.22 7.58 -2.39 -0.02 3.20 16 30 H 0.13 2.83 8.14 -2.38 -0.02 2.81 16 31 H 0.13 4.07 7.94 -2.91 -0.02 4.05 16 32 H 0.40 6.99 9.07 -74.05 -0.67 6.31 16 Total: -1.00 -72.19 283.92 5.05 -67.15 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: 0.40 Total: 9.38 kcal Atomic # 6 Polarization: -21.43 SS G_CDS: 4.01 Total: -17.42 kcal Atomic # 7 Polarization: -80.64 SS G_CDS: 0.67 Total: -79.97 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -1.88 Total: -24.57 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 1.85 Total: 45.43 kcal Total: -72.19 5.05 -67.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038841892.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.563 kcal (2) G-P(sol) polarization free energy of solvation -72.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds