Wall clock time and date at job start Mon Mar 30 2020 05:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35979 * 116.99857 * 2 1 4 4 C 1.38715 * 120.00285 * 0.02562 * 3 2 1 5 5 C 1.38118 * 120.00080 * 180.02562 * 4 3 2 6 6 C 1.38717 * 119.99870 * 0.25914 * 5 4 3 7 7 O 1.35980 * 120.00075 * 179.69918 * 6 5 4 8 8 C 1.42903 * 117.00000 * 359.97438 * 7 6 5 9 9 C 1.38680 * 120.00116 * 359.42113 * 6 5 4 10 10 C 1.50700 * 120.00427 * 180.30240 * 9 6 5 11 11 H 1.09000 * 109.46346 * 0.29214 * 10 9 6 12 12 C 1.47197 * 109.46908 * 240.30153 * 10 9 6 13 13 N 5.67452 * 153.25545 * 303.55414 * 2 1 3 14 14 C 1.50690 * 109.47267 * 120.29515 * 10 9 6 15 15 H 1.08002 * 120.00337 * 0.02562 * 14 10 9 16 16 C 1.37878 * 119.99922 * 180.02562 * 14 10 9 17 17 N 1.31513 * 120.00006 * 359.97438 * 16 14 10 18 18 Si 1.86800 * 120.00318 * 180.02562 * 16 14 10 19 19 H 1.48510 * 109.46852 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.47283 * 119.99892 * 18 16 14 21 21 H 1.48503 * 109.47385 * 240.00075 * 18 16 14 22 22 C 1.38162 * 119.99600 * 0.59787 * 9 6 5 23 23 H 1.08997 * 109.47244 * 59.99416 * 1 2 3 24 24 H 1.09001 * 109.47143 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46569 * 299.99701 * 1 2 3 26 26 H 1.07999 * 119.99895 * 0.02562 * 4 3 2 27 27 H 1.08002 * 119.99729 * 179.97438 * 5 4 3 28 28 H 1.08994 * 109.47633 * 179.97438 * 8 7 6 29 29 H 1.08999 * 109.46989 * 300.00188 * 8 7 6 30 30 H 1.08998 * 109.46866 * 59.99983 * 8 7 6 31 31 H 0.97001 * 120.00109 * 179.97438 * 17 16 14 32 32 H 1.08002 * 119.99555 * 179.72891 * 22 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2909 2.3750 0.0005 5 6 1.9179 3.6056 0.0000 6 6 3.3032 3.6782 -0.0065 7 8 3.9206 4.8897 -0.0132 8 6 3.0806 6.0459 -0.0137 9 6 4.0585 2.5151 -0.0003 10 6 5.5635 2.5939 -0.0005 11 1 5.8724 3.6392 -0.0007 12 6 6.0895 1.9267 -1.2025 13 7 6.4965 1.4114 -2.1281 14 6 6.1024 1.9109 1.2298 15 1 5.4232 1.4639 1.9407 16 6 7.4627 1.8564 1.4481 17 7 8.2899 2.4002 0.5822 18 14 8.1309 1.0091 2.9729 19 1 7.0020 0.4822 3.7812 20 1 9.0164 -0.1123 2.5681 21 1 8.9055 1.9843 3.7818 22 6 3.4312 1.2841 -0.0002 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3632 0.5138 0.8900 26 1 0.2124 2.3185 0.0014 27 1 1.3297 4.5114 0.0000 28 1 3.6984 6.9438 -0.0189 29 1 2.4477 6.0347 -0.9010 30 1 2.4551 6.0408 0.8789 31 1 9.2469 2.3623 0.7360 32 1 4.0195 0.3784 0.0002 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041228805.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:56 Heat of formation + Delta-G solvation = -26.730809 kcal Electronic energy + Delta-G solvation = -17461.980603 eV Core-core repulsion = 14581.589843 eV Total energy + Delta-G solvation = -2880.390760 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.10622 -38.59797 -36.44261 -35.07308 -33.10654 -31.52101 -29.59825 -27.92317 -26.82168 -26.54912 -23.89066 -21.76428 -20.96492 -17.88706 -17.28467 -17.10101 -16.51325 -15.52172 -15.20522 -15.06242 -14.74008 -14.41557 -13.90968 -13.39202 -13.00629 -12.52678 -12.42397 -12.27299 -12.00236 -11.53600 -11.39183 -11.33512 -11.21071 -11.01779 -10.81581 -10.56941 -10.39366 -10.08063 -9.68833 -9.35534 -8.62866 -8.33021 -7.27517 -6.20845 -4.31471 1.72660 1.93034 3.25904 3.34259 3.38391 3.55977 3.77351 4.15655 4.30150 4.42144 4.53235 5.01168 5.09256 5.16437 5.22989 5.23852 5.33632 5.39154 5.50337 5.58312 5.69167 5.85202 6.03566 6.15614 6.35011 6.47855 6.70680 6.76050 7.08826 7.45081 7.66762 7.74902 7.92566 7.95176 8.70778 9.28262 9.37513 10.86853 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.018145 B = 0.008056 C = 0.006805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.794070 B = 3474.695557 C = 4113.399381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.319 6.319 3 C 0.085 3.915 4 C -0.185 4.185 5 C -0.175 4.175 6 C 0.095 3.905 7 O -0.304 6.304 8 C 0.029 3.971 9 C -0.031 4.031 10 C 0.168 3.832 11 H 0.089 0.911 12 C 0.268 3.732 13 N -0.517 5.517 14 C -0.518 4.518 15 H 0.076 0.924 16 C 0.067 3.933 17 N -0.875 5.875 18 Si 0.903 3.097 19 H -0.268 1.268 20 H -0.283 1.283 21 H -0.280 1.280 22 C -0.096 4.096 23 H 0.050 0.950 24 H 0.093 0.907 25 H 0.051 0.949 26 H 0.122 0.878 27 H 0.125 0.875 28 H 0.095 0.905 29 H 0.048 0.952 30 H 0.050 0.950 31 H 0.268 0.732 32 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.407 3.638 1.598 15.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.233 6.233 3 C 0.041 3.959 4 C -0.203 4.203 5 C -0.194 4.194 6 C 0.051 3.949 7 O -0.217 6.217 8 C -0.066 4.066 9 C -0.033 4.033 10 C 0.146 3.854 11 H 0.106 0.894 12 C -0.048 4.048 13 N -0.195 5.195 14 C -0.556 4.556 15 H 0.094 0.906 16 C -0.139 4.139 17 N -0.511 5.511 18 Si 0.730 3.270 19 H -0.192 1.192 20 H -0.209 1.209 21 H -0.206 1.206 22 C -0.115 4.115 23 H 0.068 0.932 24 H 0.112 0.888 25 H 0.069 0.931 26 H 0.140 0.860 27 H 0.143 0.857 28 H 0.114 0.886 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -14.298 2.763 0.158 14.564 hybrid contribution -0.198 0.069 1.200 1.218 sum -14.496 2.832 1.357 14.832 Atomic orbital electron populations 1.22936 0.79468 1.03237 1.00840 1.86086 1.20431 1.27175 1.89615 1.18883 0.92225 0.83824 1.00973 1.20797 0.99177 0.91792 1.08584 1.20839 0.93054 0.97940 1.07599 1.18718 0.90386 0.85439 1.00401 1.86197 1.34621 1.11841 1.89090 1.22963 0.95823 0.87325 1.00536 1.19231 0.96362 0.89133 0.98550 1.15490 0.84603 0.98214 0.87076 0.89358 1.29929 0.90841 0.91768 0.92271 1.80777 1.11507 1.12572 1.14650 1.20942 0.91942 1.38145 1.04613 0.90575 1.25097 0.96979 0.94838 0.96964 1.69936 1.03510 1.42569 1.35062 0.86333 0.79134 0.79240 0.82273 1.19198 1.20853 1.20628 1.20244 0.90611 0.98397 1.02212 0.93181 0.88829 0.93082 0.86001 0.85742 0.88638 0.93364 0.93172 0.92237 0.84315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.81 101.05 0.99 1.32 16 2 O -0.32 -5.08 10.50 -19.67 -0.21 -5.29 16 3 C 0.09 1.48 6.68 -39.24 -0.26 1.22 16 4 C -0.18 -2.76 9.03 -39.45 -0.36 -3.11 16 5 C -0.18 -2.67 9.03 -39.45 -0.36 -3.03 16 6 C 0.10 1.76 6.66 -39.24 -0.26 1.50 16 7 O -0.30 -5.40 9.26 -19.68 -0.18 -5.58 16 8 C 0.03 0.35 9.81 101.05 0.99 1.34 16 9 C -0.03 -0.65 4.72 -104.49 -0.49 -1.14 16 10 C 0.17 4.12 2.32 -95.72 -0.22 3.90 16 11 H 0.09 2.27 6.99 -51.93 -0.36 1.91 16 12 C 0.27 7.10 12.98 -20.80 -0.27 6.83 16 13 N -0.52 -14.25 18.53 42.11 0.78 -13.47 16 14 C -0.52 -13.50 8.22 -34.44 -0.28 -13.79 16 15 H 0.08 1.93 7.60 -52.49 -0.40 1.53 16 16 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 17 N -0.88 -24.86 12.37 55.43 0.69 -24.18 16 18 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 19 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 C -0.10 -1.93 8.74 -39.45 -0.34 -2.28 16 23 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 24 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.05 0.48 7.66 -51.93 -0.40 0.08 16 26 H 0.12 1.42 6.29 -52.49 -0.33 1.09 16 27 H 0.12 1.49 6.29 -52.49 -0.33 1.16 16 28 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 30 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 31 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 32 H 0.14 2.93 8.04 -52.49 -0.42 2.50 16 LS Contribution 285.27 15.07 4.30 4.30 Total: -1.00 -31.36 285.27 -4.02 -35.38 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: -3.42 Total: -1.35 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: -0.96 Total: -5.56 kcal Atomic # 7 Polarization: -39.11 SS G_CDS: 1.47 Total: -37.64 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: -0.39 Total: -10.87 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.36 -4.02 -35.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041228805.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.654 kcal (2) G-P(sol) polarization free energy of solvation -31.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds