Wall clock time and date at job start Mon Mar 30 2020 05:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35979 * 116.99857 * 2 1 4 4 C 1.38715 * 120.00285 * 0.02562 * 3 2 1 5 5 C 1.38118 * 120.00080 * 180.02562 * 4 3 2 6 6 C 1.38717 * 119.99870 * 0.25914 * 5 4 3 7 7 O 1.35980 * 120.00075 * 179.69918 * 6 5 4 8 8 C 1.42903 * 117.00000 * 359.97438 * 7 6 5 9 9 C 1.38680 * 120.00116 * 359.42113 * 6 5 4 10 10 C 1.50700 * 120.00427 * 180.30240 * 9 6 5 11 11 H 1.09000 * 109.46346 * 0.29214 * 10 9 6 12 12 C 1.47197 * 109.46908 * 240.30153 * 10 9 6 13 13 N 5.67452 * 153.25545 * 303.55414 * 2 1 3 14 14 C 1.50690 * 109.47267 * 120.29515 * 10 9 6 15 15 H 1.08002 * 120.00337 * 0.02562 * 14 10 9 16 16 C 1.37878 * 119.99922 * 180.02562 * 14 10 9 17 17 N 1.31513 * 120.00006 * 359.97438 * 16 14 10 18 18 Si 1.86800 * 120.00318 * 180.02562 * 16 14 10 19 19 H 1.48510 * 109.46852 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.47283 * 119.99892 * 18 16 14 21 21 H 1.48503 * 109.47385 * 240.00075 * 18 16 14 22 22 C 1.38162 * 119.99600 * 0.59787 * 9 6 5 23 23 H 1.08997 * 109.47244 * 59.99416 * 1 2 3 24 24 H 1.09001 * 109.47143 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46569 * 299.99701 * 1 2 3 26 26 H 1.07999 * 119.99895 * 0.02562 * 4 3 2 27 27 H 1.08002 * 119.99729 * 179.97438 * 5 4 3 28 28 H 1.08994 * 109.47633 * 179.97438 * 8 7 6 29 29 H 1.08999 * 109.46989 * 300.00188 * 8 7 6 30 30 H 1.08998 * 109.46866 * 59.99983 * 8 7 6 31 31 H 0.97001 * 120.00109 * 179.97438 * 17 16 14 32 32 H 1.08002 * 119.99555 * 179.72891 * 22 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2909 2.3750 0.0005 5 6 1.9179 3.6056 0.0000 6 6 3.3032 3.6782 -0.0065 7 8 3.9206 4.8897 -0.0132 8 6 3.0806 6.0459 -0.0137 9 6 4.0585 2.5151 -0.0003 10 6 5.5635 2.5939 -0.0005 11 1 5.8724 3.6392 -0.0007 12 6 6.0895 1.9267 -1.2025 13 7 6.4965 1.4114 -2.1281 14 6 6.1024 1.9109 1.2298 15 1 5.4232 1.4639 1.9407 16 6 7.4627 1.8564 1.4481 17 7 8.2899 2.4002 0.5822 18 14 8.1309 1.0091 2.9729 19 1 7.0020 0.4822 3.7812 20 1 9.0164 -0.1123 2.5681 21 1 8.9055 1.9843 3.7818 22 6 3.4312 1.2841 -0.0002 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3632 0.5138 0.8900 26 1 0.2124 2.3185 0.0014 27 1 1.3297 4.5114 0.0000 28 1 3.6984 6.9438 -0.0189 29 1 2.4477 6.0347 -0.9010 30 1 2.4551 6.0408 0.8789 31 1 9.2469 2.3623 0.7360 32 1 4.0195 0.3784 0.0002 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041228805.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:56 Heat of formation + Delta-G solvation = -46.962010 kcal Electronic energy + Delta-G solvation = -17462.857893 eV Core-core repulsion = 14581.589843 eV Total energy + Delta-G solvation = -2881.268051 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.39258 -39.78110 -38.02723 -36.77947 -35.10644 -33.19654 -30.85828 -29.40504 -27.92231 -27.60182 -25.80706 -23.10235 -22.31724 -19.50505 -18.86911 -18.40066 -17.88807 -16.85586 -16.61073 -16.59458 -16.25840 -15.53336 -15.30440 -14.89499 -14.76222 -13.99976 -13.77438 -13.54297 -13.51192 -13.26370 -13.07185 -12.92470 -12.61422 -12.49493 -12.33647 -12.29463 -11.95996 -11.40212 -11.27370 -11.14879 -10.69068 -9.76822 -8.57182 -8.24901 -6.42745 0.37546 0.60433 1.42510 1.45041 1.57777 2.26396 2.31714 2.45661 2.49570 2.66438 2.81985 3.10227 3.81597 3.89570 4.10747 4.34940 4.38514 4.50032 4.50733 4.56712 4.59120 4.66205 4.79807 4.86416 4.93637 5.07990 5.36664 5.38472 5.54117 5.65744 5.78578 6.00000 6.51695 6.64053 6.72802 7.18111 7.29510 8.81507 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.018145 B = 0.008056 C = 0.006805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.794070 B = 3474.695557 C = 4113.399381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.342 6.342 3 C 0.083 3.917 4 C -0.167 4.167 5 C -0.160 4.160 6 C 0.086 3.914 7 O -0.337 6.337 8 C 0.017 3.983 9 C -0.064 4.064 10 C 0.169 3.831 11 H 0.071 0.929 12 C 0.274 3.726 13 N -0.547 5.547 14 C -0.522 4.522 15 H 0.078 0.922 16 C 0.016 3.984 17 N -0.914 5.914 18 Si 0.966 3.034 19 H -0.256 1.256 20 H -0.287 1.287 21 H -0.272 1.272 22 C -0.120 4.120 23 H 0.066 0.934 24 H 0.114 0.886 25 H 0.068 0.932 26 H 0.166 0.834 27 H 0.167 0.833 28 H 0.110 0.890 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.267 0.733 32 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.501 4.334 2.613 19.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.257 6.257 3 C 0.038 3.962 4 C -0.185 4.185 5 C -0.178 4.178 6 C 0.041 3.959 7 O -0.251 6.251 8 C -0.077 4.077 9 C -0.066 4.066 10 C 0.148 3.852 11 H 0.089 0.911 12 C -0.041 4.041 13 N -0.226 5.226 14 C -0.560 4.560 15 H 0.096 0.904 16 C -0.185 4.185 17 N -0.551 5.551 18 Si 0.790 3.210 19 H -0.180 1.180 20 H -0.214 1.214 21 H -0.197 1.197 22 C -0.139 4.139 23 H 0.085 0.915 24 H 0.133 0.867 25 H 0.087 0.913 26 H 0.183 0.817 27 H 0.185 0.815 28 H 0.128 0.872 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -17.426 3.467 1.179 17.807 hybrid contribution 0.605 -0.114 0.852 1.051 sum -16.821 3.353 2.031 17.272 Atomic orbital electron populations 1.23338 0.76482 1.05367 1.02409 1.86062 1.23519 1.26720 1.89431 1.18873 0.91353 0.85407 1.00580 1.21263 1.01146 0.90463 1.05626 1.21267 0.91704 0.99789 1.05047 1.18802 0.91596 0.84984 1.00521 1.86153 1.36993 1.12846 1.89109 1.23338 0.96283 0.85684 1.02377 1.18959 0.94280 0.91040 1.02308 1.15430 0.87589 0.96516 0.85670 0.91113 1.30495 0.89952 0.91251 0.92379 1.80730 1.12712 1.13541 1.15585 1.21245 0.92148 1.37627 1.05012 0.90378 1.25938 0.97355 0.95444 0.99804 1.70056 1.03646 1.44298 1.37058 0.85360 0.78582 0.78054 0.78964 1.17976 1.21358 1.19677 1.20055 0.92310 0.97069 1.04489 0.91531 0.86750 0.91326 0.81654 0.81536 0.87191 0.91372 0.91198 0.92355 0.87101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.43 16 2 O -0.34 -10.34 10.50 -93.31 -0.98 -11.32 16 3 C 0.08 2.75 6.68 22.49 0.15 2.90 16 4 C -0.17 -4.31 9.03 22.36 0.20 -4.11 16 5 C -0.16 -4.27 9.03 22.36 0.20 -4.06 16 6 C 0.09 3.09 6.66 22.49 0.15 3.24 16 7 O -0.34 -11.71 9.26 -93.33 -0.86 -12.57 16 8 C 0.02 0.36 9.81 113.37 1.11 1.48 16 9 C -0.06 -2.76 4.72 -19.78 -0.09 -2.86 16 10 C 0.17 8.71 2.32 -14.10 -0.03 8.67 16 11 H 0.07 3.85 6.99 -2.39 -0.02 3.83 16 12 C 0.27 15.22 12.98 89.45 1.16 16.38 16 13 N -0.55 -31.39 18.53 19.99 0.37 -31.02 16 14 C -0.52 -28.09 8.22 25.60 0.21 -27.88 16 15 H 0.08 4.07 7.60 -2.91 -0.02 4.05 16 16 C 0.02 0.87 5.30 84.65 0.45 1.32 16 17 N -0.91 -53.57 12.37 21.45 0.27 -53.30 16 18 Si 0.97 43.21 29.54 68.60 2.03 45.23 16 19 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 20 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 21 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 22 C -0.12 -4.96 8.74 22.36 0.20 -4.77 16 23 H 0.07 0.95 7.66 -2.39 -0.02 0.93 16 24 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.07 0.97 7.66 -2.39 -0.02 0.95 16 26 H 0.17 2.82 6.29 -2.91 -0.02 2.81 16 27 H 0.17 3.01 6.29 -2.91 -0.02 2.99 16 28 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.07 1.15 7.66 -2.39 -0.02 1.13 16 30 H 0.07 1.18 7.66 -2.39 -0.02 1.17 16 31 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 32 H 0.11 5.01 8.04 -2.91 -0.02 4.99 16 Total: -1.00 -71.02 285.27 6.78 -64.24 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: 1.14 Total: 7.00 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: 4.82 Total: -8.27 kcal Atomic # 7 Polarization: -84.96 SS G_CDS: 0.64 Total: -84.33 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: -1.84 Total: -23.89 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Total: -71.02 6.78 -64.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041228805.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.281 kcal (2) G-P(sol) polarization free energy of solvation -71.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds