Wall clock time and date at job start Mon Mar 30 2020 05:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35987 * 117.00249 * 2 1 4 4 C 1.38717 * 119.99522 * 0.02562 * 3 2 1 5 5 C 1.38118 * 119.99383 * 180.02562 * 4 3 2 6 6 C 1.38709 * 120.00385 * 359.97438 * 5 4 3 7 7 O 1.35981 * 120.00542 * 180.02562 * 6 5 4 8 8 C 1.42901 * 116.99706 * 359.97438 * 7 6 5 9 9 C 1.38682 * 119.99975 * 359.97438 * 6 5 4 10 10 C 1.50703 * 120.00266 * 180.02562 * 9 6 5 11 11 H 1.09007 * 109.46560 * 0.02562 * 10 9 6 12 12 C 1.47200 * 109.47246 * 120.00128 * 10 9 6 13 13 N 5.67449 * 153.24354 * 56.45738 * 2 1 3 14 14 C 1.50701 * 109.47151 * 240.00509 * 10 9 6 15 15 H 1.08002 * 119.99761 * 359.97438 * 14 10 9 16 16 C 1.37871 * 119.99694 * 180.27762 * 14 10 9 17 17 N 1.31514 * 120.00482 * 359.71466 * 16 14 10 18 18 Si 1.86801 * 119.99746 * 179.72062 * 16 14 10 19 19 H 1.48494 * 109.47230 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.47301 * 119.99669 * 18 16 14 21 21 H 1.48498 * 109.47430 * 239.99516 * 18 16 14 22 22 C 1.38157 * 119.99873 * 0.27788 * 9 6 5 23 23 H 1.08998 * 109.46832 * 59.99363 * 1 2 3 24 24 H 1.08997 * 109.47140 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46799 * 299.99922 * 1 2 3 26 26 H 1.07994 * 120.00844 * 359.97438 * 4 3 2 27 27 H 1.08007 * 119.99621 * 179.97438 * 5 4 3 28 28 H 1.08994 * 109.47607 * 180.02562 * 8 7 6 29 29 H 1.08998 * 109.47137 * 300.00575 * 8 7 6 30 30 H 1.09007 * 109.47218 * 60.00099 * 8 7 6 31 31 H 0.96995 * 120.00207 * 179.97438 * 17 16 14 32 32 H 1.07997 * 119.99971 * 179.69677 * 22 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2909 2.3750 0.0005 5 6 1.9180 3.6056 0.0000 6 6 3.3032 3.6782 -0.0005 7 8 3.9206 4.8897 -0.0005 8 6 3.0807 6.0458 -0.0005 9 6 4.0585 2.5151 0.0000 10 6 5.5635 2.5939 0.0000 11 1 5.8725 3.6392 0.0000 12 6 6.0897 1.9271 1.2022 13 7 6.4959 1.4116 2.1292 14 6 6.1023 1.9103 -1.2302 15 1 5.4229 1.4631 -1.9407 16 6 7.4628 1.8503 -1.4454 17 7 8.2901 2.3945 -0.5800 18 14 8.1310 0.9961 -2.9663 19 1 7.0021 0.4700 -3.7748 20 1 8.9108 1.9661 -3.7765 21 1 9.0116 -0.1272 -2.5566 22 6 3.4313 1.2841 -0.0047 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.2124 2.3186 0.0005 27 1 1.3297 4.5114 0.0000 28 1 3.6985 6.9438 -0.0010 29 1 2.4514 6.0377 -0.8904 30 1 2.4514 6.0378 0.8895 31 1 9.2473 2.3520 -0.7312 32 1 4.0194 0.3784 -0.0093 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041228807.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:59 Heat of formation + Delta-G solvation = -47.056682 kcal Electronic energy + Delta-G solvation = -17463.068646 eV Core-core repulsion = 14581.796490 eV Total energy + Delta-G solvation = -2881.272156 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.39230 -39.78033 -38.01997 -36.77064 -35.10040 -33.19571 -30.85837 -29.40401 -27.92165 -27.60129 -25.80858 -23.10158 -22.31795 -19.50734 -18.86680 -18.40035 -17.88733 -16.85431 -16.61127 -16.59494 -16.25820 -15.53282 -15.30467 -14.89249 -14.76045 -13.99874 -13.77380 -13.54241 -13.50885 -13.26170 -13.07110 -12.92119 -12.61207 -12.49440 -12.33705 -12.29315 -11.95952 -11.40082 -11.27609 -11.14838 -10.69011 -9.76769 -8.57180 -8.24868 -6.42734 0.37542 0.60461 1.42443 1.45092 1.57773 2.26032 2.31248 2.45448 2.49542 2.66427 2.82041 3.10163 3.81554 3.89577 4.10625 4.34946 4.38538 4.50042 4.50704 4.56744 4.59082 4.66258 4.79807 4.86471 4.93640 5.08018 5.36702 5.38534 5.54073 5.65776 5.78569 5.99905 6.51724 6.64021 6.72830 7.18128 7.29516 8.81507 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.018143 B = 0.008059 C = 0.006806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.920922 B = 3473.354471 C = 4112.941654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.343 6.343 3 C 0.082 3.918 4 C -0.167 4.167 5 C -0.160 4.160 6 C 0.086 3.914 7 O -0.336 6.336 8 C 0.017 3.983 9 C -0.064 4.064 10 C 0.170 3.830 11 H 0.071 0.929 12 C 0.274 3.726 13 N -0.547 5.547 14 C -0.522 4.522 15 H 0.078 0.922 16 C 0.016 3.984 17 N -0.914 5.914 18 Si 0.966 3.034 19 H -0.256 1.256 20 H -0.272 1.272 21 H -0.287 1.287 22 C -0.120 4.120 23 H 0.068 0.932 24 H 0.114 0.886 25 H 0.066 0.934 26 H 0.166 0.834 27 H 0.167 0.833 28 H 0.110 0.890 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.267 0.733 32 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.501 4.340 -2.630 19.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.257 6.257 3 C 0.038 3.962 4 C -0.185 4.185 5 C -0.178 4.178 6 C 0.041 3.959 7 O -0.251 6.251 8 C -0.077 4.077 9 C -0.066 4.066 10 C 0.148 3.852 11 H 0.089 0.911 12 C -0.041 4.041 13 N -0.226 5.226 14 C -0.560 4.560 15 H 0.096 0.904 16 C -0.185 4.185 17 N -0.551 5.551 18 Si 0.790 3.210 19 H -0.180 1.180 20 H -0.197 1.197 21 H -0.214 1.214 22 C -0.139 4.139 23 H 0.087 0.913 24 H 0.132 0.868 25 H 0.085 0.915 26 H 0.183 0.817 27 H 0.185 0.815 28 H 0.128 0.872 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -17.427 3.473 -1.196 17.810 hybrid contribution 0.606 -0.123 -0.847 1.049 sum -16.821 3.350 -2.043 17.273 Atomic orbital electron populations 1.23337 0.76484 1.05365 1.02407 1.86062 1.23517 1.26725 1.89435 1.18875 0.91356 0.85406 1.00592 1.21263 1.01144 0.90464 1.05619 1.21266 0.91706 0.99791 1.05059 1.18798 0.91593 0.84982 1.00507 1.86154 1.36985 1.12843 1.89107 1.23339 0.96285 0.85687 1.02376 1.18959 0.94278 0.91044 1.02326 1.15435 0.87585 0.96522 0.85652 0.91104 1.30540 0.89923 0.91234 0.92376 1.80774 1.12749 1.13541 1.15540 1.21249 0.92128 1.37582 1.05058 0.90372 1.25935 0.97358 0.95478 0.99768 1.70053 1.03628 1.44272 1.37103 0.85360 0.78586 0.78052 0.78969 1.17975 1.19671 1.21375 1.20052 0.92308 0.97075 1.04471 0.91335 0.86752 0.91525 0.81655 0.81536 0.87188 0.91195 0.91377 0.92357 0.87093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.43 16 2 O -0.34 -10.34 10.50 -93.40 -0.98 -11.32 16 3 C 0.08 2.74 6.69 22.49 0.15 2.89 16 4 C -0.17 -4.31 9.03 22.36 0.20 -4.10 16 5 C -0.16 -4.27 9.03 22.35 0.20 -4.07 16 6 C 0.09 3.10 6.66 22.49 0.15 3.25 16 7 O -0.34 -11.70 9.26 -93.34 -0.86 -12.56 16 8 C 0.02 0.36 9.81 113.37 1.11 1.48 16 9 C -0.06 -2.77 4.72 -19.78 -0.09 -2.86 16 10 C 0.17 8.71 2.32 -14.09 -0.03 8.68 16 11 H 0.07 3.85 6.99 -2.38 -0.02 3.84 16 12 C 0.27 15.21 12.98 89.44 1.16 16.38 16 13 N -0.55 -31.42 18.54 20.00 0.37 -31.05 16 14 C -0.52 -28.08 8.21 25.60 0.21 -27.87 16 15 H 0.08 4.07 7.59 -2.91 -0.02 4.05 16 16 C 0.02 0.87 5.29 84.65 0.45 1.32 16 17 N -0.91 -53.56 12.37 21.45 0.27 -53.30 16 18 Si 0.97 43.21 29.54 68.60 2.03 45.24 16 19 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 20 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 21 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 22 C -0.12 -4.96 8.73 22.35 0.20 -4.76 16 23 H 0.07 0.97 7.66 -2.39 -0.02 0.95 16 24 H 0.11 1.50 8.14 -2.39 -0.02 1.49 16 25 H 0.07 0.95 7.66 -2.39 -0.02 0.94 16 26 H 0.17 2.82 6.29 -2.91 -0.02 2.81 16 27 H 0.17 3.01 6.29 -2.91 -0.02 2.99 16 28 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.07 1.18 7.66 -2.39 -0.02 1.17 16 30 H 0.07 1.15 7.66 -2.38 -0.02 1.13 16 31 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 32 H 0.11 5.01 8.04 -2.91 -0.02 4.99 16 Total: -1.00 -71.01 285.26 6.77 -64.24 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: 1.14 Total: 7.00 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: 4.82 Total: -8.25 kcal Atomic # 7 Polarization: -84.98 SS G_CDS: 0.64 Total: -84.34 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: -1.84 Total: -23.88 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -71.01 6.77 -64.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041228807.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.181 kcal (2) G-P(sol) polarization free energy of solvation -71.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds