Wall clock time and date at job start Mon Mar 30 2020 05:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35898 * 116.99641 * 2 1 4 4 C 1.38795 * 120.02865 * 0.02562 * 3 2 1 5 5 C 1.38150 * 120.05594 * 180.02562 * 4 3 2 6 6 C 1.38198 * 120.11224 * 0.02562 * 5 4 3 7 7 C 1.50698 * 119.97565 * 180.02562 * 6 5 4 8 8 H 1.09003 * 109.46922 * 180.02562 * 7 6 5 9 9 C 1.47195 * 109.47305 * 59.99836 * 7 6 5 10 10 N 6.95376 * 105.38008 * 18.50806 * 2 1 3 11 11 C 1.50703 * 109.46730 * 299.99846 * 7 6 5 12 12 H 1.07995 * 120.00136 * 0.02562 * 11 7 6 13 13 C 1.37876 * 119.99613 * 180.02562 * 11 7 6 14 14 N 1.31517 * 119.99829 * 180.02562 * 13 11 7 15 15 Si 1.86799 * 120.00239 * 359.97438 * 13 11 7 16 16 H 1.48494 * 109.47253 * 90.00281 * 15 13 11 17 17 H 1.48500 * 109.47321 * 210.00177 * 15 13 11 18 18 H 1.48501 * 109.46978 * 330.00272 * 15 13 11 19 19 C 1.38753 * 120.05092 * 359.97438 * 6 5 4 20 20 O 1.35891 * 120.02716 * 179.97438 * 19 6 5 21 21 C 1.42902 * 117.00279 * 180.02562 * 20 19 6 22 22 C 1.38613 * 120.02671 * 180.02562 * 3 2 1 23 23 H 1.08992 * 109.47713 * 60.00038 * 1 2 3 24 24 H 1.09003 * 109.46815 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47334 * 299.99304 * 1 2 3 26 26 H 1.08002 * 119.97209 * 359.75001 * 4 3 2 27 27 H 1.08004 * 119.94625 * 179.97438 * 5 4 3 28 28 H 0.97002 * 119.99615 * 180.02562 * 14 13 11 29 29 H 1.08993 * 109.47648 * 180.02562 * 21 20 19 30 30 H 1.09002 * 109.47219 * 300.00507 * 21 20 19 31 31 H 1.09008 * 109.47039 * 60.00171 * 21 20 19 32 32 H 1.07994 * 120.05441 * 359.96223 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2905 2.3753 0.0005 5 6 1.9170 3.6065 0.0000 6 6 3.2969 3.6823 -0.0016 7 6 3.9771 5.0270 -0.0016 8 1 5.0582 4.8873 -0.0034 9 6 3.5809 5.7774 1.2011 10 7 3.2733 6.3580 2.1283 11 6 3.5685 5.7966 -1.2312 12 1 2.8843 5.3562 -1.9413 13 6 4.0681 7.0630 -1.4495 14 7 3.7111 7.7348 -2.5222 15 14 5.2509 7.8250 -0.2208 16 1 6.6454 7.4797 -0.5965 17 1 5.0879 9.3011 -0.2267 18 1 4.9598 7.3002 1.1375 19 6 4.0566 2.5212 -0.0021 20 8 5.4134 2.5962 -0.0042 21 6 6.1316 1.3608 -0.0053 22 6 3.4301 1.2842 -0.0005 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 0.2120 2.3187 -0.0031 27 1 1.3274 4.5114 0.0000 28 1 4.0629 8.6256 -2.6760 29 1 7.2026 1.5630 -0.0065 30 1 5.8712 0.7885 0.8851 31 1 5.8685 0.7884 -0.8949 32 1 4.0196 0.3793 -0.0003 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041228809.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:22 Heat of formation + Delta-G solvation = -34.105597 kcal Electronic energy + Delta-G solvation = -17486.674631 eV Core-core repulsion = 14605.964076 eV Total energy + Delta-G solvation = -2880.710555 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.49426 -39.84749 -38.37189 -37.02803 -35.10114 -33.18638 -31.30273 -29.72112 -28.00567 -27.72131 -25.29827 -23.13688 -22.43439 -19.85747 -19.41064 -18.11331 -17.34084 -17.16569 -16.93558 -16.72474 -16.28623 -15.76545 -15.59859 -15.05507 -14.93032 -14.34737 -14.04094 -13.93148 -13.78045 -13.29887 -13.08128 -13.01636 -12.59427 -12.41625 -12.28778 -12.05064 -11.76661 -11.57159 -11.35739 -11.31823 -10.84465 -9.49158 -8.84582 -8.39192 -6.47201 0.43398 0.50538 1.28502 1.33231 1.40804 2.00828 2.05209 2.26872 2.27607 2.58030 2.73859 2.97725 3.66880 3.91449 4.13545 4.15029 4.33915 4.37862 4.46775 4.52969 4.53672 4.63517 4.74047 4.81719 4.86035 4.94770 5.23387 5.32038 5.41924 5.62360 5.71291 6.18451 6.38344 6.55871 6.57808 6.90057 7.18811 8.74464 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.024913 B = 0.007354 C = 0.006618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.641929 B = 3806.310751 C = 4229.591142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.327 6.327 3 C 0.156 3.844 4 C -0.242 4.242 5 C -0.038 4.038 6 C -0.137 4.137 7 C 0.148 3.852 8 H 0.089 0.911 9 C 0.249 3.751 10 N -0.518 5.518 11 C -0.504 4.504 12 H 0.065 0.935 13 C 0.039 3.961 14 N -0.924 5.924 15 Si 0.892 3.108 16 H -0.252 1.252 17 H -0.291 1.291 18 H -0.238 1.238 19 C 0.167 3.833 20 O -0.327 6.327 21 C 0.015 3.985 22 C -0.243 4.243 23 H 0.062 0.938 24 H 0.124 0.876 25 H 0.063 0.937 26 H 0.151 0.849 27 H 0.120 0.880 28 H 0.270 0.730 29 H 0.119 0.881 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.796 -17.789 4.098 18.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.240 6.240 3 C 0.110 3.890 4 C -0.260 4.260 5 C -0.057 4.057 6 C -0.139 4.139 7 C 0.126 3.874 8 H 0.106 0.894 9 C -0.066 4.066 10 N -0.197 5.197 11 C -0.542 4.542 12 H 0.083 0.917 13 C -0.162 4.162 14 N -0.562 5.562 15 Si 0.716 3.284 16 H -0.176 1.176 17 H -0.218 1.218 18 H -0.161 1.161 19 C 0.120 3.880 20 O -0.240 6.240 21 C -0.079 4.079 22 C -0.262 4.262 23 H 0.080 0.920 24 H 0.143 0.857 25 H 0.081 0.919 26 H 0.168 0.832 27 H 0.138 0.862 28 H 0.080 0.920 29 H 0.137 0.863 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -1.016 -16.788 5.392 17.661 hybrid contribution 0.272 0.802 -0.268 0.889 sum -0.744 -15.985 5.123 16.803 Atomic orbital electron populations 1.23366 0.76402 1.05655 1.02282 1.86007 1.23480 1.26105 1.88434 1.18697 0.91700 0.84465 0.94156 1.21259 1.01110 0.91186 1.12481 1.20703 0.92986 0.97892 0.94083 1.18841 0.93485 0.91857 1.09726 1.15815 0.98316 0.88542 0.84711 0.89352 1.30530 0.90962 0.92033 0.93035 1.80972 1.12080 1.12251 1.14397 1.20876 1.28971 1.00195 1.04195 0.91662 1.25620 0.96960 0.97350 0.96296 1.69957 1.44964 1.13136 1.28111 0.86666 0.81388 0.78158 0.82205 1.17635 1.21755 1.16130 1.18432 0.83035 0.92303 0.94184 1.86121 1.14780 1.34942 1.88151 1.23411 0.97435 0.84523 1.02502 1.20436 0.92967 0.97191 1.15582 0.91956 0.85748 0.91866 0.83182 0.86192 0.92030 0.86286 0.91291 0.91468 0.82403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.38 16 2 O -0.33 -7.92 10.50 -92.40 -0.97 -8.89 16 3 C 0.16 4.49 6.68 22.49 0.15 4.64 16 4 C -0.24 -7.31 9.04 22.38 0.20 -7.11 16 5 C -0.04 -1.43 8.79 22.24 0.20 -1.23 16 6 C -0.14 -5.50 4.73 -19.75 -0.09 -5.59 16 7 C 0.15 6.78 1.94 -14.09 -0.03 6.75 16 8 H 0.09 3.95 6.41 -2.39 -0.02 3.94 16 9 C 0.25 11.87 10.51 89.44 0.94 12.81 16 10 N -0.52 -25.53 17.68 20.01 0.35 -25.18 16 11 C -0.50 -27.01 8.80 25.60 0.23 -26.78 16 12 H 0.07 3.78 7.84 -2.91 -0.02 3.76 16 13 C 0.04 2.17 5.45 84.65 0.46 2.64 16 14 N -0.92 -55.18 13.96 21.45 0.30 -54.88 16 15 Si 0.89 43.00 26.68 68.60 1.83 44.83 16 16 H -0.25 -11.37 7.11 99.48 0.71 -10.66 16 17 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 18 H -0.24 -11.37 4.14 99.48 0.41 -10.96 16 19 C 0.17 5.76 6.66 22.49 0.15 5.91 16 20 O -0.33 -10.45 9.26 -92.32 -0.85 -11.31 16 21 C 0.02 0.31 9.81 113.37 1.11 1.42 16 22 C -0.24 -7.08 8.97 22.46 0.20 -6.88 16 23 H 0.06 0.94 7.66 -2.39 -0.02 0.92 16 24 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.06 0.92 7.66 -2.39 -0.02 0.90 16 26 H 0.15 3.61 6.29 -2.91 -0.02 3.60 16 27 H 0.12 4.71 8.04 -2.91 -0.02 4.69 16 28 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 29 H 0.12 1.83 8.14 -2.39 -0.02 1.82 16 30 H 0.07 1.15 7.66 -2.39 -0.02 1.13 16 31 H 0.07 1.18 7.66 -2.38 -0.02 1.16 16 32 H 0.16 3.65 6.30 -2.91 -0.02 3.64 16 Total: -1.00 -67.63 277.73 6.13 -61.50 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: 0.85 Total: 5.99 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: 4.63 Total: -12.05 kcal Atomic # 7 Polarization: -80.72 SS G_CDS: 0.65 Total: -80.06 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -1.82 Total: -20.20 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 1.83 Total: 44.83 kcal Total: -67.63 6.13 -61.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041228809.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.391 kcal (2) G-P(sol) polarization free energy of solvation -67.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds