Wall clock time and date at job start Mon Mar 30 2020 05:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35896 * 117.00016 * 2 1 4 4 C 1.38788 * 120.03199 * 0.02562 * 3 2 1 5 5 C 1.38152 * 120.05869 * 179.97438 * 4 3 2 6 6 C 1.38200 * 120.10848 * 359.97438 * 5 4 3 7 7 C 1.50699 * 119.97310 * 179.97438 * 6 5 4 8 8 H 1.08996 * 109.47258 * 179.97438 * 7 6 5 9 9 C 1.47206 * 109.46910 * 300.00163 * 7 6 5 10 10 N 6.95328 * 105.38471 * 341.48772 * 2 1 3 11 11 C 1.50703 * 109.47227 * 60.00152 * 7 6 5 12 12 H 1.07997 * 119.99722 * 359.97438 * 11 7 6 13 13 C 1.37873 * 119.99873 * 180.02562 * 11 7 6 14 14 N 1.31520 * 119.99883 * 179.97438 * 13 11 7 15 15 Si 1.86800 * 120.00328 * 0.02562 * 13 11 7 16 16 H 1.48504 * 109.47207 * 89.99977 * 15 13 11 17 17 H 1.48494 * 109.47205 * 210.00004 * 15 13 11 18 18 H 1.48501 * 109.47041 * 330.00003 * 15 13 11 19 19 C 1.38749 * 120.05443 * 0.26032 * 6 5 4 20 20 O 1.35900 * 120.02804 * 179.72385 * 19 6 5 21 21 C 1.42897 * 116.99790 * 179.97438 * 20 19 6 22 22 C 1.38620 * 120.02524 * 179.97438 * 3 2 1 23 23 H 1.08995 * 109.47347 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46613 * 299.99972 * 1 2 3 25 25 H 1.09000 * 109.47043 * 59.99249 * 1 2 3 26 26 H 1.08009 * 119.97024 * 359.97438 * 4 3 2 27 27 H 1.07999 * 119.94429 * 180.02562 * 5 4 3 28 28 H 0.97001 * 119.99993 * 180.02562 * 14 13 11 29 29 H 1.09002 * 109.47075 * 179.97438 * 21 20 19 30 30 H 1.08996 * 109.47695 * 300.00480 * 21 20 19 31 31 H 1.09001 * 109.47130 * 60.00316 * 21 20 19 32 32 H 1.08002 * 120.05237 * 0.04964 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2907 2.3752 0.0005 5 6 1.9173 3.6065 0.0011 6 6 3.2973 3.6821 0.0016 7 6 3.9776 5.0267 0.0016 8 1 5.0586 4.8870 0.0025 9 6 3.5804 5.7776 -1.2006 10 7 3.2737 6.3572 -2.1286 11 6 3.5701 5.7959 1.2318 12 1 2.8864 5.3553 1.9423 13 6 4.0692 7.0626 1.4496 14 7 3.7131 7.7341 2.5229 15 14 5.2500 7.8255 0.2196 16 1 4.4806 8.5746 -0.8062 17 1 6.1683 8.7546 0.9257 18 1 6.0398 6.7540 -0.4386 19 6 4.0568 2.5209 -0.0038 20 8 5.4137 2.5959 -0.0090 21 6 6.1317 1.3604 -0.0139 22 6 3.4302 1.2840 0.0005 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5140 -0.8899 26 1 0.2121 2.3188 0.0005 27 1 1.3278 4.5114 0.0019 28 1 4.0640 8.6254 2.6760 29 1 7.2027 1.5626 -0.0181 30 1 5.8734 0.7865 0.8760 31 1 5.8665 0.7896 -0.9038 32 1 4.0197 0.3790 0.0001 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041228811.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:26 Heat of formation + Delta-G solvation = -20.688939 kcal Electronic energy + Delta-G solvation = -17481.894747 eV Core-core repulsion = 14601.765982 eV Total energy + Delta-G solvation = -2880.128765 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.25667 -38.72875 -36.82458 -35.44200 -33.17536 -31.48098 -30.04285 -28.37851 -27.09590 -26.51607 -23.46882 -21.84819 -21.07622 -18.48318 -17.66047 -16.75180 -16.01490 -15.73297 -15.69433 -15.30308 -15.09415 -14.57243 -14.03198 -13.61296 -12.92184 -12.74589 -12.53674 -12.36520 -12.23964 -12.13756 -11.74853 -11.53927 -11.32574 -11.08605 -10.88479 -10.53428 -10.29997 -10.11362 -9.84460 -9.46698 -8.78419 -8.24125 -7.52542 -6.27814 -4.33461 1.74874 1.81142 3.22242 3.30211 3.31495 3.38319 3.63972 3.81723 3.91819 4.11770 4.29535 4.95607 5.03006 5.17266 5.19438 5.21873 5.31585 5.33833 5.46456 5.47572 5.61139 5.69180 5.77896 5.86322 6.11456 6.45522 6.59068 6.78112 6.95463 7.16738 7.34425 7.50275 7.76004 8.25665 8.57773 8.83941 9.30003 10.82740 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.024911 B = 0.007354 C = 0.006618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.709211 B = 3806.310775 C = 4230.094842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.322 6.322 3 C 0.148 3.852 4 C -0.243 4.243 5 C -0.025 4.025 6 C -0.100 4.100 7 C 0.141 3.859 8 H 0.087 0.913 9 C 0.230 3.770 10 N -0.495 5.495 11 C -0.513 4.513 12 H 0.093 0.907 13 C 0.087 3.913 14 N -0.879 5.879 15 Si 0.850 3.150 16 H -0.268 1.268 17 H -0.280 1.280 18 H -0.258 1.258 19 C 0.167 3.833 20 O -0.303 6.303 21 C 0.026 3.974 22 C -0.243 4.243 23 H 0.094 0.906 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.125 0.875 27 H 0.136 0.864 28 H 0.270 0.730 29 H 0.097 0.903 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.104 -15.399 -3.110 15.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.236 6.236 3 C 0.103 3.897 4 C -0.262 4.262 5 C -0.043 4.043 6 C -0.102 4.102 7 C 0.119 3.881 8 H 0.104 0.896 9 C -0.086 4.086 10 N -0.173 5.173 11 C -0.551 4.551 12 H 0.111 0.889 13 C -0.119 4.119 14 N -0.514 5.514 15 Si 0.676 3.324 16 H -0.193 1.193 17 H -0.206 1.206 18 H -0.182 1.182 19 C 0.121 3.879 20 O -0.216 6.216 21 C -0.069 4.069 22 C -0.263 4.263 23 H 0.113 0.887 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.143 0.857 27 H 0.154 0.846 28 H 0.080 0.920 29 H 0.116 0.884 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.325 -14.365 -4.396 15.081 hybrid contribution 0.418 0.233 -0.111 0.491 sum -0.907 -14.133 -4.507 14.862 Atomic orbital electron populations 1.23001 0.78684 1.03341 1.01576 1.85993 1.21174 1.27395 1.89024 1.18567 0.91475 0.83851 0.95801 1.21076 0.99715 0.92124 1.13280 1.20749 0.93312 0.97189 0.93069 1.18956 0.92688 0.92497 1.06042 1.16010 0.98135 0.87354 0.86605 0.89554 1.30771 0.91682 0.93038 0.93098 1.80967 1.11101 1.11729 1.13515 1.20745 1.30480 1.00291 1.03568 0.88867 1.24946 0.95270 0.96684 0.94969 1.69843 1.42990 1.12485 1.26125 0.87198 0.82294 0.80827 0.82107 1.19280 1.20556 1.18213 1.18447 0.82398 0.92409 0.94670 1.86174 1.15224 1.31840 1.88328 1.23040 0.96801 0.85918 1.01144 1.20191 0.92487 0.97051 1.16544 0.88710 0.92538 0.92734 0.85739 0.84642 0.92023 0.88437 0.92637 0.92954 0.85045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.27 16 2 O -0.32 -4.44 10.49 -19.41 -0.20 -4.65 16 3 C 0.15 2.32 6.68 -39.24 -0.26 2.06 16 4 C -0.24 -3.87 9.04 -39.41 -0.36 -4.22 16 5 C -0.02 -0.47 8.79 -39.63 -0.35 -0.81 16 6 C -0.10 -2.02 4.73 -104.45 -0.49 -2.51 16 7 C 0.14 3.26 1.93 -95.71 -0.19 3.08 16 8 H 0.09 2.00 6.05 -51.93 -0.31 1.68 16 9 C 0.23 5.55 10.97 -20.75 -0.23 5.33 16 10 N -0.49 -12.40 18.38 42.17 0.78 -11.63 16 11 C -0.51 -13.53 8.80 -34.44 -0.30 -13.84 16 12 H 0.09 2.60 7.84 -52.49 -0.41 2.18 16 13 C 0.09 2.41 5.45 -17.82 -0.10 2.31 16 14 N -0.88 -25.61 13.96 55.43 0.77 -24.84 16 15 Si 0.85 21.37 25.33 -169.99 -4.31 17.06 16 16 H -0.27 -7.03 7.11 56.52 0.40 -6.63 16 17 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.26 -6.20 6.51 56.52 0.37 -5.83 16 19 C 0.17 3.00 6.66 -39.24 -0.26 2.74 16 20 O -0.30 -5.14 9.26 -19.43 -0.18 -5.32 16 21 C 0.03 0.30 9.81 101.05 0.99 1.29 16 22 C -0.24 -3.86 8.97 -39.29 -0.35 -4.21 16 23 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.06 0.51 7.66 -51.93 -0.40 0.12 16 25 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 26 H 0.12 1.64 6.29 -52.48 -0.33 1.31 16 27 H 0.14 2.57 8.04 -52.49 -0.42 2.15 16 28 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 29 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.06 0.57 7.65 -51.93 -0.40 0.18 16 31 H 0.05 0.53 7.67 -51.93 -0.40 0.13 16 32 H 0.13 1.76 6.30 -52.49 -0.33 1.43 16 LS Contribution 279.54 15.07 4.21 4.21 Total: -1.00 -31.29 279.54 -3.24 -34.53 By element: Atomic # 1 Polarization: 1.56 SS G_CDS: -3.41 Total: -1.86 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: -0.90 Total: -7.52 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: 1.55 Total: -36.46 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: -0.38 Total: -9.97 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.31 Total: 17.06 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -31.29 -3.24 -34.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041228811.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.843 kcal (2) G-P(sol) polarization free energy of solvation -31.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds