Wall clock time and date at job start Mon Mar 30 2020 05:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 N 1.12404 * 1 3 3 N 1.12397 * 179.97438 * 2 1 4 4 C 1.46496 * 120.00131 * 92.08228 * 3 2 1 5 5 C 1.53008 * 109.47182 * 119.99788 * 4 3 2 6 6 C 1.53004 * 109.47083 * 179.97438 * 5 4 3 7 7 O 1.42897 * 109.46866 * 179.97438 * 6 5 4 8 8 C 1.35676 * 116.99687 * 180.02562 * 7 6 5 9 9 C 1.39308 * 119.82044 * 359.72874 * 8 7 6 10 10 C 1.36437 * 120.18863 * 179.75644 * 9 8 7 11 11 C 1.40836 * 119.80745 * 0.52106 * 10 9 8 12 12 C 1.41216 * 120.17949 * 179.71927 * 11 10 9 13 13 H 1.08000 * 119.99881 * 204.56305 * 12 11 10 14 14 C 1.39893 * 119.99776 * 24.56420 * 12 11 10 15 15 N 1.30880 * 120.00328 * 17.92398 * 14 12 11 16 16 Si 1.86801 * 119.99652 * 197.92340 * 14 12 11 17 17 H 1.48505 * 109.47066 * 60.00333 * 16 14 12 18 18 H 1.48505 * 109.47144 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47265 * 300.00277 * 16 14 12 20 20 C 1.40836 * 119.64370 * 359.73211 * 11 10 9 21 21 C 1.36437 * 119.81001 * 0.02562 * 20 11 10 22 22 H 1.09003 * 109.47314 * 359.97438 * 4 3 2 23 23 H 1.09009 * 109.47179 * 239.99857 * 4 3 2 24 24 H 1.09004 * 109.46830 * 60.00398 * 5 4 3 25 25 H 1.08996 * 109.47212 * 300.00383 * 5 4 3 26 26 H 1.09008 * 109.46389 * 60.00263 * 6 5 4 27 27 H 1.08996 * 109.47686 * 300.00432 * 6 5 4 28 28 H 1.08007 * 119.90887 * 0.02562 * 9 8 7 29 29 H 1.08001 * 120.09804 * 180.25497 * 10 9 8 30 30 H 0.96998 * 119.99635 * 180.02562 * 15 14 12 31 31 H 1.08001 * 120.09637 * 179.97438 * 20 11 10 32 32 H 1.07997 * 119.91034 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 7 1.1240 0.0000 0.0000 3 7 2.2480 0.0005 0.0000 4 6 2.9805 0.0469 -1.2678 5 6 3.8596 1.2988 -1.3035 6 6 4.6251 1.3469 -2.6274 7 8 5.4456 2.5163 -2.6608 8 6 6.1950 2.7112 -3.7749 9 6 6.1431 1.7862 -4.8153 10 6 6.8897 1.9773 -5.9411 11 6 7.7229 3.1081 -6.0451 12 6 8.5035 3.3105 -7.2043 13 1 9.4023 3.9071 -7.1526 14 6 8.1125 2.7385 -8.4196 15 7 6.8818 2.3235 -8.5816 16 14 9.3469 2.5668 -9.8110 17 1 10.4817 1.7195 -9.3643 18 1 8.6882 1.9339 -10.9819 19 1 9.8524 3.9099 -10.1928 20 6 7.7735 4.0357 -4.9865 21 6 7.0167 3.8323 -3.8697 22 1 2.2722 0.0763 -2.0959 23 1 3.6076 -0.8401 -1.3579 24 1 4.5679 1.2689 -0.4755 25 1 3.2325 2.1857 -1.2134 26 1 3.9169 1.3765 -3.4555 27 1 5.2521 0.4599 -2.7170 28 1 5.5068 0.9175 -4.7323 29 1 6.8453 1.2614 -6.7485 30 1 6.6109 1.9265 -9.4242 31 1 8.4102 4.9051 -5.0583 32 1 7.0546 4.5423 -3.0568 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042416236.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:43 Heat of formation + Delta-G solvation = 76.637373 kcal Electronic energy + Delta-G solvation = -16329.615792 eV Core-core repulsion = 13486.000164 eV Total energy + Delta-G solvation = -2843.615628 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.91131 -38.89686 -37.06151 -36.39351 -33.67870 -32.92398 -29.68478 -29.20767 -26.96234 -24.71401 -22.57510 -20.98539 -20.30707 -19.29925 -18.27885 -17.94326 -17.37568 -16.82192 -16.14868 -15.65917 -15.29007 -14.46810 -13.98566 -13.92490 -13.18549 -12.71715 -12.50167 -12.30530 -12.04256 -11.81372 -11.25358 -11.16181 -11.06020 -10.96021 -10.57155 -10.35883 -9.93295 -9.83678 -9.40583 -9.19876 -9.04110 -7.69189 -7.05595 -6.76282 -4.28645 1.06675 2.14516 2.74753 2.86867 2.93319 3.05438 3.08158 3.19730 3.92170 3.96710 4.53095 4.58423 4.84932 4.94928 5.19111 5.31652 5.50316 5.55658 5.63315 5.94757 6.04476 6.07285 6.24857 6.68760 6.85844 7.03367 7.24551 7.37456 7.52299 7.86778 7.96691 8.11728 8.40343 8.61243 8.86812 8.95599 9.30594 10.18499 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.045486 B = 0.003589 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.421157 B = 7799.631550 C = 8256.091822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.190 5.190 2 N 0.278 4.722 3 N -0.375 5.375 4 C 0.076 3.924 5 C -0.118 4.118 6 C 0.071 3.929 7 O -0.328 6.328 8 C -0.011 4.011 9 C -0.173 4.173 10 C -0.135 4.135 11 C 0.088 3.912 12 C -0.463 4.463 13 H 0.077 0.923 14 C 0.075 3.925 15 N -0.800 5.800 16 Si 0.908 3.092 17 H -0.264 1.264 18 H -0.279 1.279 19 H -0.266 1.266 20 C -0.197 4.197 21 C -0.112 4.112 22 H 0.068 0.932 23 H 0.108 0.892 24 H 0.089 0.911 25 H 0.074 0.926 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.094 0.906 29 H 0.121 0.879 30 H 0.280 0.720 31 H 0.100 0.900 32 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.631 -5.052 8.081 11.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.182 5.182 2 N 0.280 4.720 3 N -0.291 5.291 4 C -0.052 4.052 5 C -0.157 4.157 6 C -0.007 4.007 7 O -0.244 6.244 8 C -0.055 4.055 9 C -0.192 4.192 10 C -0.155 4.155 11 C 0.086 3.914 12 C -0.493 4.493 13 H 0.095 0.905 14 C -0.142 4.142 15 N -0.426 5.426 16 Si 0.732 3.268 17 H -0.189 1.189 18 H -0.204 1.204 19 H -0.190 1.190 20 C -0.217 4.217 21 C -0.130 4.130 22 H 0.086 0.914 23 H 0.126 0.874 24 H 0.108 0.892 25 H 0.092 0.908 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.112 0.888 29 H 0.139 0.861 30 H 0.091 0.909 31 H 0.118 0.882 32 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.185 -5.058 8.546 11.699 hybrid contribution 0.462 -0.270 -1.452 1.547 sum -5.723 -5.327 7.094 10.557 Atomic orbital electron populations 1.87687 0.88707 1.43576 0.98261 1.41547 1.01864 1.11468 1.17130 1.70821 0.88370 1.44376 1.25510 1.22495 0.96881 1.01486 0.84312 1.21534 0.98926 0.96443 0.98816 1.22270 0.93306 0.88980 0.96107 1.85773 1.56751 1.42582 1.39275 1.18546 1.00283 0.99212 0.87410 1.20604 1.03838 0.99051 0.95709 1.20944 0.99595 0.98548 0.96364 1.17600 0.91588 0.90048 0.92188 1.19452 1.08783 1.28533 0.92553 0.90482 1.25880 0.95152 0.93118 1.00032 1.69829 1.16302 1.30393 1.26066 0.86378 0.81272 0.79595 0.79523 1.18879 1.20421 1.19032 1.20603 1.04783 1.00339 0.95937 1.19616 0.98759 0.96148 0.98520 0.91405 0.87372 0.89201 0.90756 0.93040 0.92593 0.88773 0.86106 0.90921 0.88178 0.88494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.19 -1.98 20.57 60.35 1.24 -0.73 16 2 N 0.28 2.84 10.23 60.35 0.62 3.46 16 3 N -0.38 -3.79 11.31 -10.61 -0.12 -3.91 16 4 C 0.08 0.67 6.57 -4.04 -0.03 0.64 16 5 C -0.12 -1.31 5.91 -26.73 -0.16 -1.47 16 6 C 0.07 1.02 4.73 37.16 0.18 1.19 16 7 O -0.33 -6.39 10.12 -18.73 -0.19 -6.58 16 8 C -0.01 -0.26 6.71 -38.78 -0.26 -0.52 16 9 C -0.17 -3.95 8.96 -39.83 -0.36 -4.31 16 10 C -0.14 -3.44 8.64 -39.25 -0.34 -3.78 16 11 C 0.09 2.32 5.57 -106.80 -0.60 1.72 16 12 C -0.46 -12.14 9.04 -37.83 -0.34 -12.48 16 13 H 0.08 1.93 7.91 -52.49 -0.41 1.52 16 14 C 0.07 1.86 5.13 -17.34 -0.09 1.77 16 15 N -0.80 -20.41 10.96 55.54 0.61 -19.80 16 16 Si 0.91 18.44 29.60 -169.99 -5.03 13.41 16 17 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 18 H -0.28 -5.53 7.11 56.52 0.40 -5.12 16 19 H -0.27 -5.34 7.11 56.52 0.40 -4.93 16 20 C -0.20 -4.79 9.74 -39.25 -0.38 -5.18 16 21 C -0.11 -2.56 9.92 -39.83 -0.40 -2.95 16 22 H 0.07 0.54 8.05 -51.93 -0.42 0.12 16 23 H 0.11 0.77 8.14 -51.92 -0.42 0.35 16 24 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 26 H 0.05 0.73 7.66 -51.92 -0.40 0.34 16 27 H 0.06 0.76 7.64 -51.93 -0.40 0.36 16 28 H 0.09 1.87 6.27 -52.48 -0.33 1.54 16 29 H 0.12 3.16 6.16 -52.49 -0.32 2.83 16 30 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 31 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16 32 H 0.10 2.00 8.06 -52.49 -0.42 1.57 16 LS Contribution 287.57 15.07 4.33 4.33 Total: -1.00 -27.67 287.57 -4.84 -32.50 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -3.53 Total: 2.68 kcal Atomic # 6 Polarization: -22.58 SS G_CDS: -2.77 Total: -25.35 kcal Atomic # 7 Polarization: -23.34 SS G_CDS: 2.35 Total: -20.99 kcal Atomic # 8 Polarization: -6.39 SS G_CDS: -0.19 Total: -6.58 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -5.03 Total: 13.41 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -27.67 -4.84 -32.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042416236.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.139 kcal (2) G-P(sol) polarization free energy of solvation -27.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds