Wall clock time and date at job start Mon Mar 30 2020 05:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 N 1.12404 * 1 3 3 N 1.12397 * 179.97438 * 2 1 4 4 C 1.46496 * 120.00131 * 92.08228 * 3 2 1 5 5 C 1.53008 * 109.47182 * 119.99788 * 4 3 2 6 6 C 1.53004 * 109.47083 * 179.97438 * 5 4 3 7 7 O 1.42897 * 109.46866 * 179.97438 * 6 5 4 8 8 C 1.35676 * 116.99687 * 180.02562 * 7 6 5 9 9 C 1.39308 * 119.82044 * 359.72874 * 8 7 6 10 10 C 1.36437 * 120.18863 * 179.75644 * 9 8 7 11 11 C 1.40836 * 119.80745 * 0.52106 * 10 9 8 12 12 C 1.41216 * 120.17949 * 179.71927 * 11 10 9 13 13 H 1.08000 * 119.99881 * 204.56305 * 12 11 10 14 14 C 1.39893 * 119.99776 * 24.56420 * 12 11 10 15 15 N 1.30880 * 120.00328 * 17.92398 * 14 12 11 16 16 Si 1.86801 * 119.99652 * 197.92340 * 14 12 11 17 17 H 1.48505 * 109.47066 * 60.00333 * 16 14 12 18 18 H 1.48505 * 109.47144 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47265 * 300.00277 * 16 14 12 20 20 C 1.40836 * 119.64370 * 359.73211 * 11 10 9 21 21 C 1.36437 * 119.81001 * 0.02562 * 20 11 10 22 22 H 1.09003 * 109.47314 * 359.97438 * 4 3 2 23 23 H 1.09009 * 109.47179 * 239.99857 * 4 3 2 24 24 H 1.09004 * 109.46830 * 60.00398 * 5 4 3 25 25 H 1.08996 * 109.47212 * 300.00383 * 5 4 3 26 26 H 1.09008 * 109.46389 * 60.00263 * 6 5 4 27 27 H 1.08996 * 109.47686 * 300.00432 * 6 5 4 28 28 H 1.08007 * 119.90887 * 0.02562 * 9 8 7 29 29 H 1.08001 * 120.09804 * 180.25497 * 10 9 8 30 30 H 0.96998 * 119.99635 * 180.02562 * 15 14 12 31 31 H 1.08001 * 120.09637 * 179.97438 * 20 11 10 32 32 H 1.07997 * 119.91034 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 7 1.1240 0.0000 0.0000 3 7 2.2480 0.0005 0.0000 4 6 2.9805 0.0469 -1.2678 5 6 3.8596 1.2988 -1.3035 6 6 4.6251 1.3469 -2.6274 7 8 5.4456 2.5163 -2.6608 8 6 6.1950 2.7112 -3.7749 9 6 6.1431 1.7862 -4.8153 10 6 6.8897 1.9773 -5.9411 11 6 7.7229 3.1081 -6.0451 12 6 8.5035 3.3105 -7.2043 13 1 9.4023 3.9071 -7.1526 14 6 8.1125 2.7385 -8.4196 15 7 6.8818 2.3235 -8.5816 16 14 9.3469 2.5668 -9.8110 17 1 10.4817 1.7195 -9.3643 18 1 8.6882 1.9339 -10.9819 19 1 9.8524 3.9099 -10.1928 20 6 7.7735 4.0357 -4.9865 21 6 7.0167 3.8323 -3.8697 22 1 2.2722 0.0763 -2.0959 23 1 3.6076 -0.8401 -1.3579 24 1 4.5679 1.2689 -0.4755 25 1 3.2325 2.1857 -1.2134 26 1 3.9169 1.3765 -3.4555 27 1 5.2521 0.4599 -2.7170 28 1 5.5068 0.9175 -4.7323 29 1 6.8453 1.2614 -6.7485 30 1 6.6109 1.9265 -9.4242 31 1 8.4102 4.9051 -5.0583 32 1 7.0546 4.5423 -3.0568 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042416236.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:43 Heat of formation + Delta-G solvation = 58.805327 kcal Electronic energy + Delta-G solvation = -16330.389047 eV Core-core repulsion = 13486.000164 eV Total energy + Delta-G solvation = -2844.388884 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.69487 -40.52312 -38.35942 -37.60348 -35.33002 -34.11202 -31.52249 -30.99071 -28.10292 -26.47857 -23.84795 -22.75584 -21.86003 -20.14437 -19.25756 -19.06620 -18.87501 -18.26770 -17.16584 -17.09347 -16.58923 -16.05584 -15.73002 -15.00148 -14.81176 -14.23535 -14.01274 -13.78304 -13.48937 -13.30044 -12.82266 -12.76937 -12.48046 -12.39173 -12.07861 -11.66146 -11.44263 -11.20685 -11.12291 -10.84406 -9.98361 -9.55091 -8.90092 -8.59522 -6.21749 0.29815 0.95483 1.06205 1.35308 1.40400 1.50713 1.55253 2.06775 2.23373 2.65394 2.73482 3.71334 3.79176 3.94608 4.08282 4.21184 4.30131 4.42121 4.43292 4.53797 4.67622 4.90303 4.99396 5.02353 5.16153 5.18816 5.38204 5.54719 5.67821 5.98799 6.07505 6.25338 6.57377 6.80730 6.96213 7.11621 8.37000 8.52445 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.045486 B = 0.003589 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.421157 B = 7799.631550 C = 8256.091822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.197 5.197 2 N 0.281 4.719 3 N -0.380 5.380 4 C 0.078 3.922 5 C -0.107 4.107 6 C 0.060 3.940 7 O -0.336 6.336 8 C 0.000 4.000 9 C -0.175 4.175 10 C -0.156 4.156 11 C 0.054 3.946 12 C -0.501 4.501 13 H 0.075 0.925 14 C 0.035 3.965 15 N -0.831 5.831 16 Si 0.981 3.019 17 H -0.261 1.261 18 H -0.269 1.269 19 H -0.261 1.261 20 C -0.207 4.207 21 C -0.122 4.122 22 H 0.080 0.920 23 H 0.131 0.869 24 H 0.091 0.909 25 H 0.068 0.932 26 H 0.056 0.944 27 H 0.069 0.931 28 H 0.123 0.877 29 H 0.107 0.893 30 H 0.287 0.713 31 H 0.108 0.892 32 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.915 -5.795 8.496 11.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.190 5.190 2 N 0.282 4.718 3 N -0.296 5.296 4 C -0.049 4.049 5 C -0.146 4.146 6 C -0.016 4.016 7 O -0.252 6.252 8 C -0.044 4.044 9 C -0.193 4.193 10 C -0.176 4.176 11 C 0.052 3.948 12 C -0.531 4.531 13 H 0.093 0.907 14 C -0.179 4.179 15 N -0.458 5.458 16 Si 0.802 3.198 17 H -0.186 1.186 18 H -0.193 1.193 19 H -0.185 1.185 20 C -0.227 4.227 21 C -0.141 4.141 22 H 0.098 0.902 23 H 0.148 0.852 24 H 0.110 0.890 25 H 0.087 0.913 26 H 0.074 0.926 27 H 0.087 0.913 28 H 0.141 0.859 29 H 0.125 0.875 30 H 0.097 0.903 31 H 0.126 0.874 32 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.485 -5.802 8.985 12.508 hybrid contribution 0.453 -0.044 -1.410 1.482 sum -6.032 -5.846 7.575 11.311 Atomic orbital electron populations 1.87704 0.88813 1.43630 0.98809 1.41533 1.01850 1.11452 1.16939 1.70791 0.88375 1.44313 1.26086 1.22536 0.97007 1.01148 0.84194 1.21420 0.98802 0.97483 0.96915 1.22625 0.93172 0.87610 0.98172 1.85771 1.56783 1.44924 1.37719 1.18664 0.99504 0.98409 0.87856 1.20846 1.03500 1.00112 0.94878 1.20934 1.00958 0.98535 0.97168 1.17962 0.92644 0.91046 0.93164 1.19703 1.09357 1.30329 0.93675 0.90668 1.26700 0.96833 0.92224 1.02160 1.69879 1.17816 1.30938 1.27126 0.85277 0.78586 0.79665 0.76319 1.18567 1.19317 1.18519 1.20802 1.05279 1.00425 0.96148 1.19909 0.98486 0.96978 0.98703 0.90208 0.85150 0.89020 0.91292 0.92616 0.91281 0.85936 0.87489 0.90253 0.87356 0.86251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.20 -3.80 20.57 37.02 0.76 -3.04 16 2 N 0.28 5.19 10.23 37.02 0.38 5.57 16 3 N -0.38 -6.79 11.31 -187.47 -2.12 -8.91 16 4 C 0.08 1.15 6.57 86.38 0.57 1.72 16 5 C -0.11 -2.10 5.91 30.60 0.18 -1.91 16 6 C 0.06 1.59 4.73 71.98 0.34 1.93 16 7 O -0.34 -12.40 10.12 -89.94 -0.91 -13.31 16 8 C 0.00 -0.02 6.71 22.79 0.15 0.13 16 9 C -0.17 -7.83 8.96 22.11 0.20 -7.63 16 10 C -0.16 -8.09 8.64 22.48 0.19 -7.89 16 11 C 0.05 2.90 5.57 -21.28 -0.12 2.79 16 12 C -0.50 -26.90 9.04 23.40 0.21 -26.69 16 13 H 0.08 3.89 7.91 -2.91 -0.02 3.86 16 14 C 0.03 1.74 5.13 85.24 0.44 2.18 16 15 N -0.83 -43.04 10.96 21.82 0.24 -42.80 16 16 Si 0.98 37.89 29.60 68.60 2.03 39.92 16 17 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 18 H -0.27 -9.82 7.11 99.48 0.71 -9.11 16 19 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 20 C -0.21 -10.17 9.74 22.48 0.22 -9.95 16 21 C -0.12 -5.50 9.92 22.11 0.22 -5.28 16 22 H 0.08 1.03 8.05 -2.39 -0.02 1.01 16 23 H 0.13 1.39 8.14 -2.38 -0.02 1.37 16 24 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.06 1.44 7.66 -2.38 -0.02 1.42 16 27 H 0.07 1.66 7.64 -2.39 -0.02 1.65 16 28 H 0.12 4.64 6.27 -2.91 -0.02 4.62 16 29 H 0.11 5.74 6.16 -2.91 -0.02 5.72 16 30 H 0.29 13.46 8.30 -92.71 -0.77 12.69 16 31 H 0.11 4.96 8.06 -2.91 -0.02 4.94 16 32 H 0.12 4.74 8.06 -2.91 -0.02 4.71 16 Total: -1.00 -59.49 287.57 4.11 -55.38 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: 1.13 Total: 17.82 kcal Atomic # 6 Polarization: -53.22 SS G_CDS: 2.60 Total: -50.62 kcal Atomic # 7 Polarization: -48.45 SS G_CDS: -0.74 Total: -49.19 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: -0.91 Total: -13.31 kcal Atomic # 14 Polarization: 37.89 SS G_CDS: 2.03 Total: 39.92 kcal Total: -59.49 4.11 -55.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042416236.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.183 kcal (2) G-P(sol) polarization free energy of solvation -59.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds