Wall clock time and date at job start Mon Mar 30 2020 06:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00155 * 2 1 4 4 H 1.48496 * 109.47338 * 179.72330 * 3 2 1 5 5 H 1.48501 * 109.47107 * 299.72418 * 3 2 1 6 6 H 1.48504 * 109.46924 * 59.72007 * 3 2 1 7 7 C 1.37875 * 119.99946 * 179.72191 * 2 1 3 8 8 H 1.07997 * 120.00438 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00153 * 0.02562 * 7 2 1 10 10 N 1.46891 * 109.47264 * 174.49544 * 9 7 2 11 11 C 1.39678 * 111.00041 * 162.70235 * 10 9 7 12 12 C 1.38927 * 120.07493 * 63.95124 * 11 10 9 13 13 C 1.38084 * 119.92653 * 179.97438 * 12 11 10 14 14 C 1.38313 * 120.07259 * 0.02691 * 13 12 11 15 15 C 1.38261 * 120.14983 * 359.96912 * 14 13 12 16 16 C 1.38130 * 120.07505 * 359.75551 * 15 14 13 17 17 C 1.50707 * 120.03806 * 180.27246 * 16 15 14 18 18 O 1.42894 * 109.47083 * 0.25112 * 17 16 15 19 19 C 1.46894 * 110.99959 * 286.65270 * 10 9 7 20 20 C 1.53010 * 117.50046 * 142.49303 * 19 10 9 21 21 C 1.53000 * 59.99921 * 252.50939 * 20 19 10 22 22 H 0.97000 * 119.99892 * 0.28127 * 1 2 3 23 23 H 1.09007 * 109.46691 * 294.49573 * 9 7 2 24 24 H 1.09002 * 109.46737 * 54.49120 * 9 7 2 25 25 H 1.07998 * 120.03952 * 359.97438 * 12 11 10 26 26 H 1.07994 * 119.96445 * 179.97438 * 13 12 11 27 27 H 1.08003 * 119.92261 * 179.97438 * 14 13 12 28 28 H 1.08005 * 119.96608 * 180.02562 * 15 14 13 29 29 H 1.08998 * 109.46723 * 120.25559 * 17 16 15 30 30 H 1.09001 * 109.46876 * 240.25063 * 17 16 15 31 31 H 0.96701 * 113.99984 * 180.02562 * 18 17 16 32 32 H 1.09003 * 115.55467 * 288.19758 * 19 10 9 33 33 H 1.09000 * 117.49496 * 0.02562 * 20 19 10 34 34 H 1.08998 * 117.50042 * 145.01823 * 20 19 10 35 35 H 1.08999 * 117.49944 * 252.50879 * 21 20 19 36 36 H 1.08999 * 117.49602 * 107.48897 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0068 5 1 1.8955 2.3935 -1.2159 6 1 1.8853 2.3993 1.2091 7 6 2.0045 -1.1940 0.0058 8 1 3.0845 -1.1941 0.0062 9 6 1.2510 -2.4992 0.0115 10 7 2.2001 -3.6131 -0.1158 11 6 1.6109 -4.8193 0.2701 12 6 0.5374 -5.3309 -0.4482 13 6 -0.0424 -6.5239 -0.0644 14 6 0.4440 -7.2091 1.0342 15 6 1.5123 -6.7028 1.7512 16 6 2.1006 -5.5128 1.3693 17 6 3.2689 -4.9649 2.1478 18 8 3.5829 -5.8521 3.2230 19 6 2.7297 -3.6997 -1.4832 20 6 4.2009 -4.0868 -1.6478 21 6 3.7544 -2.6474 -1.9119 22 1 -0.4850 0.8400 -0.0041 23 1 0.7000 -2.5964 0.9470 24 1 0.5528 -2.5192 -0.8252 25 1 0.1567 -4.7962 -1.3059 26 1 -0.8772 -6.9219 -0.6221 27 1 -0.0116 -8.1417 1.3325 28 1 1.8900 -7.2405 2.6083 29 1 4.1325 -4.8718 1.4894 30 1 3.0105 -3.9848 2.5490 31 1 4.3268 -5.5615 3.7682 32 1 2.0280 -4.0555 -2.2376 33 1 4.7755 -4.2776 -0.7414 34 1 4.4671 -4.6975 -2.5105 35 1 3.7269 -2.3111 -2.9483 36 1 4.0355 -1.8909 -1.1793 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042547584.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:05 Heat of formation + Delta-G solvation = 12.656549 kcal Electronic energy + Delta-G solvation = -18112.559649 eV Core-core repulsion = 15369.709947 eV Total energy + Delta-G solvation = -2742.849701 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.56362 -37.15911 -36.22048 -33.73917 -32.51459 -31.09149 -29.11236 -26.63237 -25.25528 -22.58635 -22.16425 -21.62316 -20.62681 -19.44670 -17.22409 -16.77145 -16.10673 -15.17779 -14.89411 -14.75919 -14.39987 -14.22005 -13.64532 -13.41430 -13.30243 -12.63398 -12.09225 -11.90695 -11.86314 -11.43826 -11.01253 -10.95521 -10.86757 -10.72250 -10.53176 -10.06462 -9.96232 -9.78475 -9.26295 -9.19544 -8.45752 -8.32472 -7.99600 -7.53194 -6.05338 -4.06301 1.77237 1.83151 3.27962 3.35901 3.39046 4.16527 4.35982 4.49010 4.51527 4.68588 5.29817 5.30534 5.37950 5.47515 5.59085 5.65926 5.77878 5.86011 5.87670 6.00118 6.07020 6.17551 6.25059 6.38175 6.49396 6.62644 6.80723 6.89273 6.91241 7.00646 7.17857 7.32054 7.41888 7.82888 7.87453 8.04955 8.13002 8.55371 8.99814 9.56838 11.05369 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.021754 B = 0.007081 C = 0.006988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.823465 B = 3953.517158 C = 4006.156949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.502 4.502 8 H 0.070 0.930 9 C 0.203 3.797 10 N -0.484 5.484 11 C 0.123 3.877 12 C -0.150 4.150 13 C -0.116 4.116 14 C -0.141 4.141 15 C -0.098 4.098 16 C -0.075 4.075 17 C 0.130 3.870 18 O -0.580 6.580 19 C 0.030 3.970 20 C -0.185 4.185 21 C -0.149 4.149 22 H 0.260 0.740 23 H 0.026 0.974 24 H 0.002 0.998 25 H 0.118 0.882 26 H 0.114 0.886 27 H 0.115 0.885 28 H 0.127 0.873 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.377 0.623 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.226 -10.644 0.485 11.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.540 4.540 8 H 0.088 0.912 9 C 0.080 3.920 10 N -0.206 5.206 11 C 0.029 3.971 12 C -0.170 4.170 13 C -0.134 4.134 14 C -0.159 4.159 15 C -0.116 4.116 16 C -0.076 4.076 17 C 0.054 3.946 18 O -0.386 6.386 19 C -0.078 4.078 20 C -0.223 4.223 21 C -0.186 4.186 22 H 0.070 0.930 23 H 0.044 0.956 24 H 0.020 0.980 25 H 0.136 0.864 26 H 0.132 0.868 27 H 0.133 0.867 28 H 0.145 0.855 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.224 0.776 32 H 0.092 0.908 33 H 0.109 0.891 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 4.960 -10.715 0.540 11.820 hybrid contribution -0.077 1.194 -0.420 1.269 sum 4.883 -9.521 0.120 10.701 Atomic orbital electron populations 1.69973 1.06045 1.26648 1.51077 1.24985 0.94834 0.99232 0.95588 0.86482 0.80060 0.83617 0.77513 1.19621 1.21129 1.21103 1.21247 0.93629 0.89431 1.49727 0.91206 1.19765 0.89415 0.86368 0.96410 1.59648 1.38243 1.01500 1.21174 1.18766 0.92642 0.91772 0.93910 1.21693 0.97356 0.96825 1.01148 1.20963 0.99720 0.95405 0.97362 1.21023 0.98029 1.00222 0.96665 1.20846 0.95673 0.95510 0.99585 1.19561 0.97317 0.94996 0.95768 1.20697 0.95126 0.91687 0.87138 1.86366 1.55586 1.51407 1.45195 1.22058 0.90750 1.04949 0.90066 1.23021 0.97748 0.99363 1.02118 1.23073 1.01683 0.92199 1.01621 0.92988 0.95574 0.97982 0.86392 0.86802 0.86715 0.85468 0.92193 0.91439 0.77632 0.90834 0.89126 0.90006 0.89850 0.86720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.26 13.29 55.43 0.74 -25.52 16 2 C 0.05 1.51 5.46 -17.82 -0.10 1.41 16 3 Si 0.90 21.12 29.54 -169.99 -5.02 16.09 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.50 -13.44 8.05 -34.44 -0.28 -13.71 16 8 H 0.07 1.82 5.47 -52.49 -0.29 1.53 16 9 C 0.20 5.18 4.31 -4.98 -0.02 5.16 16 10 N -0.48 -10.26 3.92 -164.92 -0.65 -10.91 16 11 C 0.12 2.44 4.60 -83.79 -0.39 2.05 16 12 C -0.15 -2.77 8.70 -39.38 -0.34 -3.11 16 13 C -0.12 -1.84 10.04 -39.61 -0.40 -2.24 16 14 C -0.14 -2.14 10.04 -39.55 -0.40 -2.54 16 15 C -0.10 -1.61 9.37 -39.61 -0.37 -1.98 16 16 C -0.08 -1.37 5.90 -104.42 -0.62 -1.99 16 17 C 0.13 2.14 6.85 36.01 0.25 2.39 16 18 O -0.58 -8.18 12.14 -35.23 -0.43 -8.60 16 19 C 0.03 0.57 4.57 -67.71 -0.31 0.26 16 20 C -0.18 -3.02 10.46 -26.73 -0.28 -3.30 16 21 C -0.15 -2.73 9.38 -26.73 -0.25 -2.98 16 22 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 23 H 0.03 0.73 7.95 -51.93 -0.41 0.32 16 24 H 0.00 0.06 7.87 -51.93 -0.41 -0.35 16 25 H 0.12 2.20 7.47 -52.49 -0.39 1.80 16 26 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 27 H 0.11 1.40 8.06 -52.48 -0.42 0.98 16 28 H 0.13 1.96 7.00 -52.48 -0.37 1.59 16 29 H 0.06 0.96 8.13 -51.93 -0.42 0.54 16 30 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.38 3.46 9.12 45.56 0.42 3.88 16 32 H 0.07 1.42 7.36 -51.93 -0.38 1.03 16 33 H 0.09 1.47 8.13 -51.93 -0.42 1.05 16 34 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.11 2.33 5.65 -51.93 -0.29 2.04 16 LS Contribution 300.94 15.07 4.54 4.54 Total: -1.00 -30.00 300.94 -8.54 -38.54 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -4.22 Total: 6.43 kcal Atomic # 6 Polarization: -17.07 SS G_CDS: -3.50 Total: -20.57 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: 0.09 Total: -36.43 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: -0.43 Total: -8.60 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.00 -8.54 -38.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042547584.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.200 kcal (2) G-P(sol) polarization free energy of solvation -30.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds