Wall clock time and date at job start Mon Mar 30 2020 06:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00155 * 2 1 4 4 H 1.48496 * 109.47338 * 179.72330 * 3 2 1 5 5 H 1.48501 * 109.47107 * 299.72418 * 3 2 1 6 6 H 1.48504 * 109.46924 * 59.72007 * 3 2 1 7 7 C 1.37875 * 119.99946 * 179.72191 * 2 1 3 8 8 H 1.07997 * 120.00438 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00153 * 0.02562 * 7 2 1 10 10 N 1.46891 * 109.47264 * 174.49544 * 9 7 2 11 11 C 1.39678 * 111.00041 * 162.70235 * 10 9 7 12 12 C 1.38927 * 120.07493 * 63.95124 * 11 10 9 13 13 C 1.38084 * 119.92653 * 179.97438 * 12 11 10 14 14 C 1.38313 * 120.07259 * 0.02691 * 13 12 11 15 15 C 1.38261 * 120.14983 * 359.96912 * 14 13 12 16 16 C 1.38130 * 120.07505 * 359.75551 * 15 14 13 17 17 C 1.50707 * 120.03806 * 180.27246 * 16 15 14 18 18 O 1.42894 * 109.47083 * 0.25112 * 17 16 15 19 19 C 1.46894 * 110.99959 * 286.65270 * 10 9 7 20 20 C 1.53010 * 117.50046 * 142.49303 * 19 10 9 21 21 C 1.53000 * 59.99921 * 252.50939 * 20 19 10 22 22 H 0.97000 * 119.99892 * 0.28127 * 1 2 3 23 23 H 1.09007 * 109.46691 * 294.49573 * 9 7 2 24 24 H 1.09002 * 109.46737 * 54.49120 * 9 7 2 25 25 H 1.07998 * 120.03952 * 359.97438 * 12 11 10 26 26 H 1.07994 * 119.96445 * 179.97438 * 13 12 11 27 27 H 1.08003 * 119.92261 * 179.97438 * 14 13 12 28 28 H 1.08005 * 119.96608 * 180.02562 * 15 14 13 29 29 H 1.08998 * 109.46723 * 120.25559 * 17 16 15 30 30 H 1.09001 * 109.46876 * 240.25063 * 17 16 15 31 31 H 0.96701 * 113.99984 * 180.02562 * 18 17 16 32 32 H 1.09003 * 115.55467 * 288.19758 * 19 10 9 33 33 H 1.09000 * 117.49496 * 0.02562 * 20 19 10 34 34 H 1.08998 * 117.50042 * 145.01823 * 20 19 10 35 35 H 1.08999 * 117.49944 * 252.50879 * 21 20 19 36 36 H 1.08999 * 117.49602 * 107.48897 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0068 5 1 1.8955 2.3935 -1.2159 6 1 1.8853 2.3993 1.2091 7 6 2.0045 -1.1940 0.0058 8 1 3.0845 -1.1941 0.0062 9 6 1.2510 -2.4992 0.0115 10 7 2.2001 -3.6131 -0.1158 11 6 1.6109 -4.8193 0.2701 12 6 0.5374 -5.3309 -0.4482 13 6 -0.0424 -6.5239 -0.0644 14 6 0.4440 -7.2091 1.0342 15 6 1.5123 -6.7028 1.7512 16 6 2.1006 -5.5128 1.3693 17 6 3.2689 -4.9649 2.1478 18 8 3.5829 -5.8521 3.2230 19 6 2.7297 -3.6997 -1.4832 20 6 4.2009 -4.0868 -1.6478 21 6 3.7544 -2.6474 -1.9119 22 1 -0.4850 0.8400 -0.0041 23 1 0.7000 -2.5964 0.9470 24 1 0.5528 -2.5192 -0.8252 25 1 0.1567 -4.7962 -1.3059 26 1 -0.8772 -6.9219 -0.6221 27 1 -0.0116 -8.1417 1.3325 28 1 1.8900 -7.2405 2.6083 29 1 4.1325 -4.8718 1.4894 30 1 3.0105 -3.9848 2.5490 31 1 4.3268 -5.5615 3.7682 32 1 2.0280 -4.0555 -2.2376 33 1 4.7755 -4.2776 -0.7414 34 1 4.4671 -4.6975 -2.5105 35 1 3.7269 -2.3111 -2.9483 36 1 4.0355 -1.8909 -1.1793 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042547584.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:04 Heat of formation + Delta-G solvation = -6.699744 kcal Electronic energy + Delta-G solvation = -18113.399001 eV Core-core repulsion = 15369.709947 eV Total energy + Delta-G solvation = -2743.689053 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.99094 -38.59963 -37.41932 -35.41895 -34.42155 -32.40568 -30.73418 -28.44331 -26.60581 -24.46916 -23.66948 -23.03970 -21.96620 -20.97052 -18.88148 -18.13762 -17.68364 -16.78344 -16.58438 -16.18511 -15.87972 -15.62879 -15.16232 -14.78931 -14.65009 -14.38001 -13.87391 -13.60599 -13.24435 -13.01007 -12.76850 -12.66056 -12.40722 -12.16835 -11.95242 -11.82970 -11.35924 -11.17197 -11.14520 -10.77553 -10.57267 -9.68281 -9.38482 -9.22987 -8.17809 -6.26401 0.42376 0.47629 1.41139 1.42064 1.54840 2.40390 2.82583 2.98664 3.13918 3.16766 3.35481 4.00990 4.11826 4.16942 4.22681 4.24154 4.39034 4.49559 4.56585 4.66504 4.73005 4.81274 4.87202 4.96107 5.07914 5.17475 5.20395 5.27838 5.43139 5.52803 5.60146 5.70321 5.77874 6.02954 6.13131 6.26439 6.79981 6.88551 6.93758 7.41877 8.93652 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.021754 B = 0.007081 C = 0.006988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.823465 B = 3953.517158 C = 4006.156949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.001 4.001 3 Si 0.965 3.035 4 H -0.258 1.258 5 H -0.281 1.281 6 H -0.283 1.283 7 C -0.506 4.506 8 H 0.077 0.923 9 C 0.225 3.775 10 N -0.478 5.478 11 C 0.090 3.910 12 C -0.168 4.168 13 C -0.114 4.114 14 C -0.130 4.130 15 C -0.100 4.100 16 C -0.092 4.092 17 C 0.142 3.858 18 O -0.581 6.581 19 C 0.000 4.000 20 C -0.148 4.148 21 C -0.156 4.156 22 H 0.262 0.738 23 H -0.011 1.011 24 H -0.032 1.032 25 H 0.103 0.897 26 H 0.143 0.857 27 H 0.154 0.846 28 H 0.142 0.858 29 H 0.064 0.936 30 H 0.045 0.955 31 H 0.399 0.601 32 H 0.069 0.931 33 H 0.094 0.906 34 H 0.112 0.888 35 H 0.098 0.902 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.619 -12.030 0.625 13.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.198 4.198 3 Si 0.790 3.210 4 H -0.181 1.181 5 H -0.207 1.207 6 H -0.209 1.209 7 C -0.544 4.544 8 H 0.095 0.905 9 C 0.101 3.899 10 N -0.199 5.199 11 C -0.004 4.004 12 C -0.188 4.188 13 C -0.132 4.132 14 C -0.147 4.147 15 C -0.118 4.118 16 C -0.093 4.093 17 C 0.064 3.936 18 O -0.390 6.390 19 C -0.108 4.108 20 C -0.185 4.185 21 C -0.193 4.193 22 H 0.070 0.930 23 H 0.007 0.993 24 H -0.014 1.014 25 H 0.121 0.879 26 H 0.161 0.839 27 H 0.172 0.828 28 H 0.160 0.840 29 H 0.082 0.918 30 H 0.063 0.937 31 H 0.249 0.751 32 H 0.086 0.914 33 H 0.112 0.888 34 H 0.130 0.870 35 H 0.116 0.884 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.390 -12.124 0.691 13.722 hybrid contribution -0.542 1.491 -0.430 1.643 sum 5.848 -10.633 0.261 12.138 Atomic orbital electron populations 1.70118 1.07849 1.27595 1.52392 1.25899 0.95616 1.03084 0.95189 0.85384 0.79324 0.78831 0.77417 1.18117 1.20714 1.20930 1.21558 0.94015 0.90038 1.48833 0.90528 1.19300 0.89340 0.88305 0.92996 1.59510 1.36773 1.01205 1.22412 1.18944 0.94163 0.91793 0.95467 1.21726 0.97829 0.98174 1.01098 1.21290 1.00019 0.94200 0.97716 1.21461 0.96889 1.01043 0.95339 1.21111 0.95851 0.94866 1.00014 1.19816 0.98229 0.95827 0.95439 1.20423 0.94738 0.90843 0.87579 1.86308 1.56967 1.50815 1.44883 1.22193 0.92296 1.07122 0.89160 1.23061 0.94516 0.97761 1.03168 1.23042 1.01708 0.92751 1.01822 0.92951 0.99325 1.01406 0.87905 0.83904 0.82835 0.83987 0.91844 0.93680 0.75075 0.91377 0.88766 0.87002 0.88358 0.88850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.80 13.29 21.45 0.28 -56.51 16 2 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 3 Si 0.97 43.81 29.54 68.60 2.03 45.84 16 4 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 6 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 7 C -0.51 -27.95 8.05 25.60 0.21 -27.74 16 8 H 0.08 4.06 5.47 -2.91 -0.02 4.04 16 9 C 0.22 12.14 4.31 85.56 0.37 12.51 16 10 N -0.48 -20.99 3.92 -675.68 -2.65 -23.64 16 11 C 0.09 3.65 4.60 38.21 0.18 3.83 16 12 C -0.17 -6.34 8.70 22.40 0.19 -6.15 16 13 C -0.11 -3.44 10.04 22.25 0.22 -3.21 16 14 C -0.13 -3.56 10.04 22.29 0.22 -3.33 16 15 C -0.10 -3.10 9.37 22.25 0.21 -2.89 16 16 C -0.09 -3.33 5.90 -19.73 -0.12 -3.44 16 17 C 0.14 4.60 6.85 71.24 0.49 5.09 16 18 O -0.58 -15.32 12.14 -148.98 -1.81 -17.13 16 19 C 0.00 0.00 4.57 44.92 0.21 0.20 16 20 C -0.15 -4.57 10.46 30.60 0.32 -4.25 16 21 C -0.16 -5.65 9.38 30.60 0.29 -5.37 16 22 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 23 H -0.01 -0.68 7.95 -2.38 -0.02 -0.70 16 24 H -0.03 -1.89 7.87 -2.39 -0.02 -1.91 16 25 H 0.10 4.07 7.47 -2.91 -0.02 4.05 16 26 H 0.14 3.42 8.06 -2.91 -0.02 3.39 16 27 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 28 H 0.14 3.96 7.00 -2.91 -0.02 3.94 16 29 H 0.06 1.98 8.13 -2.39 -0.02 1.96 16 30 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.40 6.48 9.12 -74.06 -0.68 5.81 16 32 H 0.07 2.71 7.36 -2.39 -0.02 2.69 16 33 H 0.09 2.87 8.13 -2.39 -0.02 2.85 16 34 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 35 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16 36 H 0.09 3.80 5.65 -2.39 -0.01 3.78 16 Total: -1.00 -66.69 300.94 1.51 -65.19 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: 0.40 Total: 20.59 kcal Atomic # 6 Polarization: -37.58 SS G_CDS: 3.25 Total: -34.34 kcal Atomic # 7 Polarization: -77.79 SS G_CDS: -2.36 Total: -80.15 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: -1.81 Total: -17.13 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -66.69 1.51 -65.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042547584.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.488 kcal (2) G-P(sol) polarization free energy of solvation -66.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds