Wall clock time and date at job start Mon Mar 30 2020 05:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.47093 * 2 1 4 4 C 1.35611 * 116.99877 * 180.02562 * 3 2 1 5 5 C 1.41298 * 120.06960 * 90.00187 * 4 3 2 6 6 C 1.41250 * 120.19022 * 0.02562 * 5 4 3 7 7 H 1.07998 * 119.99684 * 25.19725 * 6 5 4 8 8 C 1.39901 * 119.99667 * 205.19286 * 6 5 4 9 9 N 1.30874 * 120.00482 * 17.13033 * 8 6 5 10 10 Si 1.86803 * 119.99602 * 197.12581 * 8 6 5 11 11 H 1.48490 * 109.47285 * 265.19063 * 10 8 6 12 12 H 1.48505 * 109.47166 * 25.19560 * 10 8 6 13 13 H 1.48502 * 109.46608 * 145.18902 * 10 8 6 14 14 C 1.40446 * 119.61666 * 179.74533 * 5 4 3 15 15 C 1.39020 * 119.74913 * 0.24939 * 14 5 4 16 16 C 1.43199 * 119.93932 * 179.97438 * 15 14 5 17 17 N 7.47707 * 162.55255 * 0.75035 * 2 1 3 18 18 C 1.40191 * 120.12520 * 0.02562 * 15 14 5 19 19 C 1.38299 * 120.39193 * 359.97438 * 18 15 14 20 20 O 1.36016 * 119.87426 * 180.02562 * 19 18 15 21 21 C 1.42906 * 116.99924 * 0.02562 * 20 19 18 22 22 H 1.09005 * 109.47169 * 59.99979 * 1 2 3 23 23 H 1.08993 * 109.47336 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47303 * 300.00315 * 1 2 3 25 25 H 1.08996 * 109.47395 * 240.00167 * 2 1 3 26 26 H 1.09000 * 109.47260 * 119.99537 * 2 1 3 27 27 H 0.96996 * 120.00561 * 179.97438 * 9 8 6 28 28 H 1.08006 * 120.12565 * 180.23215 * 14 5 4 29 29 H 1.08001 * 119.80447 * 179.97438 * 18 15 14 30 30 H 1.09005 * 109.47036 * 59.99705 * 21 20 19 31 31 H 1.08997 * 109.47335 * 179.97438 * 21 20 19 32 32 H 1.08999 * 109.46854 * 300.00108 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3508 1.5250 -0.0005 5 6 4.0521 1.6179 -1.2236 6 6 3.3569 1.5269 -2.4498 7 1 2.3107 1.7907 -2.4982 8 6 4.0235 1.0951 -3.6015 9 7 5.1660 0.4650 -3.4989 10 14 3.2827 1.4177 -5.2857 11 1 2.5006 0.2318 -5.7179 12 1 2.3887 2.6014 -5.2148 13 1 4.3702 1.6766 -6.2633 14 6 5.4437 1.8073 -1.2131 15 6 6.1186 1.8963 -0.0010 16 6 7.5375 2.0888 0.0145 17 7 8.6631 2.2417 0.0294 18 6 5.4129 1.7968 1.2063 19 6 4.0425 1.6103 1.2023 20 8 3.3683 1.5157 2.3798 21 6 4.1390 1.6183 3.5788 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 5.6281 0.1653 -4.2973 28 1 5.9875 1.8833 -2.1432 29 1 5.9425 1.8662 2.1449 30 1 4.6418 2.5852 3.6059 31 1 3.4808 1.5271 4.4428 32 1 4.8824 0.8215 3.6021 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044369470.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:21 Heat of formation + Delta-G solvation = -37.678370 kcal Electronic energy + Delta-G solvation = -17602.648179 eV Core-core repulsion = 14721.782697 eV Total energy + Delta-G solvation = -2880.865482 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.31827 -37.26314 -36.61806 -35.27681 -33.63204 -31.09211 -29.66260 -28.71590 -26.76577 -25.39887 -22.71622 -21.62223 -21.13167 -18.78448 -16.86460 -16.52899 -15.97803 -15.58800 -15.08643 -14.87695 -14.14320 -13.92837 -13.28426 -13.22067 -13.03705 -12.92885 -12.22677 -12.16887 -11.96557 -11.65539 -11.50207 -11.31332 -11.12268 -10.91401 -10.79783 -10.65575 -10.37524 -10.02817 -10.00308 -9.36021 -8.70300 -7.72601 -7.18074 -7.00211 -4.64279 1.85619 2.60055 2.96556 2.97503 3.04416 3.41639 3.69800 3.75015 4.06987 4.44546 4.75225 4.87638 5.38115 5.54585 5.61147 5.70107 5.79450 5.86385 5.99792 6.15979 6.27522 6.46889 6.49992 6.60402 6.64972 6.80514 6.93160 7.16692 7.30592 7.57739 7.63022 8.10935 8.17561 8.22843 8.43240 8.55684 8.96994 9.86747 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.015207 B = 0.010626 C = 0.006501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.799298 B = 2634.320116 C = 4305.953633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.059 3.941 3 O -0.312 6.312 4 C -0.037 4.037 5 C 0.117 3.883 6 C -0.426 4.426 7 H 0.094 0.906 8 C 0.072 3.928 9 N -0.780 5.780 10 Si 0.914 3.086 11 H -0.267 1.267 12 H -0.256 1.256 13 H -0.273 1.273 14 C -0.116 4.116 15 C -0.001 4.001 16 C 0.284 3.716 17 N -0.471 5.471 18 C -0.280 4.280 19 C 0.139 3.861 20 O -0.316 6.316 21 C 0.031 3.969 22 H 0.059 0.941 23 H 0.060 0.940 24 H 0.056 0.944 25 H 0.050 0.950 26 H 0.036 0.964 27 H 0.288 0.712 28 H 0.133 0.867 29 H 0.109 0.891 30 H 0.048 0.952 31 H 0.086 0.914 32 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.321 -1.040 3.866 6.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.017 4.017 3 O -0.228 6.228 4 C -0.084 4.084 5 C 0.114 3.886 6 C -0.454 4.454 7 H 0.112 0.888 8 C -0.148 4.148 9 N -0.404 5.404 10 Si 0.738 3.262 11 H -0.192 1.192 12 H -0.179 1.179 13 H -0.198 1.198 14 C -0.138 4.138 15 C -0.005 4.005 16 C -0.030 4.030 17 N -0.148 5.148 18 C -0.303 4.303 19 C 0.094 3.906 20 O -0.230 6.230 21 C -0.065 4.065 22 H 0.078 0.922 23 H 0.079 0.921 24 H 0.075 0.925 25 H 0.068 0.932 26 H 0.054 0.946 27 H 0.099 0.901 28 H 0.150 0.850 29 H 0.127 0.873 30 H 0.067 0.933 31 H 0.105 0.895 32 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.738 -0.824 3.775 5.376 hybrid contribution -0.132 -0.288 -0.585 0.666 sum -3.870 -1.112 3.189 5.137 Atomic orbital electron populations 1.21688 0.95010 1.01091 1.02405 1.22496 0.93847 0.85574 0.99736 1.85976 1.18370 1.24529 1.93973 1.17950 0.83751 1.17691 0.88962 1.17454 0.90817 0.88844 0.91511 1.19612 0.98578 1.36126 0.91111 0.88799 1.26074 0.94361 0.92214 1.02181 1.69797 1.13724 1.24208 1.32660 0.86167 0.79815 0.80290 0.79936 1.19239 1.17909 1.19797 1.21355 0.94645 1.02639 0.95185 1.15676 0.83232 1.06729 0.94878 1.26202 0.93123 0.91968 0.91679 1.81069 1.12530 1.11569 1.09639 1.20095 0.92339 1.21653 0.96166 1.18894 0.89947 0.97425 0.84352 1.86113 1.36036 1.88511 1.12341 1.22862 0.96718 1.00796 0.86110 0.92171 0.92071 0.92536 0.93210 0.94570 0.90112 0.84964 0.87338 0.93324 0.89527 0.93426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 10.28 37.16 0.38 -1.81 16 2 C 0.06 1.12 6.78 37.16 0.25 1.37 16 3 O -0.31 -7.02 9.09 -33.43 -0.30 -7.33 16 4 C -0.04 -0.87 5.77 -38.13 -0.22 -1.09 16 5 C 0.12 2.85 5.57 -106.76 -0.59 2.26 16 6 C -0.43 -10.22 8.71 -37.82 -0.33 -10.55 16 7 H 0.09 2.23 7.64 -52.49 -0.40 1.83 16 8 C 0.07 1.63 5.14 -17.34 -0.09 1.54 16 9 N -0.78 -18.21 10.98 55.55 0.61 -17.60 16 10 Si 0.91 17.09 29.59 -169.99 -5.03 12.06 16 11 H -0.27 -4.94 7.11 56.52 0.40 -4.53 16 12 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 13 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 14 C -0.12 -2.73 8.37 -38.46 -0.32 -3.06 16 15 C 0.00 -0.03 5.73 -106.95 -0.61 -0.64 16 16 C 0.28 6.08 15.31 -22.47 -0.34 5.74 16 17 N -0.47 -10.30 18.54 41.84 0.78 -9.53 16 18 C -0.28 -5.81 8.74 -38.83 -0.34 -6.15 16 19 C 0.14 3.01 6.68 -39.27 -0.26 2.75 16 20 O -0.32 -6.20 10.27 -34.69 -0.36 -6.55 16 21 C 0.03 0.44 9.81 101.05 0.99 1.44 16 22 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 23 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 24 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 26 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.29 6.12 8.30 -40.82 -0.34 5.78 16 28 H 0.13 3.22 6.19 -52.48 -0.33 2.89 16 29 H 0.11 1.99 6.24 -52.49 -0.33 1.66 16 30 H 0.05 0.66 7.65 -51.93 -0.40 0.26 16 31 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.05 0.65 7.65 -51.93 -0.40 0.25 16 LS Contribution 289.20 15.07 4.36 4.36 Total: -1.00 -26.07 289.20 -4.95 -31.02 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -3.52 Total: 1.76 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: -1.49 Total: -8.19 kcal Atomic # 7 Polarization: -28.51 SS G_CDS: 1.39 Total: -27.13 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: -0.66 Total: -13.88 kcal Atomic # 14 Polarization: 17.09 SS G_CDS: -5.03 Total: 12.06 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -26.07 -4.95 -31.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044369470.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.655 kcal (2) G-P(sol) polarization free energy of solvation -26.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds