Wall clock time and date at job start Mon Mar 30 2020 05:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.47093 * 2 1 4 4 C 1.35611 * 116.99877 * 180.02562 * 3 2 1 5 5 C 1.41298 * 120.06960 * 90.00187 * 4 3 2 6 6 C 1.41250 * 120.19022 * 0.02562 * 5 4 3 7 7 H 1.07998 * 119.99684 * 25.19725 * 6 5 4 8 8 C 1.39901 * 119.99667 * 205.19286 * 6 5 4 9 9 N 1.30874 * 120.00482 * 17.13033 * 8 6 5 10 10 Si 1.86803 * 119.99602 * 197.12581 * 8 6 5 11 11 H 1.48490 * 109.47285 * 265.19063 * 10 8 6 12 12 H 1.48505 * 109.47166 * 25.19560 * 10 8 6 13 13 H 1.48502 * 109.46608 * 145.18902 * 10 8 6 14 14 C 1.40446 * 119.61666 * 179.74533 * 5 4 3 15 15 C 1.39020 * 119.74913 * 0.24939 * 14 5 4 16 16 C 1.43199 * 119.93932 * 179.97438 * 15 14 5 17 17 N 7.47707 * 162.55255 * 0.75035 * 2 1 3 18 18 C 1.40191 * 120.12520 * 0.02562 * 15 14 5 19 19 C 1.38299 * 120.39193 * 359.97438 * 18 15 14 20 20 O 1.36016 * 119.87426 * 180.02562 * 19 18 15 21 21 C 1.42906 * 116.99924 * 0.02562 * 20 19 18 22 22 H 1.09005 * 109.47169 * 59.99979 * 1 2 3 23 23 H 1.08993 * 109.47336 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47303 * 300.00315 * 1 2 3 25 25 H 1.08996 * 109.47395 * 240.00167 * 2 1 3 26 26 H 1.09000 * 109.47260 * 119.99537 * 2 1 3 27 27 H 0.96996 * 120.00561 * 179.97438 * 9 8 6 28 28 H 1.08006 * 120.12565 * 180.23215 * 14 5 4 29 29 H 1.08001 * 119.80447 * 179.97438 * 18 15 14 30 30 H 1.09005 * 109.47036 * 59.99705 * 21 20 19 31 31 H 1.08997 * 109.47335 * 179.97438 * 21 20 19 32 32 H 1.08999 * 109.46854 * 300.00108 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3508 1.5250 -0.0005 5 6 4.0521 1.6179 -1.2236 6 6 3.3569 1.5269 -2.4498 7 1 2.3107 1.7907 -2.4982 8 6 4.0235 1.0951 -3.6015 9 7 5.1660 0.4650 -3.4989 10 14 3.2827 1.4177 -5.2857 11 1 2.5006 0.2318 -5.7179 12 1 2.3887 2.6014 -5.2148 13 1 4.3702 1.6766 -6.2633 14 6 5.4437 1.8073 -1.2131 15 6 6.1186 1.8963 -0.0010 16 6 7.5375 2.0888 0.0145 17 7 8.6631 2.2417 0.0294 18 6 5.4129 1.7968 1.2063 19 6 4.0425 1.6103 1.2023 20 8 3.3683 1.5157 2.3798 21 6 4.1390 1.6183 3.5788 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 5.6281 0.1653 -4.2973 28 1 5.9875 1.8833 -2.1432 29 1 5.9425 1.8662 2.1449 30 1 4.6418 2.5852 3.6059 31 1 3.4808 1.5271 4.4428 32 1 4.8824 0.8215 3.6021 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044369470.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:20 Heat of formation + Delta-G solvation = -50.925291 kcal Electronic energy + Delta-G solvation = -17603.222608 eV Core-core repulsion = 14721.782697 eV Total energy + Delta-G solvation = -2881.439911 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.95645 -38.83688 -38.33023 -37.00159 -35.34017 -32.58256 -31.35701 -30.29340 -28.16375 -27.07479 -24.30850 -23.20645 -22.79604 -20.43335 -18.55532 -18.28324 -17.59276 -17.16502 -16.54976 -16.46074 -15.65763 -15.47851 -14.86004 -14.83487 -14.71928 -14.53680 -13.83090 -13.77931 -13.42668 -13.12906 -13.02067 -12.77818 -12.62237 -12.38406 -12.28463 -12.16962 -11.92736 -11.65229 -11.62122 -11.03662 -10.36989 -9.48174 -8.86896 -8.69542 -6.43785 0.10603 0.90298 1.42199 1.46759 1.57325 1.67503 1.99944 2.19610 2.63286 2.72277 3.07800 3.17790 3.66438 4.29939 4.38364 4.44954 4.50782 4.53990 4.70288 4.75582 4.78684 4.82243 4.89904 5.14019 5.17448 5.22132 5.37114 5.43723 5.61236 5.81252 5.88147 6.34616 6.48195 6.57067 6.67019 6.81325 7.26821 8.19867 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.015207 B = 0.010626 C = 0.006501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.799298 B = 2634.320116 C = 4305.953633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.056 3.944 3 O -0.327 6.327 4 C -0.053 4.053 5 C 0.095 3.905 6 C -0.454 4.454 7 H 0.085 0.915 8 C 0.040 3.960 9 N -0.809 5.809 10 Si 0.980 3.020 11 H -0.260 1.260 12 H -0.257 1.257 13 H -0.266 1.266 14 C -0.135 4.135 15 C 0.000 4.000 16 C 0.293 3.707 17 N -0.475 5.475 18 C -0.268 4.268 19 C 0.137 3.863 20 O -0.330 6.330 21 C 0.020 3.980 22 H 0.058 0.942 23 H 0.091 0.909 24 H 0.063 0.937 25 H 0.032 0.968 26 H 0.037 0.963 27 H 0.295 0.705 28 H 0.119 0.881 29 H 0.137 0.863 30 H 0.058 0.942 31 H 0.120 0.880 32 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.887 -1.199 4.719 7.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.019 4.019 3 O -0.244 6.244 4 C -0.100 4.100 5 C 0.092 3.908 6 C -0.481 4.481 7 H 0.103 0.897 8 C -0.178 4.178 9 N -0.433 5.433 10 Si 0.800 3.200 11 H -0.185 1.185 12 H -0.180 1.180 13 H -0.191 1.191 14 C -0.158 4.158 15 C -0.004 4.004 16 C -0.021 4.021 17 N -0.152 5.152 18 C -0.290 4.290 19 C 0.091 3.909 20 O -0.244 6.244 21 C -0.075 4.075 22 H 0.077 0.923 23 H 0.109 0.891 24 H 0.082 0.918 25 H 0.050 0.950 26 H 0.055 0.945 27 H 0.106 0.894 28 H 0.137 0.863 29 H 0.155 0.845 30 H 0.076 0.924 31 H 0.138 0.862 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.300 -0.987 4.656 6.414 hybrid contribution 0.043 -0.259 -0.658 0.709 sum -4.257 -1.246 3.998 5.971 Atomic orbital electron populations 1.21679 0.91760 1.03178 1.02674 1.22666 0.96411 0.83935 0.98878 1.85917 1.18037 1.26469 1.94025 1.18222 0.84274 1.17836 0.89625 1.17718 0.91362 0.89431 0.92291 1.19692 0.98446 1.37859 0.92143 0.89654 1.26781 0.94567 0.91354 1.05068 1.69829 1.14810 1.24828 1.33877 0.85200 0.79080 0.80095 0.75618 1.18489 1.18029 1.19080 1.21224 0.94618 1.04575 0.95342 1.15711 0.83406 1.06379 0.94883 1.26036 0.92849 0.91754 0.91448 1.81074 1.12544 1.11712 1.09874 1.20364 0.92151 1.19731 0.96780 1.18903 0.90165 0.96802 0.84983 1.86093 1.37204 1.88180 1.12898 1.23251 0.97695 1.01678 0.84831 0.92325 0.89060 0.91793 0.94988 0.94470 0.89444 0.86327 0.84503 0.92357 0.86218 0.92488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.91 10.28 71.98 0.74 -3.17 16 2 C 0.06 2.14 6.78 71.98 0.49 2.62 16 3 O -0.33 -14.89 9.09 -74.98 -0.68 -15.57 16 4 C -0.05 -2.52 5.77 23.21 0.13 -2.39 16 5 C 0.10 4.77 5.57 -21.25 -0.12 4.65 16 6 C -0.45 -22.44 8.71 23.41 0.20 -22.23 16 7 H 0.09 4.21 7.64 -2.91 -0.02 4.19 16 8 C 0.04 1.83 5.14 85.24 0.44 2.27 16 9 N -0.81 -38.59 10.98 21.82 0.24 -38.35 16 10 Si 0.98 35.22 29.59 68.60 2.03 37.25 16 11 H -0.26 -9.00 7.11 99.48 0.71 -8.29 16 12 H -0.26 -9.17 7.11 99.48 0.71 -8.47 16 13 H -0.27 -9.20 7.11 99.48 0.71 -8.49 16 14 C -0.14 -6.53 8.37 23.00 0.19 -6.34 16 15 C 0.00 0.01 5.73 -21.37 -0.12 -0.12 16 16 C 0.29 12.31 15.31 88.33 1.35 13.67 16 17 N -0.48 -20.26 18.54 19.00 0.35 -19.91 16 18 C -0.27 -10.76 8.74 22.76 0.20 -10.56 16 19 C 0.14 5.85 6.68 22.47 0.15 6.00 16 20 O -0.33 -12.34 10.27 -79.49 -0.82 -13.16 16 21 C 0.02 0.51 9.81 113.37 1.11 1.62 16 22 H 0.06 1.69 8.14 -2.38 -0.02 1.68 16 23 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 24 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.29 12.71 8.30 -92.71 -0.77 11.94 16 28 H 0.12 5.98 6.19 -2.91 -0.02 5.97 16 29 H 0.14 4.64 6.24 -2.91 -0.02 4.62 16 30 H 0.06 1.40 7.65 -2.38 -0.02 1.38 16 31 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.06 1.37 7.65 -2.39 -0.02 1.35 16 Total: -1.00 -56.19 289.20 7.03 -49.15 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: 1.14 Total: 14.55 kcal Atomic # 6 Polarization: -18.73 SS G_CDS: 4.77 Total: -13.96 kcal Atomic # 7 Polarization: -58.85 SS G_CDS: 0.59 Total: -58.26 kcal Atomic # 8 Polarization: -27.23 SS G_CDS: -1.50 Total: -28.73 kcal Atomic # 14 Polarization: 35.22 SS G_CDS: 2.03 Total: 37.25 kcal Total: -56.19 7.03 -49.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044369470.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.772 kcal (2) G-P(sol) polarization free energy of solvation -56.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds