Wall clock time and date at job start Mon Mar 30 2020 05:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42895 * 109.47216 * 2 1 4 4 C 1.35849 * 117.00129 * 180.02562 * 3 2 1 5 5 C 1.37702 * 119.48821 * 0.28147 * 4 3 2 6 6 C 1.40803 * 119.87614 * 180.24993 * 5 4 3 7 7 C 1.40617 * 120.52375 * 179.72927 * 6 5 4 8 8 H 1.07999 * 119.99952 * 204.64482 * 7 6 5 9 9 C 1.40186 * 120.00154 * 24.63735 * 7 6 5 10 10 N 1.30706 * 120.00024 * 17.51033 * 9 7 6 11 11 Si 1.86805 * 120.00225 * 197.51154 * 9 7 6 12 12 H 1.48500 * 109.46715 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.47145 * 120.00255 * 11 9 7 14 14 H 1.48499 * 109.47033 * 240.00218 * 11 9 7 15 15 C 1.46638 * 118.95536 * 359.74231 * 6 5 4 16 16 C 1.43197 * 120.49347 * 179.97438 * 15 6 5 17 17 N 7.50976 * 161.76708 * 0.38267 * 2 1 3 18 18 C 1.39366 * 119.00875 * 0.02562 * 15 6 5 19 19 C 1.38504 * 120.04408 * 359.97438 * 18 15 6 20 20 O 1.35746 * 119.45513 * 180.02562 * 19 18 15 21 21 C 1.42907 * 117.00072 * 359.97438 * 20 19 18 22 22 H 1.08997 * 109.46904 * 300.00263 * 1 2 3 23 23 H 1.08999 * 109.46862 * 59.99523 * 1 2 3 24 24 H 1.08991 * 109.47370 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46466 * 240.00373 * 2 1 3 26 26 H 1.08994 * 109.46915 * 120.00022 * 2 1 3 27 27 H 1.07995 * 120.06463 * 359.97438 * 5 4 3 28 28 H 0.97001 * 120.00460 * 184.49402 * 10 9 7 29 29 H 1.08009 * 119.97819 * 179.97438 * 18 15 6 30 30 H 1.09002 * 109.46700 * 60.00124 * 21 20 19 31 31 H 1.08998 * 109.46956 * 300.00133 * 21 20 19 32 32 H 1.08994 * 109.47318 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3532 1.5252 -0.0005 5 6 4.1822 0.4258 -0.0069 6 6 5.5793 0.6008 -0.0022 7 6 6.4385 -0.5124 -0.0029 8 1 7.4403 -0.4216 0.3904 9 6 5.9948 -1.7400 -0.5140 10 7 4.9424 -1.7838 -1.2878 11 14 6.9077 -3.3135 -0.0891 12 1 8.0559 -2.9955 0.7973 13 1 5.9874 -4.2465 0.6092 14 1 7.4051 -3.9492 -1.3356 15 6 6.1243 1.9621 0.0037 16 6 7.5398 2.1782 0.0092 17 7 8.6628 2.3496 0.0157 18 6 5.2439 3.0425 0.0051 19 6 3.8764 2.8227 0.0003 20 8 3.0297 3.8838 0.0012 21 6 3.6204 5.1851 0.0077 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 3.7617 -0.5689 -0.0111 28 1 4.5966 -2.6387 -1.5885 29 1 5.6282 4.0519 0.0099 30 1 4.2413 5.3066 -0.8799 31 1 4.2355 5.3004 0.9001 32 1 2.8348 5.9406 0.0072 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044369498.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:24 Heat of formation + Delta-G solvation = -52.294563 kcal Electronic energy + Delta-G solvation = -17492.887558 eV Core-core repulsion = 14611.388270 eV Total energy + Delta-G solvation = -2881.499288 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.98480 -39.18103 -38.16085 -36.71863 -35.27548 -32.65284 -31.25323 -30.51902 -28.40214 -26.87302 -24.75053 -23.36671 -22.22430 -19.91615 -19.49035 -18.37819 -17.26758 -17.00020 -16.93609 -16.37884 -16.10826 -15.32896 -14.91560 -14.51894 -14.46847 -14.36636 -13.85161 -13.75287 -13.44179 -13.30810 -13.09724 -12.91508 -12.57945 -12.52667 -12.34778 -12.05624 -11.86589 -11.60493 -11.57522 -11.40942 -10.88505 -9.41512 -8.96656 -8.52886 -6.48310 0.32162 0.87907 1.37731 1.47129 1.51771 2.02085 2.14754 2.30099 2.51010 2.63813 2.82048 3.52751 3.59862 4.14526 4.18515 4.33751 4.50205 4.52730 4.56035 4.65811 4.82531 4.84299 4.97166 4.99110 5.05656 5.09567 5.26037 5.31173 5.48657 5.75788 5.94831 6.25146 6.50140 6.57827 6.65358 6.93140 7.08147 8.08810 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.015904 B = 0.009958 C = 0.006258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.140340 B = 2811.274072 C = 4473.515648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.049 3.951 3 O -0.325 6.325 4 C 0.146 3.854 5 C -0.239 4.239 6 C 0.140 3.860 7 C -0.461 4.461 8 H 0.071 0.929 9 C 0.047 3.953 10 N -0.786 5.786 11 Si 0.976 3.024 12 H -0.267 1.267 13 H -0.249 1.249 14 H -0.264 1.264 15 C -0.208 4.208 16 C 0.309 3.691 17 N -0.527 5.527 18 C -0.075 4.075 19 C -0.030 4.030 20 O -0.334 6.334 21 C 0.024 3.976 22 H 0.066 0.934 23 H 0.063 0.937 24 H 0.099 0.901 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.143 0.857 28 H 0.301 0.699 29 H 0.140 0.860 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.779 0.470 1.576 8.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.026 4.026 3 O -0.239 6.239 4 C 0.099 3.901 5 C -0.259 4.259 6 C 0.135 3.865 7 C -0.489 4.489 8 H 0.089 0.911 9 C -0.173 4.173 10 N -0.409 5.409 11 Si 0.796 3.204 12 H -0.191 1.191 13 H -0.172 1.172 14 H -0.188 1.188 15 C -0.215 4.215 16 C 0.001 3.999 17 N -0.207 5.207 18 C -0.096 4.096 19 C -0.074 4.074 20 O -0.250 6.250 21 C -0.071 4.071 22 H 0.085 0.915 23 H 0.082 0.918 24 H 0.117 0.883 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.160 0.840 28 H 0.113 0.887 29 H 0.157 0.843 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -7.549 0.736 1.381 7.709 hybrid contribution 0.514 -0.745 0.000 0.905 sum -7.035 -0.008 1.380 7.169 Atomic orbital electron populations 1.21753 0.90682 1.03943 1.03221 1.22905 0.97004 0.81480 1.01251 1.85994 1.18980 1.30258 1.88717 1.18435 0.82538 0.91553 0.97544 1.21193 0.92792 0.97160 1.14764 1.18424 0.92081 0.89869 0.86127 1.19771 1.00220 0.94821 1.34040 0.91061 1.26730 0.95812 1.03602 0.91184 1.69730 1.20488 1.30490 1.20225 0.85228 0.79312 0.76408 0.79424 1.19141 1.17217 1.18817 1.16738 0.83461 0.93975 1.27299 1.25745 0.92677 0.90822 0.90687 1.80999 1.12565 1.10791 1.16381 1.20568 0.90358 0.97914 1.00802 1.17581 0.88094 0.85206 1.16533 1.85949 1.34100 1.13670 1.91301 1.23135 1.00707 0.82149 1.01142 0.91514 0.91770 0.88276 0.92659 0.92666 0.83962 0.88690 0.84261 0.93082 0.92846 0.86533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 10.28 71.98 0.74 -2.57 16 2 C 0.05 1.61 5.44 71.98 0.39 2.00 16 3 O -0.33 -13.35 9.86 -77.04 -0.76 -14.11 16 4 C 0.15 6.58 6.69 22.54 0.15 6.73 16 5 C -0.24 -11.31 7.65 22.77 0.17 -11.13 16 6 C 0.14 7.04 5.73 -19.88 -0.11 6.93 16 7 C -0.46 -23.17 8.56 23.32 0.20 -22.97 16 8 H 0.07 3.69 7.37 -2.91 -0.02 3.66 16 9 C 0.05 2.14 5.15 85.33 0.44 2.58 16 10 N -0.79 -35.48 10.95 21.87 0.24 -35.24 16 11 Si 0.98 34.78 29.60 68.60 2.03 36.81 16 12 H -0.27 -9.94 7.11 99.48 0.71 -9.24 16 13 H -0.25 -8.09 7.11 99.48 0.71 -7.38 16 14 H -0.26 -9.09 7.11 99.48 0.71 -8.38 16 15 C -0.21 -9.87 5.94 -19.57 -0.12 -9.99 16 16 C 0.31 14.86 14.28 88.33 1.26 16.12 16 17 N -0.53 -25.76 18.54 19.00 0.35 -25.41 16 18 C -0.08 -3.16 8.72 22.61 0.20 -2.96 16 19 C -0.03 -1.28 6.71 22.74 0.15 -1.13 16 20 O -0.33 -12.89 10.22 -75.89 -0.78 -13.67 16 21 C 0.02 0.64 9.79 113.37 1.11 1.75 16 22 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 23 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 24 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.06 1.93 7.61 -2.39 -0.02 1.91 16 26 H 0.06 1.80 7.64 -2.39 -0.02 1.78 16 27 H 0.14 6.60 4.31 -2.91 -0.01 6.59 16 28 H 0.30 11.89 8.30 -92.71 -0.77 11.12 16 29 H 0.14 4.96 6.20 -2.91 -0.02 4.94 16 30 H 0.05 1.32 7.63 -2.39 -0.02 1.30 16 31 H 0.05 1.35 7.63 -2.39 -0.02 1.33 16 32 H 0.12 2.39 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -58.32 284.70 6.82 -51.49 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: 1.15 Total: 14.77 kcal Atomic # 6 Polarization: -19.23 SS G_CDS: 4.59 Total: -14.65 kcal Atomic # 7 Polarization: -61.24 SS G_CDS: 0.59 Total: -60.65 kcal Atomic # 8 Polarization: -26.24 SS G_CDS: -1.54 Total: -27.78 kcal Atomic # 14 Polarization: 34.78 SS G_CDS: 2.03 Total: 36.81 kcal Total: -58.32 6.82 -51.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044369498.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.800 kcal (2) G-P(sol) polarization free energy of solvation -58.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds