Wall clock time and date at job start Mon Mar 30 2020 05:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42905 * 109.46805 * 2 1 4 4 C 1.35753 * 116.99870 * 179.97438 * 3 2 1 5 5 C 1.38501 * 119.45375 * 0.24535 * 4 3 2 6 6 C 1.39362 * 120.03955 * 180.27024 * 5 4 3 7 7 C 1.43199 * 120.49620 * 179.76523 * 6 5 4 8 8 N 5.78489 * 165.46714 * 179.97438 * 2 1 3 9 9 C 1.46636 * 119.01419 * 359.74935 * 6 5 4 10 10 C 1.40621 * 120.52534 * 179.97438 * 9 6 5 11 11 H 1.07997 * 119.99841 * 24.64993 * 10 9 6 12 12 C 1.40180 * 119.99850 * 204.64900 * 10 9 6 13 13 N 1.30713 * 120.00061 * 17.50890 * 12 10 9 14 14 Si 1.86806 * 120.00075 * 197.50331 * 12 10 9 15 15 H 1.48495 * 109.46909 * 60.00117 * 14 12 10 16 16 H 1.48497 * 109.46953 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47020 * 300.00381 * 14 12 10 18 18 C 1.40802 * 118.95139 * 359.97438 * 9 6 5 19 19 C 1.37698 * 119.87783 * 0.02562 * 18 9 6 20 20 O 1.35851 * 119.49186 * 179.97438 * 19 18 9 21 21 C 1.42906 * 116.99812 * 359.97438 * 20 19 18 22 22 H 1.09003 * 109.47437 * 299.99219 * 1 2 3 23 23 H 1.09002 * 109.47435 * 59.99923 * 1 2 3 24 24 H 1.09009 * 109.46990 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47144 * 240.01026 * 2 1 3 26 26 H 1.09002 * 109.47435 * 120.00077 * 2 1 3 27 27 H 1.08005 * 119.97707 * 0.03644 * 5 4 3 28 28 H 0.97003 * 119.99963 * 184.57857 * 13 12 10 29 29 H 1.08002 * 120.06241 * 179.97438 * 18 9 6 30 30 H 1.08997 * 109.46736 * 180.02562 * 21 20 19 31 31 H 1.08999 * 109.46995 * 60.00268 * 21 20 19 32 32 H 1.09000 * 109.47037 * 300.00057 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3521 1.5253 0.0005 5 6 4.1853 0.4189 -0.0041 6 6 5.5687 0.5874 0.0021 7 6 6.4392 -0.5496 0.0024 8 7 7.1298 -1.4516 0.0006 9 6 6.1196 1.9463 0.0079 10 6 7.5105 2.1531 0.0148 11 1 8.1714 1.3926 -0.3742 12 6 8.0392 3.3463 0.5264 13 7 7.3073 4.1086 1.2956 14 14 9.7899 3.8469 0.1090 15 1 9.9244 3.9967 -1.3622 16 1 10.1061 5.1387 0.7696 17 1 10.7309 2.8029 0.5884 18 6 5.2339 3.0409 0.0065 19 6 3.8743 2.8231 0.0003 20 8 3.0269 3.8849 -0.0005 21 6 3.6175 5.1862 0.0059 22 1 -0.3634 0.5137 0.8901 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0278 -0.0005 25 1 1.8933 -0.5137 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.7626 -0.5750 -0.0087 28 1 7.6488 4.9656 1.5955 29 1 5.6203 4.0494 0.0111 30 1 2.8318 5.9417 0.0050 31 1 4.2395 5.3073 -0.8810 32 1 4.2315 5.3022 0.8990 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044369508.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:09 Heat of formation + Delta-G solvation = -37.777363 kcal Electronic energy + Delta-G solvation = -17438.036116 eV Core-core repulsion = 14557.166341 eV Total energy + Delta-G solvation = -2880.869775 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.35084 -37.66230 -36.43674 -34.87546 -33.61300 -31.29197 -29.41274 -29.09707 -26.87789 -25.23804 -23.35999 -21.67370 -20.67824 -18.25323 -17.81527 -16.62162 -15.68757 -15.49587 -15.35491 -14.88459 -14.74310 -13.62919 -13.45699 -12.83017 -12.78047 -12.68999 -12.41716 -12.32796 -11.94869 -11.69097 -11.51489 -11.48717 -11.17096 -11.02463 -10.70540 -10.67258 -10.23517 -10.21588 -9.95333 -9.78528 -9.20485 -7.67415 -7.25743 -6.81513 -4.67529 2.10366 2.57448 2.90836 2.94139 3.04652 3.69557 3.89107 4.07190 4.12241 4.14406 4.43913 5.27858 5.33618 5.37082 5.45545 5.62088 5.70877 5.81135 5.85449 5.94474 6.08100 6.11373 6.23357 6.47591 6.57369 6.69956 6.80954 6.98679 7.24056 7.53727 7.68204 7.97774 8.14216 8.35162 8.42913 8.69406 8.82730 9.75747 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.022063 B = 0.007943 C = 0.005961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.761253 B = 3524.167362 C = 4696.094343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.058 3.942 3 O -0.316 6.316 4 C -0.025 4.025 5 C -0.082 4.082 6 C -0.186 4.186 7 C 0.303 3.697 8 N -0.510 5.510 9 C 0.162 3.838 10 C -0.432 4.432 11 H 0.086 0.914 12 C 0.079 3.921 13 N -0.769 5.769 14 Si 0.913 3.087 15 H -0.259 1.259 16 H -0.274 1.274 17 H -0.261 1.261 18 C -0.229 4.229 19 C 0.150 3.850 20 O -0.319 6.319 21 C 0.032 3.968 22 H 0.062 0.938 23 H 0.061 0.939 24 H 0.068 0.932 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.113 0.887 28 H 0.290 0.710 29 H 0.144 0.856 30 H 0.084 0.916 31 H 0.048 0.952 32 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.732 2.882 -1.507 7.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.019 4.019 3 O -0.232 6.232 4 C -0.069 4.069 5 C -0.103 4.103 6 C -0.193 4.193 7 C -0.006 4.006 8 N -0.190 5.190 9 C 0.157 3.843 10 C -0.459 4.459 11 H 0.104 0.896 12 C -0.144 4.144 13 N -0.393 5.393 14 Si 0.736 3.264 15 H -0.183 1.183 16 H -0.198 1.198 17 H -0.185 1.185 18 C -0.249 4.249 19 C 0.104 3.896 20 O -0.233 6.233 21 C -0.063 4.063 22 H 0.081 0.919 23 H 0.080 0.920 24 H 0.087 0.913 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.131 0.869 28 H 0.101 0.899 29 H 0.161 0.839 30 H 0.102 0.898 31 H 0.066 0.934 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.002 1.832 -1.304 6.410 hybrid contribution 0.868 0.554 -0.053 1.031 sum -5.135 2.386 -1.357 5.822 Atomic orbital electron populations 1.21719 0.93983 1.01775 1.03011 1.22489 0.94780 0.84172 1.00408 1.85965 1.19452 1.26348 1.91452 1.17376 0.81625 0.90529 1.17385 1.20360 0.92023 0.95904 1.02055 1.16578 0.89052 0.87878 1.25767 1.25637 0.92023 0.91834 0.91113 1.81022 1.10087 1.12449 1.15428 1.18118 0.92883 0.87695 0.85633 1.19615 0.92178 1.01603 1.32544 0.89631 1.26061 1.00997 0.95594 0.91703 1.69737 1.39080 1.09901 1.20543 0.86244 0.81076 0.78704 0.80346 1.18273 1.19821 1.18477 1.21218 0.89135 1.00742 1.13757 1.18259 0.88887 0.84135 0.98345 1.86004 1.34763 1.13319 1.89167 1.22886 0.99057 0.82702 1.01679 0.91937 0.91966 0.91341 0.93190 0.93159 0.86936 0.89903 0.83873 0.89785 0.93364 0.92356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 10.28 37.16 0.38 -1.40 16 2 C 0.06 0.89 5.44 37.16 0.20 1.09 16 3 O -0.32 -6.35 9.86 -34.47 -0.34 -6.69 16 4 C -0.03 -0.55 6.71 -38.86 -0.26 -0.81 16 5 C -0.08 -1.75 8.72 -39.07 -0.34 -2.09 16 6 C -0.19 -4.37 5.94 -104.17 -0.62 -4.99 16 7 C 0.30 7.21 14.28 -22.47 -0.32 6.89 16 8 N -0.51 -12.38 18.54 41.84 0.78 -11.60 16 9 C 0.16 3.98 5.73 -104.64 -0.60 3.38 16 10 C -0.43 -10.59 8.56 -37.95 -0.33 -10.91 16 11 H 0.09 2.12 7.37 -52.49 -0.39 1.74 16 12 C 0.08 1.77 5.15 -17.30 -0.09 1.68 16 13 N -0.77 -17.43 10.95 55.56 0.61 -16.82 16 14 Si 0.91 17.12 29.60 -169.99 -5.03 12.09 16 15 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 16 H -0.27 -4.90 7.11 56.52 0.40 -4.50 16 17 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 18 C -0.23 -5.32 7.65 -38.81 -0.30 -5.61 16 19 C 0.15 3.37 6.69 -39.16 -0.26 3.10 16 20 O -0.32 -6.62 10.22 -34.77 -0.36 -6.97 16 21 C 0.03 0.53 9.79 101.05 0.99 1.52 16 22 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 25 H 0.05 0.73 7.62 -51.93 -0.40 0.34 16 26 H 0.05 0.75 7.64 -51.93 -0.40 0.35 16 27 H 0.11 2.11 6.20 -52.48 -0.33 1.78 16 28 H 0.29 5.87 8.30 -40.82 -0.34 5.53 16 29 H 0.14 3.25 4.31 -52.49 -0.23 3.03 16 30 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.05 0.76 7.63 -51.93 -0.40 0.36 16 32 H 0.06 0.98 7.63 -51.93 -0.40 0.59 16 LS Contribution 284.70 15.07 4.29 4.29 Total: -1.00 -27.16 284.70 -4.94 -32.10 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -3.35 Total: 1.75 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: -1.54 Total: -8.15 kcal Atomic # 7 Polarization: -29.81 SS G_CDS: 1.38 Total: -28.42 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: -0.70 Total: -13.66 kcal Atomic # 14 Polarization: 17.12 SS G_CDS: -5.03 Total: 12.09 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -27.16 -4.94 -32.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044369508.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.681 kcal (2) G-P(sol) polarization free energy of solvation -27.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds