Wall clock time and date at job start Mon Mar 30 2020 06:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99819 * 2 1 4 4 H 1.48494 * 109.47372 * 270.00299 * 3 2 1 5 5 H 1.48501 * 109.47042 * 30.00801 * 3 2 1 6 6 H 1.48502 * 109.47078 * 150.00220 * 3 2 1 7 7 C 1.37878 * 120.00461 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00348 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99631 * 359.97438 * 7 2 1 10 10 N 1.46897 * 109.47004 * 179.97438 * 9 7 2 11 11 C 1.46905 * 110.99967 * 174.80475 * 10 9 7 12 12 H 1.08996 * 109.25197 * 326.60114 * 11 10 9 13 13 C 1.52728 * 109.25012 * 86.07061 * 11 10 9 14 14 C 1.53331 * 108.37086 * 171.38612 * 13 11 10 15 15 C 1.52729 * 108.36679 * 290.05227 * 14 13 11 16 16 C 1.50645 * 110.59495 * 51.07133 * 15 14 13 17 17 C 1.38825 * 117.70358 * 162.52859 * 16 15 14 18 18 C 1.38426 * 120.51013 * 179.78023 * 17 16 15 19 19 O 1.35905 * 120.17294 * 179.97438 * 18 17 16 20 20 C 1.38762 * 119.64934 * 359.97154 * 18 17 16 21 21 C 1.37822 * 119.71421 * 0.10799 * 20 18 17 22 22 C 1.37660 * 122.55020 * 342.42034 * 16 15 14 23 23 H 0.97005 * 120.00297 * 359.97438 * 1 2 3 24 24 H 1.09006 * 109.47486 * 299.99980 * 9 7 2 25 25 H 1.09002 * 109.47050 * 60.00075 * 9 7 2 26 26 H 1.00896 * 111.00087 * 298.75878 * 10 9 7 27 27 H 1.09002 * 109.68112 * 291.10189 * 13 11 10 28 28 H 1.08993 * 109.68860 * 51.66568 * 13 11 10 29 29 H 1.09005 * 109.68348 * 49.76933 * 14 13 11 30 30 H 1.09000 * 109.68826 * 170.32909 * 14 13 11 31 31 H 1.09008 * 109.25168 * 171.35185 * 15 14 13 32 32 H 1.08994 * 109.25549 * 290.77637 * 15 14 13 33 33 H 1.08011 * 119.74586 * 359.75121 * 17 16 15 34 34 H 0.96697 * 113.99461 * 90.00104 * 19 18 17 35 35 H 1.07999 * 120.13996 * 180.08942 * 20 18 17 36 36 H 1.07995 * 119.68883 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2057 -3.6156 -0.0018 11 6 1.5098 -4.9034 0.1224 12 1 0.6248 -4.7750 0.7455 13 6 1.0844 -5.3816 -1.2643 14 6 0.5577 -6.8163 -1.1402 15 6 1.7368 -7.7368 -0.8320 16 6 2.5318 -7.2076 0.3330 17 6 3.3951 -8.0839 0.9764 18 6 4.1570 -7.6579 2.0508 19 8 4.9996 -8.5217 2.6760 20 6 4.0559 -6.3441 2.4859 21 6 3.1968 -5.4768 1.8462 22 6 2.4309 -5.9055 0.7681 23 1 -0.4851 0.8401 0.0004 24 1 0.6247 -2.5571 0.8897 25 1 0.6241 -2.5566 -0.8903 26 1 2.7845 -3.5956 -0.8280 27 1 0.2976 -4.7338 -1.6507 28 1 1.9408 -5.3620 -1.9382 29 1 -0.1718 -6.8709 -0.3322 30 1 0.0911 -7.1185 -2.0778 31 1 1.3624 -8.7314 -0.5894 32 1 2.3819 -7.8003 -1.7082 33 1 3.4726 -9.1062 0.6365 34 1 5.8921 -8.5387 2.3044 35 1 4.6477 -6.0029 3.3224 36 1 3.1182 -4.4545 2.1854 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044746944.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:55 Heat of formation + Delta-G solvation = -55.261296 kcal Electronic energy + Delta-G solvation = -17590.264728 eV Core-core repulsion = 14844.469888 eV Total energy + Delta-G solvation = -2745.794840 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.23054 -39.03771 -36.85910 -35.65024 -34.52642 -32.04109 -30.55139 -29.29406 -27.59055 -24.45809 -23.72040 -23.48738 -22.51719 -20.67792 -18.78040 -18.63057 -17.22455 -16.84683 -16.54870 -16.09240 -15.92798 -15.40243 -15.13334 -14.61830 -14.39821 -14.23253 -13.91781 -13.56905 -13.37121 -13.20979 -12.97655 -12.73285 -12.54381 -12.26371 -12.17217 -11.97798 -11.78588 -11.47978 -11.21356 -11.17993 -10.65005 -9.63839 -9.31227 -9.05606 -8.21834 -6.32860 0.34366 0.46734 1.40828 1.42344 1.54035 2.39805 2.70564 3.11216 3.33397 3.52318 3.80309 3.86749 4.02356 4.11667 4.19167 4.35480 4.40695 4.49892 4.70009 4.72413 4.87711 4.96751 4.99951 5.10075 5.12023 5.13746 5.25927 5.28060 5.37045 5.52509 5.55943 5.62890 5.82174 5.99292 6.05926 6.46438 6.72200 6.88826 6.91333 7.38064 8.89185 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.027564 B = 0.005379 C = 0.004646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.570184 B = 5203.898545 C = 6025.631210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.002 3.998 3 Si 0.971 3.029 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.532 4.532 8 H 0.063 0.937 9 C 0.213 3.787 10 N -0.678 5.678 11 C 0.125 3.875 12 H 0.058 0.942 13 C -0.141 4.141 14 C -0.111 4.111 15 C -0.075 4.075 16 C -0.061 4.061 17 C -0.154 4.154 18 C 0.101 3.899 19 O -0.507 6.507 20 C -0.165 4.165 21 C -0.085 4.085 22 C -0.087 4.087 23 H 0.265 0.735 24 H -0.004 1.004 25 H -0.035 1.035 26 H 0.335 0.665 27 H 0.049 0.951 28 H 0.070 0.930 29 H 0.059 0.941 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.148 0.852 34 H 0.408 0.592 35 H 0.133 0.867 36 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.895 -17.415 -1.225 18.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.196 4.196 3 Si 0.796 3.204 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.190 1.190 7 C -0.571 4.571 8 H 0.081 0.919 9 C 0.086 3.914 10 N -0.308 5.308 11 C 0.015 3.985 12 H 0.076 0.924 13 C -0.180 4.180 14 C -0.149 4.149 15 C -0.111 4.111 16 C -0.062 4.062 17 C -0.172 4.172 18 C 0.056 3.944 19 O -0.320 6.320 20 C -0.183 4.183 21 C -0.104 4.104 22 C -0.087 4.087 23 H 0.073 0.927 24 H 0.014 0.986 25 H -0.017 1.017 26 H 0.153 0.847 27 H 0.068 0.932 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.106 0.894 31 H 0.115 0.885 32 H 0.109 0.891 33 H 0.166 0.834 34 H 0.267 0.733 35 H 0.151 0.849 36 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 6.403 -17.351 -0.187 18.496 hybrid contribution 0.066 1.381 -0.860 1.628 sum 6.469 -15.970 -1.046 17.263 Atomic orbital electron populations 1.70086 1.07767 1.27939 1.51658 1.25918 0.95739 1.03259 0.94659 0.85355 0.78468 0.78127 0.78473 1.19637 1.20794 1.19035 1.21528 0.93760 0.91408 1.50368 0.91910 1.19187 0.90381 0.88698 0.93154 1.60565 1.23725 1.01163 1.45303 1.20316 0.94092 0.88457 0.95674 0.92415 1.22196 1.01067 0.98067 0.96688 1.21498 0.97655 0.93081 1.02638 1.20531 0.95832 0.99372 0.95378 1.19744 0.97056 0.91964 0.97441 1.21511 0.98789 1.00912 0.96013 1.18403 0.94708 0.88337 0.92913 1.84755 1.26276 1.61571 1.59446 1.21480 1.01663 0.93220 1.01945 1.21126 0.94963 0.99414 0.94871 1.19689 0.98496 0.93796 0.96754 0.92661 0.98612 1.01717 0.84743 0.93230 0.91122 0.92211 0.89354 0.88542 0.89124 0.83395 0.73285 0.84926 0.86800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.69 13.29 21.45 0.28 -56.40 16 2 C 0.00 0.14 5.46 84.66 0.46 0.60 16 3 Si 0.97 44.54 29.54 68.60 2.03 46.57 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.53 -30.53 9.36 25.60 0.24 -30.29 16 8 H 0.06 3.51 7.81 -2.91 -0.02 3.49 16 9 C 0.21 11.46 5.26 85.56 0.45 11.91 16 10 N -0.68 -29.40 5.30 -500.01 -2.65 -32.05 16 11 C 0.12 4.55 2.47 44.06 0.11 4.65 16 12 H 0.06 2.35 7.68 -2.39 -0.02 2.33 16 13 C -0.14 -4.30 5.26 30.61 0.16 -4.14 16 14 C -0.11 -2.53 5.98 30.62 0.18 -2.35 16 15 C -0.07 -1.48 5.67 29.74 0.17 -1.32 16 16 C -0.06 -1.60 5.73 -19.88 -0.11 -1.71 16 17 C -0.15 -3.60 9.55 22.45 0.21 -3.39 16 18 C 0.10 2.53 6.70 22.44 0.15 2.68 16 19 O -0.51 -10.47 13.51 -92.48 -1.25 -11.72 16 20 C -0.16 -4.69 9.99 22.30 0.22 -4.47 16 21 C -0.09 -2.86 9.20 22.36 0.21 -2.66 16 22 C -0.09 -2.80 5.56 -19.83 -0.11 -2.91 16 23 H 0.26 15.07 8.31 -92.70 -0.77 14.30 16 24 H 0.00 -0.25 7.92 -2.38 -0.02 -0.27 16 25 H -0.03 -1.99 7.86 -2.39 -0.02 -2.01 16 26 H 0.34 13.90 8.38 -89.70 -0.75 13.15 16 27 H 0.05 1.68 7.87 -2.39 -0.02 1.66 16 28 H 0.07 2.05 7.91 -2.39 -0.02 2.03 16 29 H 0.06 1.44 8.10 -2.38 -0.02 1.42 16 30 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.10 1.50 8.13 -2.38 -0.02 1.48 16 32 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.15 2.63 8.05 -2.91 -0.02 2.61 16 34 H 0.41 4.26 9.06 -74.06 -0.67 3.59 16 35 H 0.13 3.39 8.06 -2.91 -0.02 3.37 16 36 H 0.11 4.34 7.61 -2.91 -0.02 4.32 16 Total: -1.00 -67.05 298.18 0.42 -66.63 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: -0.34 Total: 20.35 kcal Atomic # 6 Polarization: -35.73 SS G_CDS: 2.34 Total: -33.38 kcal Atomic # 7 Polarization: -86.08 SS G_CDS: -2.37 Total: -88.45 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: -1.25 Total: -11.72 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -67.05 0.42 -66.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044746944.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.365 kcal (2) G-P(sol) polarization free energy of solvation -67.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds