Wall clock time and date at job start Mon Mar 30 2020 06:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86801 * 119.99973 * 2 1 4 4 H 1.48498 * 109.47437 * 240.00217 * 3 2 1 5 5 H 1.48500 * 109.46996 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46926 * 119.99798 * 3 2 1 7 7 C 1.37877 * 120.00296 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99990 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00008 * 0.02562 * 7 2 1 10 10 N 1.46899 * 109.47298 * 179.97438 * 9 7 2 11 11 C 1.46905 * 110.99965 * 174.84027 * 10 9 7 12 12 H 1.08998 * 109.24726 * 33.62054 * 11 10 9 13 13 C 1.52730 * 109.24855 * 274.16054 * 11 10 9 14 14 C 1.53329 * 108.38173 * 188.58631 * 13 11 10 15 15 C 1.52726 * 108.40753 * 69.87080 * 14 13 11 16 16 C 1.50657 * 110.58427 * 308.92683 * 15 14 13 17 17 C 1.38832 * 117.68828 * 197.39890 * 16 15 14 18 18 C 1.38427 * 120.50444 * 180.55696 * 17 16 15 19 19 O 1.35894 * 120.17556 * 180.02562 * 18 17 16 20 20 C 1.38766 * 119.65050 * 359.97438 * 18 17 16 21 21 C 1.37827 * 119.71360 * 359.88401 * 20 18 17 22 22 C 1.37711 * 122.57186 * 17.74187 * 16 15 14 23 23 H 0.97003 * 120.00520 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.46952 * 59.99283 * 9 7 2 25 25 H 1.08999 * 109.46653 * 299.99799 * 9 7 2 26 26 H 1.00898 * 110.99978 * 298.79292 * 10 9 7 27 27 H 1.08998 * 109.68599 * 68.86295 * 13 11 10 28 28 H 1.09006 * 109.68068 * 308.30764 * 13 11 10 29 29 H 1.08996 * 109.67709 * 189.60897 * 14 13 11 30 30 H 1.08997 * 109.67979 * 310.13157 * 14 13 11 31 31 H 1.09006 * 109.25800 * 69.18005 * 15 14 13 32 32 H 1.09002 * 109.25660 * 188.60658 * 15 14 13 33 33 H 1.07995 * 119.74852 * 0.54904 * 17 16 15 34 34 H 0.96703 * 113.99662 * 269.97768 * 19 18 17 35 35 H 1.08002 * 120.14227 * 179.90505 * 20 18 17 36 36 H 1.07999 * 119.68776 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5096 -4.9035 0.1239 12 1 0.5481 -4.8424 -0.3858 13 6 1.2775 -5.2108 1.6018 14 6 0.7496 -6.6455 1.7202 15 6 1.8823 -7.6069 1.3663 16 6 2.5084 -7.2260 0.0500 17 6 3.2838 -8.1798 -0.5955 18 6 3.8959 -7.8882 -1.8024 19 8 4.6529 -8.8270 -2.4287 20 6 3.7314 -6.6326 -2.3698 21 6 2.9587 -5.6888 -1.7282 22 6 2.3433 -5.9821 -0.5172 23 1 -0.4851 0.8400 0.0004 24 1 0.6247 -2.5570 -0.8896 25 1 0.6242 -2.5567 0.8903 26 1 2.7855 -3.5957 -0.8250 27 1 0.5449 -4.5151 2.0109 28 1 2.2165 -5.1189 2.1478 29 1 0.4163 -6.8308 2.7413 30 1 -0.0824 -6.7885 1.0307 31 1 2.6410 -7.5720 2.1481 32 1 1.4855 -8.6197 1.2964 33 1 3.4105 -9.1566 -0.1526 34 1 5.5868 -8.8104 -2.1781 35 1 4.2066 -6.3961 -3.3104 36 1 2.8306 -4.7119 -2.1704 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044746945.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:58 Heat of formation + Delta-G solvation = -31.598969 kcal Electronic energy + Delta-G solvation = -17593.762821 eV Core-core repulsion = 14848.994056 eV Total energy + Delta-G solvation = -2744.768765 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.22144 -37.94932 -35.35706 -34.57126 -32.63474 -30.63866 -29.40486 -27.99545 -25.90973 -23.20685 -22.66152 -22.01786 -20.78624 -19.44408 -17.86588 -16.77013 -15.88698 -15.73005 -15.21530 -14.68783 -14.59870 -14.16775 -13.84029 -13.46067 -12.94854 -12.73372 -12.57274 -12.21142 -12.04189 -11.89398 -11.43211 -11.20655 -10.87070 -10.77524 -10.72914 -10.58423 -10.25921 -10.04349 -9.81723 -9.18042 -8.69170 -8.51875 -8.31262 -7.28524 -6.03373 -4.05385 1.33836 1.42223 3.33453 3.37349 3.40488 3.66613 4.21576 4.42687 4.76839 4.91251 5.02249 5.04429 5.23837 5.32228 5.32514 5.42411 5.46332 5.67941 5.78241 5.90258 5.96350 6.03465 6.06914 6.19640 6.20862 6.36602 6.49348 6.63992 6.71648 6.83643 6.93559 7.24614 7.36889 7.63715 7.78482 8.12024 8.38733 8.57569 9.03356 9.59540 11.07527 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.028496 B = 0.005293 C = 0.004636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.374226 B = 5288.330812 C = 6037.727257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.899 3.101 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.513 4.513 8 H 0.062 0.938 9 C 0.193 3.807 10 N -0.684 5.684 11 C 0.123 3.877 12 H 0.049 0.951 13 C -0.104 4.104 14 C -0.120 4.120 15 C -0.078 4.078 16 C -0.057 4.057 17 C -0.149 4.149 18 C 0.092 3.908 19 O -0.502 6.502 20 C -0.145 4.145 21 C -0.100 4.100 22 C -0.068 4.068 23 H 0.262 0.738 24 H -0.014 1.014 25 H 0.030 0.970 26 H 0.329 0.671 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.123 0.877 34 H 0.386 0.614 35 H 0.126 0.874 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.588 -16.052 -0.186 16.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.552 4.552 8 H 0.080 0.920 9 C 0.067 3.933 10 N -0.316 5.316 11 C 0.013 3.987 12 H 0.067 0.933 13 C -0.143 4.143 14 C -0.158 4.158 15 C -0.115 4.115 16 C -0.058 4.058 17 C -0.167 4.167 18 C 0.048 3.952 19 O -0.312 6.312 20 C -0.164 4.164 21 C -0.119 4.119 22 C -0.069 4.069 23 H 0.071 0.929 24 H 0.004 0.996 25 H 0.048 0.952 26 H 0.149 0.851 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.141 0.859 34 H 0.241 0.759 35 H 0.144 0.856 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 5.021 -16.006 0.215 16.776 hybrid contribution 0.526 0.997 -0.808 1.387 sum 5.546 -15.008 -0.593 16.012 Atomic orbital electron populations 1.69947 1.06072 1.26903 1.50860 1.24979 0.94861 0.99317 0.95347 0.86548 0.79425 0.82691 0.78651 1.20287 1.21348 1.20161 1.21133 0.93512 0.90154 1.50391 0.92016 1.19623 0.90476 0.87367 0.95846 1.60866 1.24585 1.00724 1.45450 1.20338 0.94497 0.88530 0.95348 0.93328 1.21530 1.01895 0.94837 0.96002 1.21582 0.97470 0.95434 1.01360 1.20480 0.97955 0.99249 0.93815 1.19483 0.97278 0.92695 0.96330 1.21329 1.00609 0.99797 0.94978 1.18313 0.96613 0.88201 0.92044 1.84817 1.23632 1.54935 1.67776 1.21286 1.01511 0.92650 1.00933 1.21113 0.96599 0.99302 0.94865 1.19938 0.97852 0.94486 0.94611 0.92856 0.99619 0.95203 0.85134 0.91249 0.90993 0.91450 0.91888 0.90533 0.91131 0.85890 0.75914 0.85635 0.85340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.75 13.29 55.43 0.74 -26.01 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.51 -14.51 9.36 -34.44 -0.32 -14.83 16 8 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 9 C 0.19 5.03 5.20 -4.98 -0.03 5.00 16 10 N -0.68 -14.65 6.26 -109.40 -0.68 -15.33 16 11 C 0.12 2.22 2.53 -69.03 -0.17 2.05 16 12 H 0.05 0.94 7.82 -51.93 -0.41 0.53 16 13 C -0.10 -1.71 5.40 -26.70 -0.14 -1.85 16 14 C -0.12 -1.54 5.98 -26.70 -0.16 -1.70 16 15 C -0.08 -0.92 5.67 -28.04 -0.16 -1.08 16 16 C -0.06 -0.80 5.74 -104.62 -0.60 -1.40 16 17 C -0.15 -1.92 9.55 -39.29 -0.38 -2.29 16 18 C 0.09 1.21 6.70 -39.32 -0.26 0.95 16 19 O -0.50 -5.66 13.51 -19.41 -0.26 -5.93 16 20 C -0.15 -1.99 9.99 -39.54 -0.40 -2.38 16 21 C -0.10 -1.54 8.83 -39.46 -0.35 -1.89 16 22 C -0.07 -1.09 5.56 -104.57 -0.58 -1.67 16 23 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 24 H -0.01 -0.39 8.14 -51.93 -0.42 -0.81 16 25 H 0.03 0.83 7.54 -51.93 -0.39 0.44 16 26 H 0.33 6.74 6.08 -39.29 -0.24 6.50 16 27 H 0.07 1.22 7.65 -51.93 -0.40 0.82 16 28 H 0.07 1.21 8.10 -51.93 -0.42 0.79 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.81 8.10 -51.93 -0.42 0.39 16 31 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 0.71 8.13 -51.93 -0.42 0.28 16 33 H 0.12 1.33 8.05 -52.49 -0.42 0.91 16 34 H 0.39 2.46 9.06 45.56 0.41 2.88 16 35 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 36 H 0.13 1.98 6.54 -52.49 -0.34 1.64 16 LS Contribution 295.54 15.07 4.45 4.45 Total: -1.00 -31.30 295.54 -8.71 -40.01 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -4.29 Total: 5.75 kcal Atomic # 6 Polarization: -15.95 SS G_CDS: -3.65 Total: -19.59 kcal Atomic # 7 Polarization: -41.40 SS G_CDS: 0.05 Total: -41.34 kcal Atomic # 8 Polarization: -5.66 SS G_CDS: -0.26 Total: -5.93 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.30 -8.71 -40.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044746945.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.411 kcal (2) G-P(sol) polarization free energy of solvation -31.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds