Wall clock time and date at job start Mon Mar 30 2020 06:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86801 * 119.99973 * 2 1 4 4 H 1.48498 * 109.47437 * 240.00217 * 3 2 1 5 5 H 1.48500 * 109.46996 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46926 * 119.99798 * 3 2 1 7 7 C 1.37877 * 120.00296 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99990 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00008 * 0.02562 * 7 2 1 10 10 N 1.46899 * 109.47298 * 179.97438 * 9 7 2 11 11 C 1.46905 * 110.99965 * 174.84027 * 10 9 7 12 12 H 1.08998 * 109.24726 * 33.62054 * 11 10 9 13 13 C 1.52730 * 109.24855 * 274.16054 * 11 10 9 14 14 C 1.53329 * 108.38173 * 188.58631 * 13 11 10 15 15 C 1.52726 * 108.40753 * 69.87080 * 14 13 11 16 16 C 1.50657 * 110.58427 * 308.92683 * 15 14 13 17 17 C 1.38832 * 117.68828 * 197.39890 * 16 15 14 18 18 C 1.38427 * 120.50444 * 180.55696 * 17 16 15 19 19 O 1.35894 * 120.17556 * 180.02562 * 18 17 16 20 20 C 1.38766 * 119.65050 * 359.97438 * 18 17 16 21 21 C 1.37827 * 119.71360 * 359.88401 * 20 18 17 22 22 C 1.37711 * 122.57186 * 17.74187 * 16 15 14 23 23 H 0.97003 * 120.00520 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.46952 * 59.99283 * 9 7 2 25 25 H 1.08999 * 109.46653 * 299.99799 * 9 7 2 26 26 H 1.00898 * 110.99978 * 298.79292 * 10 9 7 27 27 H 1.08998 * 109.68599 * 68.86295 * 13 11 10 28 28 H 1.09006 * 109.68068 * 308.30764 * 13 11 10 29 29 H 1.08996 * 109.67709 * 189.60897 * 14 13 11 30 30 H 1.08997 * 109.67979 * 310.13157 * 14 13 11 31 31 H 1.09006 * 109.25800 * 69.18005 * 15 14 13 32 32 H 1.09002 * 109.25660 * 188.60658 * 15 14 13 33 33 H 1.07995 * 119.74852 * 0.54904 * 17 16 15 34 34 H 0.96703 * 113.99662 * 269.97768 * 19 18 17 35 35 H 1.08002 * 120.14227 * 179.90505 * 20 18 17 36 36 H 1.07999 * 119.68776 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5096 -4.9035 0.1239 12 1 0.5481 -4.8424 -0.3858 13 6 1.2775 -5.2108 1.6018 14 6 0.7496 -6.6455 1.7202 15 6 1.8823 -7.6069 1.3663 16 6 2.5084 -7.2260 0.0500 17 6 3.2838 -8.1798 -0.5955 18 6 3.8959 -7.8882 -1.8024 19 8 4.6529 -8.8270 -2.4287 20 6 3.7314 -6.6326 -2.3698 21 6 2.9587 -5.6888 -1.7282 22 6 2.3433 -5.9821 -0.5172 23 1 -0.4851 0.8400 0.0004 24 1 0.6247 -2.5570 -0.8896 25 1 0.6242 -2.5567 0.8903 26 1 2.7855 -3.5957 -0.8250 27 1 0.5449 -4.5151 2.0109 28 1 2.2165 -5.1189 2.1478 29 1 0.4163 -6.8308 2.7413 30 1 -0.0824 -6.7885 1.0307 31 1 2.6410 -7.5720 2.1481 32 1 1.4855 -8.6197 1.2964 33 1 3.4105 -9.1566 -0.1526 34 1 5.5868 -8.8104 -2.1781 35 1 4.2066 -6.3961 -3.3104 36 1 2.8306 -4.7119 -2.1704 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044746945.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:58 Heat of formation + Delta-G solvation = -53.295574 kcal Electronic energy + Delta-G solvation = -17594.703656 eV Core-core repulsion = 14848.994056 eV Total energy + Delta-G solvation = -2745.709600 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.34316 -39.03609 -36.80107 -35.80626 -34.61156 -32.05456 -30.62118 -29.30842 -27.75145 -24.50971 -24.08911 -23.38817 -22.25040 -20.60858 -18.83986 -18.70259 -17.32778 -16.97560 -16.58717 -16.28745 -15.98211 -15.35546 -15.16477 -14.70759 -14.41192 -14.30623 -13.87979 -13.75568 -13.26771 -13.22433 -13.04268 -12.71324 -12.59515 -12.40409 -12.04476 -11.91655 -11.77248 -11.50504 -11.20935 -11.09502 -10.66714 -9.75433 -9.55921 -9.01970 -8.23058 -6.34766 0.25245 0.35631 1.40392 1.44070 1.52174 2.39151 2.60817 3.09786 3.27299 3.54193 3.69123 3.76835 3.97325 4.14057 4.22324 4.28097 4.33935 4.43775 4.60209 4.75787 4.87794 4.96493 4.98825 5.02262 5.08235 5.16293 5.19827 5.26547 5.42300 5.44631 5.45506 5.62111 5.70244 5.88977 6.01827 6.43751 6.68134 6.85234 6.87935 7.36185 8.88118 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.028496 B = 0.005293 C = 0.004636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.374226 B = 5288.330812 C = 6037.727257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.003 3.997 3 Si 0.973 3.027 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.536 4.536 8 H 0.063 0.937 9 C 0.211 3.789 10 N -0.682 5.682 11 C 0.124 3.876 12 H 0.026 0.974 13 C -0.103 4.103 14 C -0.113 4.113 15 C -0.076 4.076 16 C -0.057 4.057 17 C -0.147 4.147 18 C 0.102 3.898 19 O -0.506 6.506 20 C -0.151 4.151 21 C -0.115 4.115 22 C -0.094 4.094 23 H 0.266 0.734 24 H -0.043 1.043 25 H 0.004 0.996 26 H 0.333 0.667 27 H 0.044 0.956 28 H 0.067 0.933 29 H 0.091 0.909 30 H 0.059 0.941 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.152 0.848 34 H 0.410 0.590 35 H 0.140 0.860 36 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.249 -17.718 0.132 19.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.195 4.195 3 Si 0.797 3.203 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.574 4.574 8 H 0.081 0.919 9 C 0.083 3.917 10 N -0.314 5.314 11 C 0.014 3.986 12 H 0.044 0.956 13 C -0.141 4.141 14 C -0.151 4.151 15 C -0.112 4.112 16 C -0.058 4.058 17 C -0.165 4.165 18 C 0.058 3.942 19 O -0.319 6.319 20 C -0.170 4.170 21 C -0.134 4.134 22 C -0.095 4.095 23 H 0.074 0.926 24 H -0.026 1.026 25 H 0.022 0.978 26 H 0.153 0.847 27 H 0.063 0.937 28 H 0.086 0.914 29 H 0.109 0.891 30 H 0.078 0.922 31 H 0.109 0.891 32 H 0.118 0.882 33 H 0.169 0.831 34 H 0.269 0.731 35 H 0.158 0.842 36 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 6.713 -17.699 0.533 18.936 hybrid contribution 0.041 1.411 -0.953 1.703 sum 6.754 -16.288 -0.420 17.637 Atomic orbital electron populations 1.70082 1.07814 1.28102 1.51389 1.25944 0.95772 1.03336 0.94487 0.85379 0.78115 0.77599 0.79158 1.19134 1.20680 1.19306 1.21484 0.93746 0.91363 1.50821 0.91907 1.19233 0.90434 0.88846 0.93159 1.60788 1.23777 1.01269 1.45611 1.20346 0.93721 0.87818 0.96706 0.95648 1.21497 1.01117 0.97166 0.94320 1.21548 0.97838 0.92886 1.02817 1.20557 0.97672 1.00102 0.92885 1.19742 0.97028 0.91843 0.97175 1.21586 0.99631 1.00567 0.94727 1.18392 0.96194 0.87881 0.91782 1.84759 1.25384 1.54019 1.67723 1.21435 1.01232 0.92822 1.01499 1.21083 0.97668 0.99422 0.95179 1.19775 0.99294 0.94963 0.95433 0.92573 1.02554 0.97804 0.84688 0.93674 0.91449 0.89058 0.92230 0.89069 0.88224 0.83055 0.73097 0.84183 0.86729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.12 13.29 21.45 0.28 -56.84 16 2 C 0.00 0.17 5.46 84.66 0.46 0.63 16 3 Si 0.97 44.75 29.54 68.60 2.03 46.77 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.54 -31.25 9.36 25.60 0.24 -31.01 16 8 H 0.06 3.57 7.81 -2.91 -0.02 3.54 16 9 C 0.21 11.65 5.20 85.56 0.44 12.09 16 10 N -0.68 -30.82 6.26 -500.02 -3.13 -33.95 16 11 C 0.12 4.70 2.53 44.06 0.11 4.81 16 12 H 0.03 1.07 7.82 -2.39 -0.02 1.06 16 13 C -0.10 -3.46 5.40 30.61 0.17 -3.29 16 14 C -0.11 -2.74 5.98 30.61 0.18 -2.55 16 15 C -0.08 -1.55 5.67 29.74 0.17 -1.39 16 16 C -0.06 -1.49 5.74 -19.86 -0.11 -1.60 16 17 C -0.15 -3.31 9.55 22.46 0.21 -3.09 16 18 C 0.10 2.40 6.70 22.44 0.15 2.55 16 19 O -0.51 -9.63 13.51 -92.36 -1.25 -10.87 16 20 C -0.15 -3.96 9.99 22.30 0.22 -3.74 16 21 C -0.11 -3.58 8.83 22.35 0.20 -3.38 16 22 C -0.09 -3.03 5.56 -19.83 -0.11 -3.14 16 23 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 24 H -0.04 -2.57 8.14 -2.39 -0.02 -2.59 16 25 H 0.00 0.23 7.54 -2.39 -0.02 0.21 16 26 H 0.33 14.40 6.08 -89.70 -0.54 13.86 16 27 H 0.04 1.69 7.65 -2.39 -0.02 1.67 16 28 H 0.07 2.30 8.10 -2.38 -0.02 2.28 16 29 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.06 1.49 8.10 -2.39 -0.02 1.47 16 31 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 32 H 0.10 1.54 8.13 -2.39 -0.02 1.52 16 33 H 0.15 2.55 8.05 -2.91 -0.02 2.52 16 34 H 0.41 3.66 9.06 -74.06 -0.67 2.99 16 35 H 0.14 3.14 8.06 -2.91 -0.02 3.12 16 36 H 0.11 3.76 6.54 -2.91 -0.02 3.74 16 Total: -1.00 -68.96 295.54 0.14 -68.82 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: -0.13 Total: 19.17 kcal Atomic # 6 Polarization: -35.44 SS G_CDS: 2.34 Total: -33.10 kcal Atomic # 7 Polarization: -87.94 SS G_CDS: -2.84 Total: -90.78 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: -1.25 Total: -10.87 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Total: -68.96 0.14 -68.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044746945.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.522 kcal (2) G-P(sol) polarization free energy of solvation -68.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds