Wall clock time and date at job start Mon Mar 30 2020 06:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30907 * 1 3 3 Si 1.86803 * 119.99902 * 2 1 4 4 H 1.48497 * 109.47103 * 269.99962 * 3 2 1 5 5 H 1.48502 * 109.47007 * 30.00431 * 3 2 1 6 6 H 1.48503 * 109.46999 * 150.00174 * 3 2 1 7 7 C 1.39858 * 119.99784 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00025 * 197.96528 * 7 2 1 9 9 C 1.41131 * 120.00561 * 17.96279 * 7 2 1 10 10 C 1.40888 * 120.15288 * 24.60990 * 9 7 2 11 11 C 1.36350 * 119.83615 * 179.97438 * 10 9 7 12 12 C 1.39564 * 120.16213 * 359.97438 * 11 10 9 13 13 N 1.38851 * 119.84450 * 179.97438 * 12 11 10 14 14 C 1.46499 * 120.00446 * 180.02562 * 13 12 11 15 15 C 1.52999 * 109.47501 * 179.97438 * 14 13 12 16 16 H 1.08999 * 109.82230 * 305.57356 * 15 14 13 17 17 C 1.54377 * 109.82905 * 184.58775 * 15 14 13 18 18 C 1.55311 * 102.25317 * 219.13000 * 17 15 14 19 19 C 1.54952 * 100.93840 * 34.13551 * 18 17 15 20 20 O 1.43235 * 109.82533 * 66.45332 * 15 14 13 21 21 C 1.39568 * 120.31259 * 0.27735 * 12 11 10 22 22 C 1.36339 * 120.16374 * 359.48608 * 21 12 11 23 23 H 0.96999 * 120.00245 * 359.97438 * 1 2 3 24 24 H 1.07997 * 120.08675 * 0.02562 * 10 9 7 25 25 H 1.07993 * 119.91727 * 180.02562 * 11 10 9 26 26 H 0.97005 * 119.99637 * 0.02562 * 13 12 11 27 27 H 1.08994 * 109.46995 * 300.00235 * 14 13 12 28 28 H 1.09004 * 109.46951 * 60.00059 * 14 13 12 29 29 H 1.08999 * 110.85357 * 337.32182 * 17 15 14 30 30 H 1.09003 * 110.84673 * 100.94455 * 17 15 14 31 31 H 1.09000 * 111.12682 * 276.22201 * 18 17 15 32 32 H 1.08995 * 111.12704 * 152.05106 * 18 17 15 33 33 H 1.09002 * 110.30932 * 204.64066 * 19 18 17 34 34 H 1.09001 * 110.39255 * 82.51696 * 19 18 17 35 35 H 1.08000 * 119.91991 * 179.71940 * 21 12 11 36 36 H 1.08003 * 120.08377 * 180.23245 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6178 0.0000 4 1 2.4906 2.0464 -1.4000 5 1 1.4405 2.6527 0.7001 6 1 3.5407 1.4402 0.7000 7 6 2.0083 -1.2112 -0.0005 8 1 3.0489 -1.2342 0.2879 9 6 1.3543 -2.4035 -0.3780 10 6 0.2260 -2.3557 -1.2204 11 6 -0.4005 -3.5116 -1.5814 12 6 0.0736 -4.7402 -1.1190 13 7 -0.5699 -5.9132 -1.4904 14 6 -0.0756 -7.2046 -1.0066 15 6 -0.9568 -8.3272 -1.5582 16 1 -2.0001 -8.1347 -1.3083 17 6 -0.5145 -9.6809 -0.9624 18 6 -0.6523 -10.6371 -2.1785 19 6 -0.2644 -9.6904 -3.3423 20 8 -0.8050 -8.4098 -2.9801 21 6 1.1876 -4.7947 -0.2800 22 6 1.8270 -3.6473 0.0853 23 1 -0.4850 0.8400 0.0004 24 1 -0.1412 -1.4059 -1.5800 25 1 -1.2652 -3.4765 -2.2274 26 1 -1.3468 -5.8776 -2.0702 27 1 0.9511 -7.3497 -1.3427 28 1 -0.1069 -7.2207 0.0828 29 1 0.5194 -9.6350 -0.6202 30 1 -1.1789 -9.9842 -0.1532 31 1 -1.6775 -10.9914 -2.2854 32 1 0.0441 -11.4721 -2.1026 33 1 -0.7070 -10.0376 -4.2759 34 1 0.8197 -9.6302 -3.4377 35 1 1.5463 -5.7485 0.0777 36 1 2.6912 -3.6914 0.7315 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049537676.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:20 Heat of formation + Delta-G solvation = -30.030899 kcal Electronic energy + Delta-G solvation = -17175.399693 eV Core-core repulsion = 14430.698925 eV Total energy + Delta-G solvation = -2744.700768 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.62068 -37.77132 -34.96178 -32.97032 -32.27156 -30.44224 -29.33790 -28.15758 -25.46060 -23.79390 -21.91773 -21.59201 -20.36986 -19.97730 -17.13794 -17.02740 -16.38421 -15.54144 -15.35966 -14.73569 -14.28786 -13.87979 -13.76709 -13.12163 -12.73935 -12.72513 -12.30456 -11.93028 -11.87028 -11.75018 -11.44480 -11.27151 -11.14305 -11.01983 -10.90162 -10.72985 -10.40092 -9.61235 -9.54376 -9.23445 -9.17742 -8.47115 -7.42556 -6.59115 -6.31257 -3.97607 2.96149 3.15847 3.18827 3.21979 3.41285 3.68532 4.09650 4.28782 4.39085 4.64899 4.79938 4.82179 5.02495 5.11519 5.38404 5.47189 5.53242 5.58849 5.62268 5.81851 5.88980 5.95324 6.20494 6.33971 6.37061 6.90689 6.98594 7.13113 7.26701 7.37020 7.66286 7.72958 7.86717 8.20899 8.40441 8.56898 8.76413 8.87836 9.11583 9.21651 10.42801 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.067534 B = 0.003891 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.504444 B = 7194.183636 C = 7338.541061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.074 3.926 3 Si 0.903 3.097 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.468 4.468 8 H 0.072 0.928 9 C 0.073 3.927 10 C -0.121 4.121 11 C -0.164 4.164 12 C 0.095 3.905 13 N -0.756 5.756 14 C 0.132 3.868 15 C 0.070 3.930 16 H 0.083 0.917 17 C -0.148 4.148 18 C -0.156 4.156 19 C 0.049 3.951 20 O -0.372 6.372 21 C -0.162 4.162 22 C -0.188 4.188 23 H 0.276 0.724 24 H 0.119 0.881 25 H 0.087 0.913 26 H 0.387 0.613 27 H 0.049 0.951 28 H 0.055 0.945 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.059 0.941 35 H 0.086 0.914 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.199 -15.869 -3.008 16.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.140 4.140 3 Si 0.728 3.272 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.499 4.499 8 H 0.090 0.910 9 C 0.070 3.930 10 C -0.141 4.141 11 C -0.186 4.186 12 C -0.002 4.002 13 N -0.392 5.392 14 C 0.006 3.994 15 C 0.012 3.988 16 H 0.101 0.899 17 C -0.186 4.186 18 C -0.194 4.194 19 C -0.028 4.028 20 O -0.292 6.292 21 C -0.185 4.185 22 C -0.209 4.209 23 H 0.086 0.914 24 H 0.137 0.863 25 H 0.105 0.895 26 H 0.220 0.780 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.077 0.923 35 H 0.104 0.896 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.318 -15.647 -3.022 16.104 hybrid contribution 0.131 0.595 0.029 0.610 sum -2.187 -15.052 -2.993 15.501 Atomic orbital electron populations 1.69861 1.07340 1.28536 1.37902 1.25788 0.94650 1.00838 0.92769 0.86407 0.80454 0.81257 0.79048 1.19573 1.20628 1.18900 1.19364 0.97919 0.91399 1.41240 0.90980 1.17487 0.92481 0.91982 0.91029 1.20926 0.98080 0.96350 0.98773 1.20051 1.01636 0.91884 1.05027 1.17379 0.95947 0.85275 1.01594 1.43765 1.35141 1.02151 1.58146 1.21380 0.96946 0.83643 0.97470 1.23020 0.99783 0.94766 0.81213 0.89932 1.23114 1.03093 0.93888 0.98537 1.23263 1.02629 0.98604 0.94885 1.23367 0.98536 0.83065 0.97796 1.88501 1.84625 1.34486 1.21567 1.19844 0.98125 0.97008 1.03493 1.20544 1.02651 0.92700 1.04967 0.91377 0.86342 0.89505 0.77979 0.93291 0.92747 0.90043 0.89834 0.90458 0.89978 0.89975 0.92268 0.89630 0.89175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.94 10.96 55.54 0.61 -21.34 16 2 C 0.07 1.96 5.13 -17.34 -0.09 1.87 16 3 Si 0.90 19.63 29.60 -169.99 -5.03 14.60 16 4 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 5 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 6 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 7 C -0.47 -13.03 9.03 -37.88 -0.34 -13.37 16 8 H 0.07 1.94 7.91 -52.48 -0.41 1.53 16 9 C 0.07 2.04 5.57 -106.79 -0.60 1.44 16 10 C -0.12 -3.29 8.64 -39.26 -0.34 -3.63 16 11 C -0.16 -4.02 9.82 -39.77 -0.39 -4.41 16 12 C 0.10 2.19 6.67 -83.69 -0.56 1.63 16 13 N -0.76 -14.26 5.67 -58.50 -0.33 -14.59 16 14 C 0.13 2.03 4.42 -4.04 -0.02 2.01 16 15 C 0.07 0.86 3.56 -26.01 -0.09 0.77 16 16 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 17 C -0.15 -1.35 6.54 -24.78 -0.16 -1.51 16 18 C -0.16 -1.23 7.16 -24.48 -0.18 -1.41 16 19 C 0.05 0.49 7.78 38.19 0.30 0.79 16 20 O -0.37 -5.14 10.99 -35.23 -0.39 -5.53 16 21 C -0.16 -3.82 9.23 -39.77 -0.37 -4.18 16 22 C -0.19 -4.83 9.74 -39.26 -0.38 -5.21 16 23 H 0.28 6.84 8.30 -40.82 -0.34 6.50 16 24 H 0.12 3.31 6.16 -52.49 -0.32 2.99 16 25 H 0.09 1.93 8.06 -52.49 -0.42 1.51 16 26 H 0.39 6.90 8.47 -40.82 -0.35 6.55 16 27 H 0.05 0.80 7.94 -51.93 -0.41 0.39 16 28 H 0.05 0.83 7.92 -51.93 -0.41 0.42 16 29 H 0.08 0.72 7.85 -51.93 -0.41 0.32 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.09 1.79 6.68 -52.49 -0.35 1.44 16 36 H 0.09 2.18 8.06 -52.48 -0.42 1.75 16 LS Contribution 298.02 15.07 4.49 4.49 Total: -1.00 -29.94 298.02 -9.05 -38.98 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -5.18 Total: 8.58 kcal Atomic # 6 Polarization: -21.99 SS G_CDS: -3.21 Total: -25.20 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: 0.28 Total: -35.93 kcal Atomic # 8 Polarization: -5.14 SS G_CDS: -0.39 Total: -5.53 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.03 Total: 14.60 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -29.94 -9.05 -38.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049537676.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.952 kcal (2) G-P(sol) polarization free energy of solvation -29.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds