Wall clock time and date at job start Mon Mar 30 2020 06:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30907 * 1 3 3 Si 1.86803 * 119.99902 * 2 1 4 4 H 1.48497 * 109.47103 * 269.99962 * 3 2 1 5 5 H 1.48502 * 109.47007 * 30.00431 * 3 2 1 6 6 H 1.48503 * 109.46999 * 150.00174 * 3 2 1 7 7 C 1.39858 * 119.99784 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00025 * 197.96528 * 7 2 1 9 9 C 1.41131 * 120.00561 * 17.96279 * 7 2 1 10 10 C 1.40888 * 120.15288 * 24.60990 * 9 7 2 11 11 C 1.36350 * 119.83615 * 179.97438 * 10 9 7 12 12 C 1.39564 * 120.16213 * 359.97438 * 11 10 9 13 13 N 1.38851 * 119.84450 * 179.97438 * 12 11 10 14 14 C 1.46499 * 120.00446 * 180.02562 * 13 12 11 15 15 C 1.52999 * 109.47501 * 179.97438 * 14 13 12 16 16 H 1.08999 * 109.82230 * 305.57356 * 15 14 13 17 17 C 1.54377 * 109.82905 * 184.58775 * 15 14 13 18 18 C 1.55311 * 102.25317 * 219.13000 * 17 15 14 19 19 C 1.54952 * 100.93840 * 34.13551 * 18 17 15 20 20 O 1.43235 * 109.82533 * 66.45332 * 15 14 13 21 21 C 1.39568 * 120.31259 * 0.27735 * 12 11 10 22 22 C 1.36339 * 120.16374 * 359.48608 * 21 12 11 23 23 H 0.96999 * 120.00245 * 359.97438 * 1 2 3 24 24 H 1.07997 * 120.08675 * 0.02562 * 10 9 7 25 25 H 1.07993 * 119.91727 * 180.02562 * 11 10 9 26 26 H 0.97005 * 119.99637 * 0.02562 * 13 12 11 27 27 H 1.08994 * 109.46995 * 300.00235 * 14 13 12 28 28 H 1.09004 * 109.46951 * 60.00059 * 14 13 12 29 29 H 1.08999 * 110.85357 * 337.32182 * 17 15 14 30 30 H 1.09003 * 110.84673 * 100.94455 * 17 15 14 31 31 H 1.09000 * 111.12682 * 276.22201 * 18 17 15 32 32 H 1.08995 * 111.12704 * 152.05106 * 18 17 15 33 33 H 1.09002 * 110.30932 * 204.64066 * 19 18 17 34 34 H 1.09001 * 110.39255 * 82.51696 * 19 18 17 35 35 H 1.08000 * 119.91991 * 179.71940 * 21 12 11 36 36 H 1.08003 * 120.08377 * 180.23245 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6178 0.0000 4 1 2.4906 2.0464 -1.4000 5 1 1.4405 2.6527 0.7001 6 1 3.5407 1.4402 0.7000 7 6 2.0083 -1.2112 -0.0005 8 1 3.0489 -1.2342 0.2879 9 6 1.3543 -2.4035 -0.3780 10 6 0.2260 -2.3557 -1.2204 11 6 -0.4005 -3.5116 -1.5814 12 6 0.0736 -4.7402 -1.1190 13 7 -0.5699 -5.9132 -1.4904 14 6 -0.0756 -7.2046 -1.0066 15 6 -0.9568 -8.3272 -1.5582 16 1 -2.0001 -8.1347 -1.3083 17 6 -0.5145 -9.6809 -0.9624 18 6 -0.6523 -10.6371 -2.1785 19 6 -0.2644 -9.6904 -3.3423 20 8 -0.8050 -8.4098 -2.9801 21 6 1.1876 -4.7947 -0.2800 22 6 1.8270 -3.6473 0.0853 23 1 -0.4850 0.8400 0.0004 24 1 -0.1412 -1.4059 -1.5800 25 1 -1.2652 -3.4765 -2.2274 26 1 -1.3468 -5.8776 -2.0702 27 1 0.9511 -7.3497 -1.3427 28 1 -0.1069 -7.2207 0.0828 29 1 0.5194 -9.6350 -0.6202 30 1 -1.1789 -9.9842 -0.1532 31 1 -1.6775 -10.9914 -2.2854 32 1 0.0441 -11.4721 -2.1026 33 1 -0.7070 -10.0376 -4.2759 34 1 0.8197 -9.6302 -3.4377 35 1 1.5463 -5.7485 0.0777 36 1 2.6912 -3.6914 0.7315 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049537676.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:20 Heat of formation + Delta-G solvation = -48.132742 kcal Electronic energy + Delta-G solvation = -17176.184647 eV Core-core repulsion = 14430.698925 eV Total energy + Delta-G solvation = -2745.485723 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.57643 -39.58674 -36.65563 -34.77883 -33.10064 -31.91881 -31.16231 -29.80804 -26.88447 -25.45376 -23.14084 -22.66909 -21.97328 -21.60230 -19.11569 -17.92206 -17.77742 -17.16188 -16.64517 -16.32553 -15.68056 -15.28499 -14.88447 -14.56045 -14.46779 -13.97999 -13.89497 -13.56079 -13.53548 -13.03054 -12.77667 -12.64749 -12.58325 -12.33459 -12.07097 -12.03456 -11.68929 -11.52570 -11.20581 -11.07447 -10.48780 -10.30939 -9.41123 -8.55056 -8.16314 -6.00707 1.09661 1.18431 1.40585 1.53497 1.59522 2.27999 2.72521 2.84249 3.09914 3.58452 3.81232 3.84906 3.97737 4.21221 4.28469 4.43097 4.46072 4.49417 4.67056 4.73189 4.83438 4.92667 4.96851 5.01955 5.07595 5.17738 5.28960 5.31022 5.41641 5.73549 5.75239 5.91812 6.10768 6.18351 6.40588 6.67888 6.88043 7.08379 7.12864 7.29358 8.48891 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.067534 B = 0.003891 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.504444 B = 7194.183636 C = 7338.541061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.031 3.969 3 Si 0.979 3.021 4 H -0.265 1.265 5 H -0.270 1.270 6 H -0.260 1.260 7 C -0.507 4.507 8 H 0.068 0.932 9 C 0.035 3.965 10 C -0.141 4.141 11 C -0.177 4.177 12 C 0.111 3.889 13 N -0.750 5.750 14 C 0.127 3.873 15 C 0.072 3.928 16 H 0.086 0.914 17 C -0.144 4.144 18 C -0.146 4.146 19 C 0.038 3.962 20 O -0.403 6.403 21 C -0.168 4.168 22 C -0.197 4.197 23 H 0.282 0.718 24 H 0.101 0.899 25 H 0.104 0.896 26 H 0.393 0.607 27 H 0.042 0.958 28 H 0.062 0.938 29 H 0.084 0.916 30 H 0.102 0.898 31 H 0.086 0.914 32 H 0.103 0.897 33 H 0.094 0.906 34 H 0.057 0.943 35 H 0.114 0.886 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.271 -17.641 -2.949 18.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.181 4.181 3 Si 0.800 3.200 4 H -0.190 1.190 5 H -0.195 1.195 6 H -0.184 1.184 7 C -0.538 4.538 8 H 0.086 0.914 9 C 0.032 3.968 10 C -0.161 4.161 11 C -0.199 4.199 12 C 0.011 3.989 13 N -0.385 5.385 14 C 0.002 3.998 15 C 0.014 3.986 16 H 0.104 0.896 17 C -0.182 4.182 18 C -0.183 4.183 19 C -0.038 4.038 20 O -0.323 6.323 21 C -0.190 4.190 22 C -0.217 4.217 23 H 0.093 0.907 24 H 0.119 0.881 25 H 0.122 0.878 26 H 0.227 0.773 27 H 0.061 0.939 28 H 0.080 0.920 29 H 0.102 0.898 30 H 0.120 0.880 31 H 0.105 0.895 32 H 0.121 0.879 33 H 0.112 0.888 34 H 0.076 0.924 35 H 0.132 0.868 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.404 -17.475 -2.973 17.889 hybrid contribution 0.101 0.953 -0.038 0.960 sum -2.304 -16.522 -3.011 16.951 Atomic orbital electron populations 1.69924 1.08790 1.29821 1.38483 1.26636 0.95472 1.04158 0.91797 0.85262 0.79028 0.76435 0.79246 1.18992 1.19480 1.18409 1.19597 0.98057 0.92759 1.43372 0.91352 1.17819 0.93563 0.93074 0.92318 1.20862 0.98843 0.96589 0.99766 1.20243 1.02218 0.91908 1.05539 1.17508 0.95262 0.86265 0.99870 1.43898 1.34772 1.02227 1.57570 1.21618 0.97299 0.82904 0.98002 1.23012 0.99237 0.95252 0.81061 0.89598 1.23134 1.03618 0.92072 0.99405 1.23251 1.03774 0.98381 0.92898 1.23602 0.98509 0.82374 0.99347 1.88470 1.84879 1.36657 1.22254 1.20102 0.98023 0.97551 1.03350 1.20761 1.03055 0.92876 1.05021 0.90732 0.88149 0.87759 0.77292 0.93934 0.91976 0.89778 0.87996 0.89506 0.87885 0.88792 0.92450 0.86768 0.88458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.92 10.96 21.81 0.24 -46.68 16 2 C 0.03 1.68 5.13 85.22 0.44 2.12 16 3 Si 0.98 40.86 29.60 68.60 2.03 42.89 16 4 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 5 H -0.27 -10.69 7.11 99.48 0.71 -9.99 16 6 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 7 C -0.51 -29.16 9.03 23.37 0.21 -28.95 16 8 H 0.07 3.81 7.91 -2.91 -0.02 3.79 16 9 C 0.04 2.02 5.57 -21.27 -0.12 1.90 16 10 C -0.14 -7.87 8.64 22.48 0.19 -7.67 16 11 C -0.18 -8.73 9.82 22.15 0.22 -8.52 16 12 C 0.11 5.00 6.67 38.67 0.26 5.26 16 13 N -0.75 -27.12 5.67 -339.00 -1.92 -29.04 16 14 C 0.13 3.64 4.42 86.38 0.38 4.02 16 15 C 0.07 1.61 3.56 31.06 0.11 1.72 16 16 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 17 C -0.14 -2.15 6.54 31.86 0.21 -1.95 16 18 C -0.15 -1.80 7.16 32.06 0.23 -1.57 16 19 C 0.04 0.67 7.78 72.65 0.57 1.23 16 20 O -0.40 -10.38 10.99 -148.98 -1.64 -12.02 16 21 C -0.17 -7.75 9.23 22.15 0.20 -7.55 16 22 C -0.20 -10.23 9.74 22.48 0.22 -10.01 16 23 H 0.28 14.29 8.30 -92.71 -0.77 13.52 16 24 H 0.10 5.88 6.16 -2.91 -0.02 5.86 16 25 H 0.10 4.65 8.06 -2.91 -0.02 4.62 16 26 H 0.39 13.40 8.47 -92.70 -0.79 12.62 16 27 H 0.04 1.30 7.94 -2.39 -0.02 1.28 16 28 H 0.06 1.72 7.92 -2.39 -0.02 1.70 16 29 H 0.08 1.23 7.85 -2.39 -0.02 1.21 16 30 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.11 4.54 6.68 -2.91 -0.02 4.52 16 36 H 0.10 4.76 8.06 -2.91 -0.02 4.74 16 Total: -1.00 -65.75 298.02 2.11 -63.63 By element: Atomic # 1 Polarization: 30.88 SS G_CDS: 0.29 Total: 31.16 kcal Atomic # 6 Polarization: -53.07 SS G_CDS: 3.12 Total: -49.95 kcal Atomic # 7 Polarization: -74.03 SS G_CDS: -1.68 Total: -75.72 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: -1.64 Total: -12.02 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 2.03 Total: 42.89 kcal Total: -65.75 2.11 -63.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049537676.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.502 kcal (2) G-P(sol) polarization free energy of solvation -65.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds