Wall clock time and date at job start Mon Mar 30 2020 06:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30909 * 1 3 3 Si 1.86802 * 119.99539 * 2 1 4 4 H 1.48503 * 109.47227 * 269.99900 * 3 2 1 5 5 H 1.48497 * 109.47574 * 30.00363 * 3 2 1 6 6 H 1.48510 * 109.46827 * 150.00227 * 3 2 1 7 7 C 1.39864 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99983 * 163.05628 * 7 2 1 9 9 C 1.41135 * 119.99703 * 343.06146 * 7 2 1 10 10 C 1.40884 * 120.15347 * 154.53542 * 9 7 2 11 11 C 1.36340 * 119.83794 * 179.97438 * 10 9 7 12 12 C 1.39570 * 120.15931 * 0.02562 * 11 10 9 13 13 N 1.38851 * 119.83930 * 179.70784 * 12 11 10 14 14 C 1.46505 * 119.99615 * 180.02562 * 13 12 11 15 15 C 1.52997 * 109.46821 * 179.97438 * 14 13 12 16 16 H 1.08999 * 110.27833 * 60.63365 * 15 14 13 17 17 C 1.54953 * 110.31110 * 182.83090 * 15 14 13 18 18 C 1.55298 * 100.94262 * 155.35823 * 17 15 14 19 19 C 1.54383 * 102.25570 * 325.86734 * 18 17 15 20 20 O 1.43235 * 107.58718 * 21.35907 * 19 18 17 21 21 C 1.39563 * 120.31275 * 359.97438 * 12 11 10 22 22 C 1.36337 * 120.16721 * 359.97438 * 21 12 11 23 23 H 0.97004 * 120.00318 * 359.97438 * 1 2 3 24 24 H 1.08001 * 120.08300 * 359.94721 * 10 9 7 25 25 H 1.08003 * 119.92153 * 179.97438 * 11 10 9 26 26 H 0.96998 * 120.00616 * 359.97438 * 13 12 11 27 27 H 1.08997 * 109.47026 * 299.99542 * 14 13 12 28 28 H 1.08994 * 109.47315 * 59.99391 * 14 13 12 29 29 H 1.08999 * 111.12098 * 273.27934 * 17 15 14 30 30 H 1.09006 * 111.12035 * 37.44107 * 17 15 14 31 31 H 1.08999 * 110.84532 * 207.67770 * 18 17 15 32 32 H 1.09002 * 111.02482 * 84.13784 * 18 17 15 33 33 H 1.09002 * 109.82938 * 261.84260 * 19 18 17 34 34 H 1.08995 * 109.83076 * 140.87105 * 19 18 17 35 35 H 1.08005 * 119.92014 * 180.02562 * 21 12 11 36 36 H 1.08000 * 120.08542 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 2.4905 2.0466 -1.4001 5 1 1.4405 2.6527 0.7001 6 1 3.5406 1.4403 0.7000 7 6 2.0084 -1.2112 -0.0005 8 1 3.0533 -1.2314 -0.2731 9 6 1.3487 -2.4071 0.3550 10 6 1.8175 -3.6447 -0.1282 11 6 1.1755 -4.7960 0.2198 12 6 0.0562 -4.7506 1.0522 13 7 -0.5962 -5.9267 1.3975 14 6 -1.7719 -5.8830 2.2706 15 6 -2.2957 -7.3034 2.4919 16 1 -1.5321 -7.9176 2.9689 17 6 -3.5820 -7.2738 3.3554 18 6 -4.2595 -8.6019 2.9207 19 6 -3.8583 -8.7030 1.4334 20 8 -2.6964 -7.8875 1.2421 21 6 -0.4138 -3.5283 1.5346 22 6 0.2188 -2.3691 1.1957 23 1 -0.4851 0.8400 0.0004 24 1 2.6831 -3.6812 -0.7731 25 1 1.5336 -5.7454 -0.1502 26 1 -0.2740 -6.7772 1.0601 27 1 -1.4963 -5.4435 3.2292 28 1 -2.5490 -5.2781 1.8035 29 1 -3.3417 -7.2849 4.4185 30 1 -4.2042 -6.4147 3.1040 31 1 -5.3424 -8.5378 3.0268 32 1 -3.8652 -9.4456 3.4871 33 1 -4.6721 -8.3404 0.8054 34 1 -3.6287 -9.7384 1.1819 35 1 -1.2804 -3.5006 2.1787 36 1 -0.1463 -1.4238 1.5694 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049537677.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:23 Heat of formation + Delta-G solvation = -29.738135 kcal Electronic energy + Delta-G solvation = -17191.000110 eV Core-core repulsion = 14446.312037 eV Total energy + Delta-G solvation = -2744.688073 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.56896 -37.77669 -34.96811 -33.00083 -32.25995 -30.39297 -29.38887 -28.17136 -25.42023 -23.73172 -21.79964 -21.70568 -20.58048 -19.77096 -17.14143 -17.00045 -16.43420 -15.47518 -15.09647 -14.89531 -14.60817 -13.84810 -13.62092 -13.01770 -12.87557 -12.62740 -12.37290 -11.95625 -11.84664 -11.70310 -11.51616 -11.26709 -11.01503 -10.98396 -10.92641 -10.69099 -10.40652 -9.64305 -9.55401 -9.22117 -9.16247 -8.45974 -7.42879 -6.56969 -6.30287 -3.97374 2.96780 3.16133 3.18311 3.23191 3.40813 3.67122 4.10243 4.30722 4.34881 4.67391 4.78993 4.84000 5.04065 5.12525 5.35547 5.47181 5.52776 5.60525 5.66933 5.84931 5.90009 5.98089 6.19840 6.34880 6.38948 6.94701 7.00000 7.03514 7.26511 7.42382 7.62271 7.75832 7.91482 8.21283 8.36326 8.56819 8.78924 8.88132 9.12269 9.21988 10.44239 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.050490 B = 0.004099 C = 0.003917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.427682 B = 6829.797770 C = 7146.091339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.074 3.926 3 Si 0.902 3.098 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.468 4.468 8 H 0.072 0.928 9 C 0.073 3.927 10 C -0.184 4.184 11 C -0.160 4.160 12 C 0.096 3.904 13 N -0.757 5.757 14 C 0.142 3.858 15 C 0.071 3.929 16 H 0.073 0.927 17 C -0.149 4.149 18 C -0.155 4.155 19 C 0.050 3.950 20 O -0.373 6.373 21 C -0.167 4.167 22 C -0.123 4.123 23 H 0.275 0.725 24 H 0.091 0.909 25 H 0.086 0.914 26 H 0.387 0.613 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.087 0.913 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.668 -12.145 6.436 15.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.499 4.499 8 H 0.090 0.910 9 C 0.070 3.930 10 C -0.205 4.205 11 C -0.183 4.183 12 C -0.001 4.001 13 N -0.392 5.392 14 C 0.016 3.984 15 C 0.013 3.987 16 H 0.091 0.909 17 C -0.187 4.187 18 C -0.193 4.193 19 C -0.027 4.027 20 O -0.292 6.292 21 C -0.189 4.189 22 C -0.143 4.143 23 H 0.086 0.914 24 H 0.109 0.891 25 H 0.104 0.896 26 H 0.220 0.780 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.103 0.897 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.105 0.895 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.897 -11.847 6.340 15.586 hybrid contribution 0.212 0.406 -0.013 0.458 sum -7.685 -11.441 6.327 15.165 Atomic orbital electron populations 1.69859 1.07324 1.28477 1.38165 1.25780 0.94649 1.00798 0.92805 0.86428 0.80602 0.81328 0.78929 1.19826 1.20394 1.18752 1.19347 0.97494 0.91262 1.41832 0.91025 1.17482 0.92554 0.91989 0.90997 1.20557 1.02579 0.92680 1.04640 1.19816 0.97991 0.97110 1.03348 1.17382 0.95363 0.85655 1.01726 1.43737 1.31995 1.06288 1.57202 1.21158 0.89045 0.93435 0.94717 1.23264 0.96014 0.94824 0.84564 0.90939 1.23254 0.96514 0.98206 1.00742 1.23111 1.01724 0.98112 0.96367 1.23101 0.88649 0.95207 0.95767 1.88506 1.45137 1.65048 1.30532 1.20079 1.01540 0.92012 1.05241 1.20921 0.98118 0.96301 0.98914 0.91421 0.89065 0.89576 0.77986 0.92376 0.92941 0.89710 0.89866 0.90087 0.90640 0.91455 0.91703 0.89516 0.86429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.02 10.96 55.54 0.61 -21.41 16 2 C 0.07 1.96 5.15 -17.34 -0.09 1.87 16 3 Si 0.90 19.59 29.59 -169.99 -5.03 14.56 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 6 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 7 C -0.47 -13.03 9.03 -37.87 -0.34 -13.37 16 8 H 0.07 1.92 7.90 -52.49 -0.41 1.51 16 9 C 0.07 2.02 5.57 -106.80 -0.59 1.43 16 10 C -0.18 -4.73 9.74 -39.26 -0.38 -5.11 16 11 C -0.16 -3.78 9.82 -39.77 -0.39 -4.17 16 12 C 0.10 2.20 6.67 -83.69 -0.56 1.64 16 13 N -0.76 -14.24 5.62 -58.50 -0.33 -14.57 16 14 C 0.14 2.23 4.62 -4.04 -0.02 2.21 16 15 C 0.07 0.89 3.51 -25.70 -0.09 0.80 16 16 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 17 C -0.15 -1.41 6.57 -24.48 -0.16 -1.57 16 18 C -0.16 -1.26 7.02 -24.79 -0.17 -1.43 16 19 C 0.05 0.51 7.79 37.88 0.30 0.80 16 20 O -0.37 -5.26 10.89 -35.23 -0.38 -5.65 16 21 C -0.17 -4.05 9.23 -39.77 -0.37 -4.41 16 22 C -0.12 -3.31 8.63 -39.27 -0.34 -3.65 16 23 H 0.28 6.84 8.30 -40.82 -0.34 6.50 16 24 H 0.09 2.20 8.06 -52.49 -0.42 1.78 16 25 H 0.09 1.80 8.06 -52.48 -0.42 1.38 16 26 H 0.39 6.83 8.41 -40.82 -0.34 6.48 16 27 H 0.06 0.88 7.93 -51.93 -0.41 0.47 16 28 H 0.05 0.89 7.92 -51.93 -0.41 0.48 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.08 0.80 8.06 -51.93 -0.42 0.38 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.09 1.91 6.68 -52.48 -0.35 1.56 16 36 H 0.12 3.27 6.19 -52.49 -0.32 2.95 16 LS Contribution 298.08 15.07 4.49 4.49 Total: -1.00 -29.92 298.08 -9.04 -38.97 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -5.19 Total: 8.57 kcal Atomic # 6 Polarization: -21.75 SS G_CDS: -3.21 Total: -24.96 kcal Atomic # 7 Polarization: -36.27 SS G_CDS: 0.28 Total: -35.99 kcal Atomic # 8 Polarization: -5.26 SS G_CDS: -0.38 Total: -5.65 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.03 Total: 14.56 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -29.92 -9.04 -38.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049537677.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.231 kcal (2) G-P(sol) polarization free energy of solvation -29.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds