Wall clock time and date at job start Mon Mar 30 2020 06:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30909 * 1 3 3 Si 1.86802 * 119.99539 * 2 1 4 4 H 1.48503 * 109.47227 * 269.99900 * 3 2 1 5 5 H 1.48497 * 109.47574 * 30.00363 * 3 2 1 6 6 H 1.48510 * 109.46827 * 150.00227 * 3 2 1 7 7 C 1.39864 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99983 * 163.05628 * 7 2 1 9 9 C 1.41135 * 119.99703 * 343.06146 * 7 2 1 10 10 C 1.40884 * 120.15347 * 154.53542 * 9 7 2 11 11 C 1.36340 * 119.83794 * 179.97438 * 10 9 7 12 12 C 1.39570 * 120.15931 * 0.02562 * 11 10 9 13 13 N 1.38851 * 119.83930 * 179.70784 * 12 11 10 14 14 C 1.46505 * 119.99615 * 180.02562 * 13 12 11 15 15 C 1.52997 * 109.46821 * 179.97438 * 14 13 12 16 16 H 1.08999 * 110.27833 * 60.63365 * 15 14 13 17 17 C 1.54953 * 110.31110 * 182.83090 * 15 14 13 18 18 C 1.55298 * 100.94262 * 155.35823 * 17 15 14 19 19 C 1.54383 * 102.25570 * 325.86734 * 18 17 15 20 20 O 1.43235 * 107.58718 * 21.35907 * 19 18 17 21 21 C 1.39563 * 120.31275 * 359.97438 * 12 11 10 22 22 C 1.36337 * 120.16721 * 359.97438 * 21 12 11 23 23 H 0.97004 * 120.00318 * 359.97438 * 1 2 3 24 24 H 1.08001 * 120.08300 * 359.94721 * 10 9 7 25 25 H 1.08003 * 119.92153 * 179.97438 * 11 10 9 26 26 H 0.96998 * 120.00616 * 359.97438 * 13 12 11 27 27 H 1.08997 * 109.47026 * 299.99542 * 14 13 12 28 28 H 1.08994 * 109.47315 * 59.99391 * 14 13 12 29 29 H 1.08999 * 111.12098 * 273.27934 * 17 15 14 30 30 H 1.09006 * 111.12035 * 37.44107 * 17 15 14 31 31 H 1.08999 * 110.84532 * 207.67770 * 18 17 15 32 32 H 1.09002 * 111.02482 * 84.13784 * 18 17 15 33 33 H 1.09002 * 109.82938 * 261.84260 * 19 18 17 34 34 H 1.08995 * 109.83076 * 140.87105 * 19 18 17 35 35 H 1.08005 * 119.92014 * 180.02562 * 21 12 11 36 36 H 1.08000 * 120.08542 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 2.4905 2.0466 -1.4001 5 1 1.4405 2.6527 0.7001 6 1 3.5406 1.4403 0.7000 7 6 2.0084 -1.2112 -0.0005 8 1 3.0533 -1.2314 -0.2731 9 6 1.3487 -2.4071 0.3550 10 6 1.8175 -3.6447 -0.1282 11 6 1.1755 -4.7960 0.2198 12 6 0.0562 -4.7506 1.0522 13 7 -0.5962 -5.9267 1.3975 14 6 -1.7719 -5.8830 2.2706 15 6 -2.2957 -7.3034 2.4919 16 1 -1.5321 -7.9176 2.9689 17 6 -3.5820 -7.2738 3.3554 18 6 -4.2595 -8.6019 2.9207 19 6 -3.8583 -8.7030 1.4334 20 8 -2.6964 -7.8875 1.2421 21 6 -0.4138 -3.5283 1.5346 22 6 0.2188 -2.3691 1.1957 23 1 -0.4851 0.8400 0.0004 24 1 2.6831 -3.6812 -0.7731 25 1 1.5336 -5.7454 -0.1502 26 1 -0.2740 -6.7772 1.0601 27 1 -1.4963 -5.4435 3.2292 28 1 -2.5490 -5.2781 1.8035 29 1 -3.3417 -7.2849 4.4185 30 1 -4.2042 -6.4147 3.1040 31 1 -5.3424 -8.5378 3.0268 32 1 -3.8652 -9.4456 3.4871 33 1 -4.6721 -8.3404 0.8054 34 1 -3.6287 -9.7384 1.1819 35 1 -1.2804 -3.5006 2.1787 36 1 -0.1463 -1.4238 1.5694 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049537677.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:23 Heat of formation + Delta-G solvation = -47.795391 kcal Electronic energy + Delta-G solvation = -17191.783131 eV Core-core repulsion = 14446.312037 eV Total energy + Delta-G solvation = -2745.471094 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.53908 -39.58982 -36.66142 -34.81582 -33.10423 -31.77436 -31.34737 -29.80014 -26.86961 -25.38134 -23.23095 -22.62112 -22.10459 -21.46142 -19.14450 -17.94029 -17.87694 -16.85133 -16.67028 -16.32559 -15.74641 -15.56076 -14.80044 -14.50104 -14.42703 -14.05725 -13.95883 -13.55104 -13.43657 -13.05301 -12.72653 -12.67662 -12.62425 -12.29221 -12.12969 -11.99107 -11.69679 -11.56823 -11.18455 -11.06272 -10.46968 -10.29819 -9.41001 -8.53035 -8.15352 -6.00563 1.11272 1.18496 1.40889 1.53408 1.60115 2.28717 2.68436 2.86091 3.05913 3.56249 3.83161 3.86433 3.99427 4.17772 4.26500 4.42428 4.45247 4.50619 4.68066 4.69889 4.84353 4.91203 5.01722 5.02229 5.05872 5.14590 5.26109 5.28477 5.46052 5.68524 5.79995 5.96153 6.10394 6.19197 6.39607 6.67807 6.87385 7.09174 7.14641 7.31008 8.50307 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.050490 B = 0.004099 C = 0.003917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.427682 B = 6829.797770 C = 7146.091339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.031 3.969 3 Si 0.978 3.022 4 H -0.265 1.265 5 H -0.268 1.268 6 H -0.261 1.261 7 C -0.507 4.507 8 H 0.068 0.932 9 C 0.034 3.966 10 C -0.194 4.194 11 C -0.168 4.168 12 C 0.111 3.889 13 N -0.749 5.749 14 C 0.137 3.863 15 C 0.074 3.926 16 H 0.083 0.917 17 C -0.146 4.146 18 C -0.145 4.145 19 C 0.039 3.961 20 O -0.405 6.405 21 C -0.176 4.176 22 C -0.141 4.141 23 H 0.282 0.718 24 H 0.098 0.902 25 H 0.115 0.885 26 H 0.396 0.604 27 H 0.067 0.933 28 H 0.038 0.962 29 H 0.105 0.895 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.105 0.895 36 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.328 -13.391 7.368 17.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.180 4.180 3 Si 0.800 3.200 4 H -0.190 1.190 5 H -0.193 1.193 6 H -0.185 1.185 7 C -0.538 4.538 8 H 0.086 0.914 9 C 0.032 3.968 10 C -0.214 4.214 11 C -0.191 4.191 12 C 0.011 3.989 13 N -0.383 5.383 14 C 0.012 3.988 15 C 0.016 3.984 16 H 0.101 0.899 17 C -0.184 4.184 18 C -0.183 4.183 19 C -0.037 4.037 20 O -0.326 6.326 21 C -0.198 4.198 22 C -0.161 4.161 23 H 0.092 0.908 24 H 0.116 0.884 25 H 0.133 0.867 26 H 0.230 0.770 27 H 0.085 0.915 28 H 0.056 0.944 29 H 0.123 0.877 30 H 0.097 0.903 31 H 0.117 0.883 32 H 0.109 0.891 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.123 0.877 36 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -8.582 -13.144 7.281 17.304 hybrid contribution 0.334 0.604 -0.304 0.754 sum -8.247 -12.541 6.977 16.552 Atomic orbital electron populations 1.69924 1.08792 1.29770 1.38787 1.26629 0.95468 1.04134 0.91807 0.85277 0.79064 0.76480 0.79225 1.19009 1.19252 1.18491 1.19594 0.97650 0.92625 1.43978 0.91364 1.17819 0.93669 0.93044 0.92305 1.20767 1.03002 0.92899 1.04727 1.20110 0.98001 0.97667 1.03276 1.17516 0.94731 0.86647 0.99982 1.43836 1.32302 1.05222 1.56984 1.21357 0.87401 0.95970 0.94075 1.23250 0.97673 0.92602 0.84862 0.89930 1.23270 0.94880 0.98930 1.01314 1.23103 1.02797 0.97721 0.94663 1.23326 0.87590 0.95250 0.97538 1.88463 1.46642 1.65818 1.31648 1.20239 1.02055 0.91831 1.05710 1.20864 0.98830 0.96585 0.99852 0.90778 0.88421 0.86710 0.77034 0.91537 0.94359 0.87688 0.90338 0.88300 0.89121 0.91458 0.90543 0.87674 0.88180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -47.11 10.96 21.82 0.24 -46.87 16 2 C 0.03 1.67 5.15 85.22 0.44 2.11 16 3 Si 0.98 40.78 29.59 68.60 2.03 42.81 16 4 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 5 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 6 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 7 C -0.51 -29.20 9.03 23.38 0.21 -28.98 16 8 H 0.07 3.80 7.90 -2.91 -0.02 3.78 16 9 C 0.03 1.98 5.57 -21.27 -0.12 1.86 16 10 C -0.19 -10.09 9.74 22.47 0.22 -9.87 16 11 C -0.17 -7.81 9.82 22.15 0.22 -7.59 16 12 C 0.11 5.00 6.67 38.67 0.26 5.25 16 13 N -0.75 -26.99 5.62 -339.00 -1.91 -28.90 16 14 C 0.14 4.08 4.62 86.38 0.40 4.48 16 15 C 0.07 1.67 3.51 31.26 0.11 1.78 16 16 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 17 C -0.15 -2.33 6.57 32.05 0.21 -2.12 16 18 C -0.15 -1.86 7.02 31.85 0.22 -1.64 16 19 C 0.04 0.71 7.79 72.45 0.56 1.27 16 20 O -0.41 -10.72 10.89 -148.98 -1.62 -12.35 16 21 C -0.18 -8.60 9.23 22.15 0.20 -8.40 16 22 C -0.14 -7.86 8.63 22.47 0.19 -7.67 16 23 H 0.28 14.29 8.30 -92.71 -0.77 13.52 16 24 H 0.10 4.80 8.06 -2.91 -0.02 4.78 16 25 H 0.11 4.59 8.06 -2.91 -0.02 4.57 16 26 H 0.40 13.13 8.41 -92.71 -0.78 12.35 16 27 H 0.07 1.89 7.93 -2.39 -0.02 1.87 16 28 H 0.04 1.26 7.92 -2.39 -0.02 1.24 16 29 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.08 1.34 8.06 -2.38 -0.02 1.32 16 31 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.11 4.62 6.68 -2.91 -0.02 4.60 16 36 H 0.10 5.82 6.19 -2.91 -0.02 5.80 16 Total: -1.00 -65.80 298.08 2.16 -63.64 By element: Atomic # 1 Polarization: 30.88 SS G_CDS: 0.29 Total: 31.17 kcal Atomic # 6 Polarization: -52.64 SS G_CDS: 3.13 Total: -49.51 kcal Atomic # 7 Polarization: -74.10 SS G_CDS: -1.67 Total: -75.77 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: -1.62 Total: -12.35 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.81 kcal Total: -65.80 2.16 -63.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049537677.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.845 kcal (2) G-P(sol) polarization free energy of solvation -65.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds