Wall clock time and date at job start Mon Mar 30 2020 05:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21257 * 120.00161 * 2 1 4 4 C 1.47181 * 120.00312 * 179.97438 * 2 1 3 5 5 C 1.39896 * 120.13263 * 359.97438 * 4 2 1 6 6 C 1.37908 * 119.96220 * 180.02562 * 5 4 2 7 7 C 1.38297 * 120.25582 * 359.74354 * 6 5 4 8 8 C 1.38985 * 120.27798 * 0.51201 * 7 6 5 9 9 N 1.39956 * 119.98891 * 179.76745 * 8 7 6 10 10 C 1.34778 * 120.00103 * 214.83066 * 9 8 7 11 11 O 1.21283 * 120.00103 * 355.38433 * 10 9 8 12 12 C 1.50708 * 120.00027 * 175.38648 * 10 9 8 13 13 C 1.50706 * 109.46866 * 180.02562 * 12 10 9 14 14 H 1.07993 * 120.00133 * 359.97438 * 13 12 10 15 15 C 1.37877 * 119.99538 * 179.97438 * 13 12 10 16 16 N 1.31518 * 119.99462 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 120.00271 * 0.02562 * 15 13 12 18 18 H 1.48495 * 109.47094 * 89.99325 * 17 15 13 19 19 H 1.48499 * 109.47069 * 209.99708 * 17 15 13 20 20 H 1.48506 * 109.46658 * 329.99577 * 17 15 13 21 21 C 1.38574 * 120.02744 * 359.49182 * 8 7 6 22 22 H 1.08997 * 109.47192 * 270.00061 * 1 2 3 23 23 H 1.09006 * 109.47289 * 30.00186 * 1 2 3 24 24 H 1.08995 * 109.46972 * 149.99860 * 1 2 3 25 25 H 1.07996 * 120.01765 * 359.97438 * 5 4 2 26 26 H 1.08006 * 119.86969 * 180.02562 * 6 5 4 27 27 H 1.08002 * 119.86371 * 180.25980 * 7 6 5 28 28 H 0.96995 * 120.00386 * 34.82416 * 9 8 7 29 29 H 1.08994 * 109.47170 * 60.00170 * 12 10 9 30 30 H 1.09002 * 109.46572 * 299.99439 * 12 10 9 31 31 H 0.97005 * 119.99438 * 180.02562 * 16 15 13 32 32 H 1.07997 * 120.12303 * 180.23603 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2429 -1.2746 0.0006 5 6 1.5463 -2.4878 0.0017 6 6 2.2395 -3.6800 0.0027 7 6 3.6224 -3.6820 -0.0026 8 6 4.3249 -2.4828 0.0016 9 7 5.7245 -2.4919 0.0011 10 6 6.4048 -1.5407 0.6711 11 8 5.8075 -0.6297 1.2042 12 6 7.9079 -1.6090 0.7576 13 6 8.4188 -0.4370 1.5555 14 1 7.7248 0.2852 1.9590 15 6 9.7725 -0.2870 1.7701 16 7 10.2184 0.7361 2.4660 17 14 10.9731 -1.5359 1.0715 18 1 11.3936 -1.1115 -0.2880 19 1 12.1647 -1.6241 1.9533 20 1 10.3153 -2.8651 0.9938 21 6 3.6402 -1.2780 0.0006 22 1 -0.3633 0.0000 1.0276 23 1 -0.3634 0.8900 -0.5139 24 1 -0.3633 -0.8899 -0.5138 25 1 0.4664 -2.4907 0.0025 26 1 1.7001 -4.6158 0.0031 27 1 4.1588 -4.6194 -0.0060 28 1 6.2048 -3.1828 -0.4813 29 1 8.3314 -1.5780 -0.2462 30 1 8.2016 -2.5374 1.2476 31 1 11.1709 0.8418 2.6167 32 1 4.1846 -0.3452 0.0000 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049815948.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:46 Heat of formation + Delta-G solvation = -46.883895 kcal Electronic energy + Delta-G solvation = -16922.079977 eV Core-core repulsion = 14040.815314 eV Total energy + Delta-G solvation = -2881.264663 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.34265 -39.15806 -37.69899 -34.40470 -32.93234 -31.62195 -30.68414 -29.72758 -28.47514 -23.96159 -23.75371 -22.13055 -19.92949 -19.69003 -17.50333 -17.05191 -16.21865 -15.96494 -15.41926 -15.21644 -14.96971 -14.63565 -14.25195 -13.85198 -13.57213 -13.25054 -12.77486 -12.50571 -12.26580 -12.18023 -11.91229 -11.68002 -11.46311 -10.88492 -10.66299 -10.16469 -10.01677 -9.72626 -9.33430 -9.07904 -8.81918 -8.62697 -8.00492 -6.07320 -4.08334 0.67685 1.39585 2.41029 3.22560 3.27477 3.31561 3.34561 3.46875 3.88526 4.06017 4.36099 4.77439 4.89524 5.01414 5.08842 5.22543 5.26368 5.31531 5.46519 5.56245 5.67274 5.86971 6.00097 6.27196 6.37451 6.41250 6.50428 6.60976 6.80140 7.12527 7.43575 7.56589 7.86790 8.48307 8.84459 9.12405 9.49457 11.05522 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.033610 B = 0.005149 C = 0.004549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.873330 B = 5436.809906 C = 6153.295092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.390 3.610 3 O -0.449 6.449 4 C -0.156 4.156 5 C -0.103 4.103 6 C -0.115 4.115 7 C -0.125 4.125 8 C 0.150 3.850 9 N -0.692 5.692 10 C 0.518 3.482 11 O -0.505 6.505 12 C -0.026 4.026 13 C -0.517 4.517 14 H 0.093 0.907 15 C 0.070 3.930 16 N -0.894 5.894 17 Si 0.875 3.125 18 H -0.275 1.275 19 H -0.284 1.284 20 H -0.267 1.267 21 C -0.067 4.067 22 H 0.096 0.904 23 H 0.086 0.914 24 H 0.085 0.915 25 H 0.130 0.870 26 H 0.129 0.871 27 H 0.128 0.872 28 H 0.408 0.592 29 H 0.046 0.954 30 H 0.050 0.950 31 H 0.265 0.735 32 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.387 -11.808 -7.801 22.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.267 3.733 3 O -0.323 6.323 4 C -0.158 4.158 5 C -0.122 4.122 6 C -0.134 4.134 7 C -0.146 4.146 8 C 0.054 3.946 9 N -0.339 5.339 10 C 0.308 3.692 11 O -0.377 6.377 12 C -0.066 4.066 13 C -0.556 4.556 14 H 0.111 0.889 15 C -0.132 4.132 16 N -0.532 5.532 17 Si 0.702 3.298 18 H -0.201 1.201 19 H -0.210 1.210 20 H -0.191 1.191 21 C -0.088 4.088 22 H 0.114 0.886 23 H 0.105 0.895 24 H 0.104 0.896 25 H 0.148 0.852 26 H 0.146 0.854 27 H 0.146 0.854 28 H 0.243 0.757 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -17.219 -10.446 -7.290 21.419 hybrid contribution 1.015 -1.192 -0.511 1.647 sum -16.204 -11.638 -7.802 21.422 Atomic orbital electron populations 1.22216 0.93883 1.04659 1.04680 1.22511 0.91523 0.87771 0.71477 1.90595 1.72059 1.34241 1.35434 1.20423 0.94059 0.94851 1.06438 1.21324 0.99773 0.91460 0.99651 1.20838 0.93434 0.98018 1.01108 1.21173 0.94650 0.96747 1.02056 1.17845 0.84136 0.93450 0.99144 1.44092 1.03580 1.32685 1.53520 1.21776 0.91866 0.79892 0.75629 1.90623 1.70358 1.32670 1.44029 1.19708 0.86475 1.00916 0.99474 1.20967 0.93337 1.08307 1.32944 0.88865 1.24970 0.97977 0.95376 0.94844 1.69897 1.14403 1.29200 1.39700 0.86878 0.81261 0.82243 0.79409 1.20057 1.21025 1.19136 1.21739 0.93014 0.99186 0.94820 0.88551 0.89548 0.89598 0.85245 0.85352 0.85405 0.75654 0.93624 0.93178 0.92483 0.82885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.67 9.75 36.00 0.35 -1.32 16 2 C 0.39 5.45 7.23 -30.68 -0.22 5.23 16 3 O -0.45 -8.37 17.09 5.58 0.10 -8.27 16 4 C -0.16 -2.22 5.87 -105.09 -0.62 -2.83 16 5 C -0.10 -1.07 9.36 -39.08 -0.37 -1.44 16 6 C -0.12 -1.14 10.02 -39.68 -0.40 -1.54 16 7 C -0.13 -1.47 9.96 -39.28 -0.39 -1.86 16 8 C 0.15 2.34 6.29 -83.75 -0.53 1.82 16 9 N -0.69 -11.29 5.34 -9.90 -0.05 -11.34 16 10 C 0.52 11.28 7.67 -10.98 -0.08 11.20 16 11 O -0.50 -13.09 12.89 5.55 0.07 -13.01 16 12 C -0.03 -0.60 4.53 -29.03 -0.13 -0.73 16 13 C -0.52 -15.08 9.48 -34.44 -0.33 -15.41 16 14 H 0.09 3.11 7.00 -52.49 -0.37 2.74 16 15 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 16 N -0.89 -27.78 13.96 55.43 0.77 -27.00 16 17 Si 0.88 20.61 27.47 -169.99 -4.67 15.94 16 18 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.27 -5.78 6.54 56.52 0.37 -5.41 16 21 C -0.07 -1.18 8.24 -38.90 -0.32 -1.50 16 22 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.09 0.50 6.47 -51.93 -0.34 0.16 16 25 H 0.13 0.88 6.35 -52.49 -0.33 0.55 16 26 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 27 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 28 H 0.41 5.04 8.82 -40.82 -0.36 4.68 16 29 H 0.05 0.97 7.57 -51.93 -0.39 0.58 16 30 H 0.05 1.08 7.20 -51.93 -0.37 0.71 16 31 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 32 H 0.15 3.28 5.81 -52.49 -0.30 2.98 16 LS Contribution 281.28 15.07 4.24 4.24 Total: -1.00 -36.16 281.28 -6.00 -42.16 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -3.33 Total: 3.74 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: -3.13 Total: -6.45 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: 0.72 Total: -38.35 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: 0.17 Total: -21.29 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.67 Total: 15.94 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -36.16 -6.00 -42.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049815948.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.722 kcal (2) G-P(sol) polarization free energy of solvation -36.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds