Wall clock time and date at job start Mon Mar 30 2020 05:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21302 * 119.99452 * 2 1 4 4 C 1.46845 * 119.99894 * 179.97438 * 2 1 3 5 5 C 1.40058 * 120.09657 * 180.02562 * 4 2 1 6 6 C 1.37086 * 119.89947 * 180.30425 * 5 4 2 7 7 C 1.39210 * 120.09623 * 359.44455 * 6 5 4 8 8 N 1.39320 * 119.89775 * 180.28224 * 7 6 5 9 9 C 1.34776 * 120.00106 * 33.74712 * 8 7 6 10 10 O 1.21272 * 119.99648 * 5.27997 * 9 8 7 11 11 C 1.50692 * 119.99951 * 185.27599 * 9 8 7 12 12 C 1.50701 * 109.47164 * 180.02562 * 11 9 8 13 13 H 1.07994 * 119.99965 * 359.97438 * 12 11 9 14 14 C 1.37875 * 120.00113 * 180.02562 * 12 11 9 15 15 N 1.31516 * 120.00227 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00006 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47064 * 90.00057 * 16 14 12 18 18 H 1.48497 * 109.47077 * 209.99694 * 16 14 12 19 19 H 1.48493 * 109.47080 * 329.99890 * 16 14 12 20 20 C 1.39218 * 120.20448 * 0.55270 * 7 6 5 21 21 C 1.37088 * 120.10079 * 359.73436 * 20 7 6 22 22 H 1.09005 * 109.47197 * 269.99980 * 1 2 3 23 23 H 1.08999 * 109.47723 * 29.99941 * 1 2 3 24 24 H 1.09006 * 109.46856 * 150.00516 * 1 2 3 25 25 H 1.08008 * 120.05299 * 0.02606 * 5 4 2 26 26 H 1.07995 * 119.94893 * 179.70464 * 6 5 4 27 27 H 0.97007 * 119.99418 * 213.74314 * 8 7 6 28 28 H 1.09007 * 109.47440 * 299.99892 * 11 9 8 29 29 H 1.08999 * 109.47430 * 60.00112 * 11 9 8 30 30 H 0.96993 * 120.00071 * 179.97438 * 15 14 12 31 31 H 1.07996 * 119.95226 * 179.69700 * 20 7 6 32 32 H 1.07997 * 120.05581 * 179.97438 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0506 0.0000 4 6 2.2412 -1.2717 0.0006 5 6 3.6418 -1.2741 0.0011 6 6 4.3231 -2.4637 -0.0047 7 6 3.6250 -3.6680 0.0006 8 7 4.3216 -4.8746 0.0006 9 6 5.5015 -4.9714 0.6448 10 8 5.9108 -4.0393 1.3038 11 6 6.3119 -6.2381 0.5463 12 6 7.5769 -6.0890 1.3518 13 1 7.7743 -5.1689 1.8816 14 6 8.4825 -7.1268 1.4114 15 7 8.2423 -8.2472 0.7657 16 14 10.0508 -6.9418 2.4092 17 1 9.8094 -7.4014 3.8005 18 1 11.1268 -7.7618 1.7968 19 1 10.4629 -5.5152 2.4236 20 6 2.2328 -3.6706 0.0002 21 6 1.5431 -2.4858 0.0000 22 1 -0.3634 0.0000 1.0277 23 1 -0.3634 0.8899 -0.5138 24 1 -0.3633 -0.8901 -0.5138 25 1 4.1843 -0.3402 0.0015 26 1 5.4031 -2.4664 -0.0091 27 1 3.9573 -5.6449 -0.4630 28 1 5.7298 -7.0732 0.9360 29 1 6.5652 -6.4272 -0.4968 30 1 8.8797 -8.9771 0.8074 31 1 1.6953 -4.6073 -0.0007 32 1 0.4631 -2.4887 -0.0008 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049815949.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:49 Heat of formation + Delta-G solvation = -55.225279 kcal Electronic energy + Delta-G solvation = -16659.189546 eV Core-core repulsion = 13777.563173 eV Total energy + Delta-G solvation = -2881.626373 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.35424 -39.30330 -37.64262 -34.38798 -33.07832 -31.65857 -30.71336 -29.51287 -28.19285 -24.44217 -22.91697 -22.60985 -20.18448 -19.63516 -17.74968 -16.67146 -16.49892 -15.90871 -15.44551 -15.04855 -14.77182 -14.54660 -14.22405 -13.86080 -13.45149 -13.15618 -12.76044 -12.67169 -12.31927 -12.23692 -12.18866 -11.39865 -11.14815 -10.87312 -10.75315 -10.10055 -10.05636 -9.82528 -9.41295 -9.11674 -8.84501 -8.53676 -7.95166 -6.16445 -4.17261 0.66389 1.45760 2.36067 3.29398 3.35074 3.35725 3.40220 3.53206 3.93197 4.04306 4.40474 4.72611 4.88696 4.92371 5.19321 5.22265 5.26141 5.35389 5.47603 5.56741 5.75302 5.91325 6.08905 6.17915 6.42389 6.46874 6.64797 6.97095 7.12260 7.14762 7.48851 7.71525 7.86805 8.17514 8.84113 8.93595 9.48625 10.95720 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.052920 B = 0.004075 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.971861 B = 6869.751621 C = 7282.362041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.398 3.602 3 O -0.470 6.470 4 C -0.213 4.213 5 C -0.035 4.035 6 C -0.143 4.143 7 C 0.205 3.795 8 N -0.690 5.690 9 C 0.513 3.487 10 O -0.516 6.516 11 C 0.007 3.993 12 C -0.514 4.514 13 H 0.076 0.924 14 C 0.057 3.943 15 N -0.899 5.899 16 Si 0.903 3.097 17 H -0.279 1.279 18 H -0.286 1.286 19 H -0.271 1.271 20 C -0.175 4.175 21 C -0.050 4.050 22 H 0.095 0.905 23 H 0.084 0.916 24 H 0.085 0.915 25 H 0.132 0.868 26 H 0.143 0.857 27 H 0.411 0.589 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.263 0.737 31 H 0.130 0.870 32 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.006 8.083 -4.146 18.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.278 3.722 3 O -0.347 6.347 4 C -0.215 4.215 5 C -0.054 4.054 6 C -0.164 4.164 7 C 0.107 3.893 8 N -0.335 5.335 9 C 0.304 3.696 10 O -0.389 6.389 11 C -0.032 4.032 12 C -0.552 4.552 13 H 0.094 0.906 14 C -0.144 4.144 15 N -0.538 5.538 16 Si 0.731 3.269 17 H -0.205 1.205 18 H -0.212 1.212 19 H -0.196 1.196 20 C -0.196 4.196 21 C -0.068 4.068 22 H 0.114 0.886 23 H 0.103 0.897 24 H 0.104 0.896 25 H 0.150 0.850 26 H 0.160 0.840 27 H 0.247 0.753 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.148 0.852 32 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -15.204 9.051 -3.689 18.074 hybrid contribution 0.555 -0.667 0.275 0.911 sum -14.649 8.383 -3.414 17.220 Atomic orbital electron populations 1.22230 0.94244 1.04628 1.04593 1.22358 0.91430 0.87747 0.70667 1.90534 1.72191 1.34471 1.37515 1.20342 0.94543 0.94502 1.12143 1.21150 0.92892 0.98326 0.93043 1.21137 1.01756 0.90610 1.02892 1.18258 0.91038 0.87066 0.92905 1.44229 1.23111 1.11584 1.54528 1.22434 0.78897 0.92193 0.76027 1.90577 1.68741 1.40933 1.38639 1.19297 0.95021 0.88659 1.00248 1.21124 1.02523 1.01479 1.30106 0.90561 1.25001 0.98707 0.95007 0.95731 1.69945 1.36776 1.04597 1.42521 0.86394 0.82198 0.78343 0.79987 1.20519 1.21176 1.19587 1.20766 0.92281 0.98959 1.07616 1.21039 0.99570 0.90992 0.95239 0.88636 0.89703 0.89594 0.84981 0.83967 0.75313 0.92992 0.92813 0.92725 0.85173 0.85029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.46 9.75 36.01 0.35 -1.11 16 2 C 0.40 4.74 7.22 -30.83 -0.22 4.52 16 3 O -0.47 -7.25 17.08 5.54 0.09 -7.16 16 4 C -0.21 -2.71 5.87 -105.05 -0.62 -3.33 16 5 C -0.04 -0.52 9.57 -39.32 -0.38 -0.90 16 6 C -0.14 -2.37 8.60 -39.64 -0.34 -2.71 16 7 C 0.21 3.14 6.27 -83.73 -0.52 2.62 16 8 N -0.69 -11.11 5.31 -9.85 -0.05 -11.16 16 9 C 0.51 10.91 7.55 -10.99 -0.08 10.82 16 10 O -0.52 -12.60 13.15 5.56 0.07 -12.53 16 11 C 0.01 0.16 5.46 -29.04 -0.16 0.01 16 12 C -0.51 -14.33 8.92 -34.44 -0.31 -14.64 16 13 H 0.08 2.22 6.75 -52.49 -0.35 1.86 16 14 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 15 N -0.90 -25.52 13.29 55.43 0.74 -24.78 16 16 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 19 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 20 C -0.18 -2.08 9.92 -39.64 -0.39 -2.47 16 21 C -0.05 -0.52 9.33 -39.32 -0.37 -0.89 16 22 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 23 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.09 0.44 6.45 -51.93 -0.34 0.11 16 25 H 0.13 1.91 7.64 -52.48 -0.40 1.51 16 26 H 0.14 2.65 6.42 -52.49 -0.34 2.31 16 27 H 0.41 5.21 8.81 -40.82 -0.36 4.85 16 28 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.05 1.29 8.14 -51.93 -0.42 0.86 16 30 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 32 H 0.13 0.90 6.34 -52.49 -0.33 0.56 16 LS Contribution 284.96 15.07 4.29 4.29 Total: -1.00 -32.82 284.96 -6.38 -39.20 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -3.37 Total: 2.15 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -3.14 Total: -6.59 kcal Atomic # 7 Polarization: -36.63 SS G_CDS: 0.68 Total: -35.95 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: 0.17 Total: -19.68 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -32.82 -6.38 -39.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049815949.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.023 kcal (2) G-P(sol) polarization free energy of solvation -32.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds