Wall clock time and date at job start Mon Mar 30 2020 05:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21302 * 119.99452 * 2 1 4 4 C 1.46845 * 119.99894 * 179.97438 * 2 1 3 5 5 C 1.40058 * 120.09657 * 180.02562 * 4 2 1 6 6 C 1.37086 * 119.89947 * 180.30425 * 5 4 2 7 7 C 1.39210 * 120.09623 * 359.44455 * 6 5 4 8 8 N 1.39320 * 119.89775 * 180.28224 * 7 6 5 9 9 C 1.34776 * 120.00106 * 33.74712 * 8 7 6 10 10 O 1.21272 * 119.99648 * 5.27997 * 9 8 7 11 11 C 1.50692 * 119.99951 * 185.27599 * 9 8 7 12 12 C 1.50701 * 109.47164 * 180.02562 * 11 9 8 13 13 H 1.07994 * 119.99965 * 359.97438 * 12 11 9 14 14 C 1.37875 * 120.00113 * 180.02562 * 12 11 9 15 15 N 1.31516 * 120.00227 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00006 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47064 * 90.00057 * 16 14 12 18 18 H 1.48497 * 109.47077 * 209.99694 * 16 14 12 19 19 H 1.48493 * 109.47080 * 329.99890 * 16 14 12 20 20 C 1.39218 * 120.20448 * 0.55270 * 7 6 5 21 21 C 1.37088 * 120.10079 * 359.73436 * 20 7 6 22 22 H 1.09005 * 109.47197 * 269.99980 * 1 2 3 23 23 H 1.08999 * 109.47723 * 29.99941 * 1 2 3 24 24 H 1.09006 * 109.46856 * 150.00516 * 1 2 3 25 25 H 1.08008 * 120.05299 * 0.02606 * 5 4 2 26 26 H 1.07995 * 119.94893 * 179.70464 * 6 5 4 27 27 H 0.97007 * 119.99418 * 213.74314 * 8 7 6 28 28 H 1.09007 * 109.47440 * 299.99892 * 11 9 8 29 29 H 1.08999 * 109.47430 * 60.00112 * 11 9 8 30 30 H 0.96993 * 120.00071 * 179.97438 * 15 14 12 31 31 H 1.07996 * 119.95226 * 179.69700 * 20 7 6 32 32 H 1.07997 * 120.05581 * 179.97438 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0506 0.0000 4 6 2.2412 -1.2717 0.0006 5 6 3.6418 -1.2741 0.0011 6 6 4.3231 -2.4637 -0.0047 7 6 3.6250 -3.6680 0.0006 8 7 4.3216 -4.8746 0.0006 9 6 5.5015 -4.9714 0.6448 10 8 5.9108 -4.0393 1.3038 11 6 6.3119 -6.2381 0.5463 12 6 7.5769 -6.0890 1.3518 13 1 7.7743 -5.1689 1.8816 14 6 8.4825 -7.1268 1.4114 15 7 8.2423 -8.2472 0.7657 16 14 10.0508 -6.9418 2.4092 17 1 9.8094 -7.4014 3.8005 18 1 11.1268 -7.7618 1.7968 19 1 10.4629 -5.5152 2.4236 20 6 2.2328 -3.6706 0.0002 21 6 1.5431 -2.4858 0.0000 22 1 -0.3634 0.0000 1.0277 23 1 -0.3634 0.8899 -0.5138 24 1 -0.3633 -0.8901 -0.5138 25 1 4.1843 -0.3402 0.0015 26 1 5.4031 -2.4664 -0.0091 27 1 3.9573 -5.6449 -0.4630 28 1 5.7298 -7.0732 0.9360 29 1 6.5652 -6.4272 -0.4968 30 1 8.8797 -8.9771 0.8074 31 1 1.6953 -4.6073 -0.0007 32 1 0.4631 -2.4887 -0.0008 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049815949.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:48 Heat of formation + Delta-G solvation = -77.217244 kcal Electronic energy + Delta-G solvation = -16660.143189 eV Core-core repulsion = 13777.563173 eV Total energy + Delta-G solvation = -2882.580016 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.62067 -40.52427 -38.90997 -35.79280 -35.16186 -32.69344 -31.88981 -31.02219 -29.40936 -26.15804 -24.30540 -23.71881 -21.55829 -20.78722 -19.04100 -18.48617 -17.79374 -17.45520 -16.71573 -16.45590 -16.08203 -15.94765 -15.42710 -15.00540 -14.81370 -14.51180 -14.24596 -13.85970 -13.77221 -13.26967 -13.00594 -12.92418 -12.83299 -12.62122 -12.20542 -12.08263 -11.50407 -11.41371 -10.87251 -10.65355 -10.59943 -10.04604 -9.17863 -8.29161 -6.36384 -0.40536 0.41068 1.29170 1.39331 1.39609 1.51985 1.81083 2.13411 2.42611 2.83358 3.07002 3.18401 3.76115 3.91680 4.15799 4.21146 4.33003 4.44451 4.56068 4.70275 4.75048 4.94857 5.00956 5.11796 5.19410 5.23613 5.30045 5.39375 5.49267 5.69013 5.93747 5.98944 6.51947 6.58838 6.76475 7.22609 7.35472 8.82723 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.052920 B = 0.004075 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.971861 B = 6869.751621 C = 7282.362041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.397 3.603 3 O -0.516 6.516 4 C -0.215 4.215 5 C -0.054 4.054 6 C -0.166 4.166 7 C 0.176 3.824 8 N -0.669 5.669 9 C 0.519 3.481 10 O -0.557 6.557 11 C 0.011 3.989 12 C -0.541 4.541 13 H 0.054 0.946 14 C 0.014 3.986 15 N -0.921 5.921 16 Si 0.962 3.038 17 H -0.271 1.271 18 H -0.273 1.273 19 H -0.276 1.276 20 C -0.158 4.158 21 C -0.029 4.029 22 H 0.116 0.884 23 H 0.090 0.910 24 H 0.118 0.882 25 H 0.119 0.881 26 H 0.106 0.894 27 H 0.429 0.571 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.268 0.732 31 H 0.169 0.831 32 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.137 7.580 -4.240 21.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.280 3.720 3 O -0.396 6.396 4 C -0.217 4.217 5 C -0.073 4.073 6 C -0.187 4.187 7 C 0.080 3.920 8 N -0.315 5.315 9 C 0.310 3.690 10 O -0.433 6.433 11 C -0.029 4.029 12 C -0.579 4.579 13 H 0.073 0.927 14 C -0.185 4.185 15 N -0.561 5.561 16 Si 0.787 3.213 17 H -0.196 1.196 18 H -0.198 1.198 19 H -0.201 1.201 20 C -0.178 4.178 21 C -0.047 4.047 22 H 0.134 0.866 23 H 0.109 0.891 24 H 0.136 0.864 25 H 0.137 0.863 26 H 0.124 0.876 27 H 0.268 0.732 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.187 0.813 32 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -18.391 8.527 -3.818 20.628 hybrid contribution 1.422 -0.444 0.258 1.512 sum -16.969 8.083 -3.560 19.129 Atomic orbital electron populations 1.22274 0.89631 1.06549 1.06366 1.23071 0.93749 0.86398 0.68788 1.90533 1.73595 1.35795 1.39640 1.20711 0.93542 0.96526 1.10872 1.21130 0.94568 0.97217 0.94396 1.20934 1.00333 0.92315 1.05128 1.18469 0.92659 0.85653 0.95204 1.43695 1.21479 1.12827 1.53526 1.21823 0.80198 0.90699 0.76298 1.90564 1.70206 1.41772 1.40787 1.19111 0.94357 0.90123 0.99276 1.21346 1.04672 1.00929 1.30952 0.92726 1.25723 1.01491 0.94682 0.96621 1.70004 1.37836 1.05042 1.43205 0.85493 0.78867 0.78019 0.78962 1.19635 1.19836 1.20142 1.21184 0.90314 1.01272 1.05044 1.21586 1.01995 0.89024 0.92108 0.86579 0.89144 0.86399 0.86255 0.87592 0.73211 0.92947 0.93175 0.92261 0.81341 0.79597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.88 9.75 71.24 0.69 -1.18 16 2 C 0.40 8.57 7.22 27.94 0.20 8.77 16 3 O -0.52 -15.80 17.08 -3.10 -0.05 -15.86 16 4 C -0.21 -5.01 5.87 -20.14 -0.12 -5.13 16 5 C -0.05 -1.66 9.57 22.44 0.21 -1.45 16 6 C -0.17 -5.78 8.60 22.23 0.19 -5.59 16 7 C 0.18 5.27 6.27 38.42 0.24 5.51 16 8 N -0.67 -21.37 5.31 -303.47 -1.61 -22.98 16 9 C 0.52 22.81 7.55 87.65 0.66 23.47 16 10 O -0.56 -28.71 13.15 -3.01 -0.04 -28.75 16 11 C 0.01 0.52 5.46 29.10 0.16 0.68 16 12 C -0.54 -31.11 8.92 25.60 0.23 -30.88 16 13 H 0.05 3.33 6.75 -2.91 -0.02 3.31 16 14 C 0.01 0.79 5.46 84.65 0.46 1.25 16 15 N -0.92 -52.50 13.29 21.45 0.28 -52.21 16 16 Si 0.96 44.73 29.54 68.60 2.03 46.76 16 17 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 18 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 19 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 20 C -0.16 -3.12 9.92 22.23 0.22 -2.90 16 21 C -0.03 -0.47 9.33 22.44 0.21 -0.26 16 22 H 0.12 0.77 8.14 -2.38 -0.02 0.76 16 23 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 24 H 0.12 0.41 6.45 -2.38 -0.02 0.40 16 25 H 0.12 3.81 7.64 -2.91 -0.02 3.79 16 26 H 0.11 4.39 6.42 -2.91 -0.02 4.37 16 27 H 0.43 10.25 8.81 -92.70 -0.82 9.43 16 28 H 0.05 2.54 8.14 -2.38 -0.02 2.52 16 29 H 0.05 2.47 8.14 -2.39 -0.02 2.45 16 30 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 31 H 0.17 2.09 8.06 -2.91 -0.02 2.07 16 32 H 0.19 1.06 6.34 -2.91 -0.02 1.04 16 Total: -1.00 -75.62 284.96 4.31 -71.31 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: 0.34 Total: 9.44 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: 3.37 Total: -7.70 kcal Atomic # 7 Polarization: -73.86 SS G_CDS: -1.33 Total: -75.19 kcal Atomic # 8 Polarization: -44.51 SS G_CDS: -0.09 Total: -44.61 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -75.62 4.31 -71.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049815949.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.909 kcal (2) G-P(sol) polarization free energy of solvation -75.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds