Wall clock time and date at job start Mon Mar 30 2020 06:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 120.00076 * 2 1 4 4 H 1.48497 * 109.47284 * 240.00015 * 3 2 1 5 5 H 1.48495 * 109.47560 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47129 * 120.00581 * 3 2 1 7 7 C 1.37879 * 119.99755 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99925 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99949 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47144 * 180.02562 * 9 7 2 11 11 N 1.46893 * 109.47344 * 179.97438 * 10 9 7 12 12 C 1.46902 * 111.00320 * 174.87002 * 11 10 9 13 13 H 1.09004 * 109.39601 * 36.02677 * 12 11 10 14 14 C 1.53070 * 109.43396 * 276.14297 * 12 11 10 15 15 C 1.53405 * 108.31317 * 191.75678 * 14 12 11 16 16 O 1.42826 * 108.38103 * 64.68417 * 15 14 12 17 17 C 1.35850 * 117.84609 * 310.75593 * 16 15 14 18 18 C 1.39141 * 118.49758 * 197.11486 * 17 16 15 19 19 C 1.37967 * 120.21399 * 180.45013 * 18 17 16 20 20 C 1.38288 * 119.95659 * 359.97438 * 19 18 17 21 21 C 1.38104 * 119.98488 * 359.89291 * 20 19 18 22 22 C 1.38367 * 121.80325 * 17.38358 * 17 16 15 23 23 H 0.97006 * 120.00152 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.47008 * 60.00220 * 9 7 2 25 25 H 1.09001 * 109.47031 * 300.00460 * 9 7 2 26 26 H 1.09007 * 109.47079 * 59.99527 * 10 9 7 27 27 H 1.09003 * 109.46849 * 300.00322 * 10 9 7 28 28 H 1.00892 * 111.00128 * 298.82680 * 11 10 9 29 29 H 1.09001 * 109.69787 * 311.45721 * 14 12 11 30 30 H 1.09002 * 109.70170 * 72.05009 * 14 12 11 31 31 H 1.09007 * 109.67932 * 184.40625 * 15 14 12 32 32 H 1.08996 * 109.68253 * 304.95774 * 15 14 12 33 33 H 1.08003 * 119.89595 * 0.72685 * 18 17 16 34 34 H 1.08000 * 120.02247 * 180.02562 * 19 18 17 35 35 H 1.08000 * 120.00403 * 179.87148 * 20 19 18 36 36 H 1.07995 * 119.84007 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6621 -0.0005 11 7 1.5105 -4.9343 0.0001 12 6 2.4301 -6.0733 -0.1225 13 1 3.3490 -5.8570 0.4225 14 6 2.7572 -6.3071 -1.5995 15 6 3.4678 -7.6606 -1.7274 16 8 2.5525 -8.6878 -1.3439 17 6 1.8808 -8.5344 -0.1731 18 6 1.2754 -9.6505 0.3961 19 6 0.5763 -9.5333 1.5797 20 6 0.4766 -8.3033 2.2039 21 6 1.0785 -7.1940 1.6432 22 6 1.7821 -7.3057 0.4555 23 1 -0.4851 0.8401 0.0004 24 1 0.6239 -2.5567 -0.8903 25 1 0.6245 -2.5570 0.8896 26 1 2.8718 -3.6044 0.8895 27 1 2.8717 -3.6044 -0.8905 28 1 0.9367 -5.0201 0.8255 29 1 1.8361 -6.3193 -2.1823 30 1 3.4109 -5.5134 -1.9612 31 1 3.7809 -7.8147 -2.7601 32 1 4.3386 -7.6814 -1.0723 33 1 1.3568 -10.6126 -0.0879 34 1 0.1080 -10.4017 2.0190 35 1 -0.0722 -8.2102 3.1294 36 1 0.9995 -6.2346 2.1328 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049855903.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:24 Heat of formation + Delta-G solvation = -21.423774 kcal Electronic energy + Delta-G solvation = -17453.305789 eV Core-core repulsion = 14708.978254 eV Total energy + Delta-G solvation = -2744.327535 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.72598 -37.49755 -36.54567 -33.48133 -31.83403 -30.66795 -30.18891 -28.59583 -25.02654 -24.08833 -23.15294 -22.00463 -20.54919 -19.77948 -17.94734 -16.64729 -16.35327 -16.03288 -15.10588 -15.01023 -14.53247 -14.24489 -14.19629 -13.65297 -13.44753 -13.13564 -12.77244 -12.30331 -12.15483 -11.85358 -11.53885 -11.19584 -10.98305 -10.85074 -10.77716 -10.61815 -10.42316 -10.00460 -9.40168 -9.19617 -8.89039 -8.36899 -8.22243 -7.81256 -6.00833 -4.03936 1.29951 1.42317 3.27944 3.32222 3.36879 3.38894 3.73533 4.40743 4.59475 4.62211 4.77340 4.80726 5.04671 5.13346 5.20848 5.32094 5.34959 5.42948 5.48168 5.61032 5.68717 5.95695 5.96940 6.21436 6.23136 6.28775 6.38860 6.47280 6.52547 6.76096 6.94178 7.42239 7.43525 7.69435 7.76748 7.90940 8.06430 8.41073 9.03069 9.59887 11.10492 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.036032 B = 0.004494 C = 0.004120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.901487 B = 6229.416604 C = 6793.840016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.053 0.947 9 C 0.027 3.973 10 C 0.064 3.936 11 N -0.682 5.682 12 C 0.128 3.872 13 H 0.051 0.949 14 C -0.149 4.149 15 C 0.063 3.937 16 O -0.319 6.319 17 C 0.137 3.863 18 C -0.153 4.153 19 C -0.091 4.091 20 C -0.151 4.151 21 C -0.081 4.081 22 C -0.151 4.151 23 H 0.261 0.739 24 H 0.026 0.974 25 H 0.013 0.987 26 H 0.016 0.984 27 H 0.059 0.941 28 H 0.339 0.661 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.108 0.892 32 H 0.061 0.939 33 H 0.128 0.872 34 H 0.126 0.874 35 H 0.123 0.877 36 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.458 -18.289 1.206 18.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.072 0.928 9 C -0.010 4.010 10 C -0.064 4.064 11 N -0.315 5.315 12 C 0.018 3.982 13 H 0.069 0.931 14 C -0.187 4.187 15 C -0.013 4.013 16 O -0.233 6.233 17 C 0.092 3.908 18 C -0.172 4.172 19 C -0.109 4.109 20 C -0.170 4.170 21 C -0.100 4.100 22 C -0.152 4.152 23 H 0.071 0.929 24 H 0.044 0.956 25 H 0.032 0.968 26 H 0.034 0.966 27 H 0.078 0.922 28 H 0.159 0.841 29 H 0.106 0.894 30 H 0.103 0.897 31 H 0.126 0.874 32 H 0.079 0.921 33 H 0.146 0.854 34 H 0.144 0.856 35 H 0.141 0.859 36 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 4.157 -18.268 0.397 18.740 hybrid contribution 0.876 1.270 0.962 1.818 sum 5.033 -16.998 1.359 17.780 Atomic orbital electron populations 1.69964 1.06040 1.26734 1.50418 1.24996 0.94833 0.99194 0.95248 0.86647 0.79568 0.83121 0.78582 1.20222 1.21239 1.20298 1.21129 0.92907 0.91014 1.51199 0.92842 1.19041 0.93973 0.90219 0.97799 1.22249 0.96998 0.88419 0.98686 1.60709 1.23154 1.01188 1.46423 1.20262 0.94333 0.88540 0.95033 0.93095 1.22259 1.02487 0.96742 0.97188 1.23020 0.90524 0.86493 1.01252 1.85953 1.54797 1.46838 1.35681 1.18672 0.93701 0.92761 0.85682 1.20552 1.02453 0.97136 0.97049 1.20891 0.97824 0.97699 0.94495 1.20998 1.02129 0.92770 1.01070 1.20912 0.95794 0.98915 0.94341 1.19971 1.03667 0.94002 0.97534 0.92902 0.95599 0.96817 0.96551 0.92236 0.84051 0.89405 0.89749 0.87410 0.92065 0.85449 0.85612 0.85864 0.85724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.95 13.29 55.43 0.74 -26.22 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -14.84 9.11 -34.44 -0.31 -15.15 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.03 0.71 5.28 -27.88 -0.15 0.56 16 10 C 0.06 1.35 5.40 -3.83 -0.02 1.32 16 11 N -0.68 -12.37 6.27 -107.88 -0.68 -13.05 16 12 C 0.13 1.96 2.65 -68.80 -0.18 1.78 16 13 H 0.05 0.78 7.87 -51.93 -0.41 0.37 16 14 C -0.15 -2.04 5.56 -26.49 -0.15 -2.19 16 15 C 0.06 0.71 7.03 37.37 0.26 0.97 16 16 O -0.32 -4.33 10.27 -19.27 -0.20 -4.53 16 17 C 0.14 1.93 6.47 -39.20 -0.25 1.68 16 18 C -0.15 -1.86 9.94 -39.35 -0.39 -2.25 16 19 C -0.09 -0.99 10.04 -39.66 -0.40 -1.39 16 20 C -0.15 -1.76 10.04 -39.61 -0.40 -2.16 16 21 C -0.08 -1.10 8.94 -39.53 -0.35 -1.45 16 22 C -0.15 -2.19 5.56 -104.45 -0.58 -2.78 16 23 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 24 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 1.23 7.50 -51.93 -0.39 0.84 16 28 H 0.34 5.96 6.25 -39.30 -0.25 5.72 16 29 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.08 1.11 7.66 -51.93 -0.40 0.72 16 31 H 0.11 0.96 8.14 -51.92 -0.42 0.53 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 34 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 35 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 36 H 0.12 1.63 6.60 -52.49 -0.35 1.28 16 LS Contribution 297.12 15.07 4.48 4.48 Total: -1.00 -31.02 297.12 -8.84 -39.86 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -5.13 Total: 2.31 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: -3.02 Total: -19.45 kcal Atomic # 7 Polarization: -39.32 SS G_CDS: 0.06 Total: -39.26 kcal Atomic # 8 Polarization: -4.33 SS G_CDS: -0.20 Total: -4.53 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.02 -8.84 -39.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049855903.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.437 kcal (2) G-P(sol) polarization free energy of solvation -31.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds