Wall clock time and date at job start Mon Mar 30 2020 06:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 120.00076 * 2 1 4 4 H 1.48497 * 109.47284 * 240.00015 * 3 2 1 5 5 H 1.48495 * 109.47560 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47129 * 120.00581 * 3 2 1 7 7 C 1.37879 * 119.99755 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99925 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99949 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47144 * 180.02562 * 9 7 2 11 11 N 1.46893 * 109.47344 * 179.97438 * 10 9 7 12 12 C 1.46902 * 111.00320 * 174.87002 * 11 10 9 13 13 H 1.09004 * 109.39601 * 36.02677 * 12 11 10 14 14 C 1.53070 * 109.43396 * 276.14297 * 12 11 10 15 15 C 1.53405 * 108.31317 * 191.75678 * 14 12 11 16 16 O 1.42826 * 108.38103 * 64.68417 * 15 14 12 17 17 C 1.35850 * 117.84609 * 310.75593 * 16 15 14 18 18 C 1.39141 * 118.49758 * 197.11486 * 17 16 15 19 19 C 1.37967 * 120.21399 * 180.45013 * 18 17 16 20 20 C 1.38288 * 119.95659 * 359.97438 * 19 18 17 21 21 C 1.38104 * 119.98488 * 359.89291 * 20 19 18 22 22 C 1.38367 * 121.80325 * 17.38358 * 17 16 15 23 23 H 0.97006 * 120.00152 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.47008 * 60.00220 * 9 7 2 25 25 H 1.09001 * 109.47031 * 300.00460 * 9 7 2 26 26 H 1.09007 * 109.47079 * 59.99527 * 10 9 7 27 27 H 1.09003 * 109.46849 * 300.00322 * 10 9 7 28 28 H 1.00892 * 111.00128 * 298.82680 * 11 10 9 29 29 H 1.09001 * 109.69787 * 311.45721 * 14 12 11 30 30 H 1.09002 * 109.70170 * 72.05009 * 14 12 11 31 31 H 1.09007 * 109.67932 * 184.40625 * 15 14 12 32 32 H 1.08996 * 109.68253 * 304.95774 * 15 14 12 33 33 H 1.08003 * 119.89595 * 0.72685 * 18 17 16 34 34 H 1.08000 * 120.02247 * 180.02562 * 19 18 17 35 35 H 1.08000 * 120.00403 * 179.87148 * 20 19 18 36 36 H 1.07995 * 119.84007 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6621 -0.0005 11 7 1.5105 -4.9343 0.0001 12 6 2.4301 -6.0733 -0.1225 13 1 3.3490 -5.8570 0.4225 14 6 2.7572 -6.3071 -1.5995 15 6 3.4678 -7.6606 -1.7274 16 8 2.5525 -8.6878 -1.3439 17 6 1.8808 -8.5344 -0.1731 18 6 1.2754 -9.6505 0.3961 19 6 0.5763 -9.5333 1.5797 20 6 0.4766 -8.3033 2.2039 21 6 1.0785 -7.1940 1.6432 22 6 1.7821 -7.3057 0.4555 23 1 -0.4851 0.8401 0.0004 24 1 0.6239 -2.5567 -0.8903 25 1 0.6245 -2.5570 0.8896 26 1 2.8718 -3.6044 0.8895 27 1 2.8717 -3.6044 -0.8905 28 1 0.9367 -5.0201 0.8255 29 1 1.8361 -6.3193 -2.1823 30 1 3.4109 -5.5134 -1.9612 31 1 3.7809 -7.8147 -2.7601 32 1 4.3386 -7.6814 -1.0723 33 1 1.3568 -10.6126 -0.0879 34 1 0.1080 -10.4017 2.0190 35 1 -0.0722 -8.2102 3.1294 36 1 0.9995 -6.2346 2.1328 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049855903.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:24 Heat of formation + Delta-G solvation = -40.970623 kcal Electronic energy + Delta-G solvation = -17454.153404 eV Core-core repulsion = 14708.978254 eV Total energy + Delta-G solvation = -2745.175150 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.73769 -38.45422 -37.92571 -35.40887 -33.47129 -31.68049 -31.18488 -30.32208 -26.62745 -25.33718 -24.39434 -23.13403 -22.35604 -20.83596 -18.97713 -18.51876 -17.62398 -17.11375 -16.58622 -16.38943 -15.98253 -15.57346 -15.28903 -14.85815 -14.68328 -14.43951 -14.19036 -13.90352 -13.49770 -13.12977 -12.86921 -12.85019 -12.55215 -12.47843 -12.04573 -11.89564 -11.74754 -11.60161 -11.39101 -11.16579 -10.57399 -9.94399 -9.39550 -9.05572 -8.21083 -6.33239 0.32996 0.45707 1.40077 1.43316 1.51362 2.34977 2.40012 2.76154 3.12383 3.27240 3.55084 3.72929 3.81850 4.08095 4.14127 4.22979 4.34672 4.45372 4.51533 4.54805 4.57590 4.63957 4.71030 4.92817 5.01177 5.02965 5.15183 5.34134 5.41831 5.49448 5.57753 5.63417 5.76024 5.85733 6.09510 6.21927 6.43061 6.45898 6.83680 7.36292 8.90973 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.036032 B = 0.004494 C = 0.004120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.901487 B = 6229.416604 C = 6793.840016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.968 3.032 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.546 4.546 8 H 0.062 0.938 9 C 0.034 3.966 10 C 0.084 3.916 11 N -0.689 5.689 12 C 0.128 3.872 13 H 0.052 0.948 14 C -0.147 4.147 15 C 0.065 3.935 16 O -0.328 6.328 17 C 0.120 3.880 18 C -0.158 4.158 19 C -0.083 4.083 20 C -0.153 4.153 21 C -0.099 4.099 22 C -0.172 4.172 23 H 0.264 0.736 24 H -0.007 1.007 25 H -0.011 1.011 26 H 0.021 0.979 27 H 0.063 0.937 28 H 0.340 0.660 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.136 0.864 32 H 0.074 0.926 33 H 0.147 0.853 34 H 0.161 0.839 35 H 0.146 0.854 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.583 -19.338 1.504 20.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.792 3.208 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.584 4.584 8 H 0.080 0.920 9 C -0.004 4.004 10 C -0.044 4.044 11 N -0.322 5.322 12 C 0.019 3.981 13 H 0.070 0.930 14 C -0.185 4.185 15 C -0.010 4.010 16 O -0.242 6.242 17 C 0.074 3.926 18 C -0.177 4.177 19 C -0.101 4.101 20 C -0.171 4.171 21 C -0.117 4.117 22 C -0.173 4.173 23 H 0.073 0.927 24 H 0.011 0.989 25 H 0.008 0.992 26 H 0.039 0.961 27 H 0.081 0.919 28 H 0.160 0.840 29 H 0.086 0.914 30 H 0.106 0.894 31 H 0.153 0.847 32 H 0.092 0.908 33 H 0.164 0.836 34 H 0.179 0.821 35 H 0.164 0.836 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 5.296 -19.339 0.694 20.063 hybrid contribution 0.462 1.515 0.895 1.820 sum 5.758 -17.824 1.590 18.798 Atomic orbital electron populations 1.70109 1.07906 1.27904 1.51271 1.25984 0.95739 1.03412 0.94527 0.85463 0.78229 0.77885 0.79232 1.19082 1.20833 1.19090 1.21573 0.93556 0.92131 1.51176 0.91995 1.18888 0.94266 0.92240 0.94972 1.21852 0.95548 0.88037 0.98999 1.60635 1.23793 1.01163 1.46652 1.20303 0.93704 0.87856 0.96237 0.93033 1.22232 1.01966 0.98626 0.95708 1.23177 0.90094 0.84480 1.03199 1.85937 1.55203 1.47414 1.35647 1.18940 0.94468 0.93154 0.86004 1.20910 1.01923 0.97386 0.97469 1.21317 0.96580 0.98490 0.93699 1.21325 1.01513 0.92485 1.01772 1.21038 0.96597 0.99618 0.94474 1.19958 1.05028 0.93922 0.98382 0.92723 0.98886 0.99220 0.96125 0.91850 0.83985 0.91383 0.89417 0.84652 0.90800 0.83571 0.82145 0.83605 0.86231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.44 13.29 21.45 0.28 -57.15 16 2 C 0.00 0.09 5.46 84.66 0.46 0.55 16 3 Si 0.97 44.27 29.54 68.60 2.03 46.30 16 4 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 7 C -0.55 -31.34 9.11 25.60 0.23 -31.11 16 8 H 0.06 3.37 7.74 -2.91 -0.02 3.34 16 9 C 0.03 1.84 5.28 29.85 0.16 1.99 16 10 C 0.08 3.59 5.40 86.30 0.47 4.05 16 11 N -0.69 -25.72 6.27 -495.22 -3.11 -28.82 16 12 C 0.13 3.95 2.65 44.21 0.12 4.06 16 13 H 0.05 1.57 7.87 -2.39 -0.02 1.55 16 14 C -0.15 -4.01 5.56 30.75 0.17 -3.84 16 15 C 0.07 1.39 7.03 72.12 0.51 1.90 16 16 O -0.33 -8.49 10.27 -91.87 -0.94 -9.43 16 17 C 0.12 3.24 6.47 22.52 0.15 3.39 16 18 C -0.16 -3.51 9.94 22.42 0.22 -3.29 16 19 C -0.08 -1.58 10.04 22.22 0.22 -1.35 16 20 C -0.15 -3.28 10.04 22.25 0.22 -3.06 16 21 C -0.10 -2.64 8.94 22.30 0.20 -2.44 16 22 C -0.17 -4.97 5.56 -19.75 -0.11 -5.08 16 23 H 0.26 15.28 8.31 -92.70 -0.77 14.51 16 24 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 25 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 26 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 27 H 0.06 2.63 7.50 -2.39 -0.02 2.61 16 28 H 0.34 12.43 6.25 -89.70 -0.56 11.87 16 29 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.09 2.28 7.66 -2.39 -0.02 2.26 16 31 H 0.14 2.09 8.14 -2.38 -0.02 2.08 16 32 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 34 H 0.16 1.90 8.06 -2.91 -0.02 1.87 16 35 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 36 H 0.12 3.20 6.60 -2.91 -0.02 3.18 16 Total: -1.00 -67.49 297.12 1.79 -65.71 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: 0.51 Total: 17.63 kcal Atomic # 6 Polarization: -37.24 SS G_CDS: 3.02 Total: -34.22 kcal Atomic # 7 Polarization: -83.16 SS G_CDS: -2.82 Total: -85.98 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: -0.94 Total: -9.43 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -67.49 1.79 -65.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049855903.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.737 kcal (2) G-P(sol) polarization free energy of solvation -67.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds