Wall clock time and date at job start Mon Mar 30 2020 06:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 120.00002 * 2 1 4 4 H 1.48504 * 109.47083 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47023 * 299.99873 * 3 2 1 6 6 H 1.48492 * 109.47299 * 60.00041 * 3 2 1 7 7 C 1.37880 * 119.99780 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99959 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00015 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47059 * 180.02562 * 9 7 2 11 11 N 1.46895 * 109.47264 * 180.02562 * 10 9 7 12 12 C 1.46902 * 111.00266 * 174.81542 * 11 10 9 13 13 H 1.09003 * 109.43674 * 326.09322 * 12 11 10 14 14 C 1.53081 * 109.43913 * 86.01293 * 12 11 10 15 15 C 1.53408 * 108.27454 * 168.32440 * 14 12 11 16 16 O 1.42826 * 108.38711 * 295.25720 * 15 14 12 17 17 C 1.35843 * 117.88082 * 49.07312 * 16 15 14 18 18 C 1.39141 * 118.50560 * 163.06392 * 17 16 15 19 19 C 1.37809 * 120.25576 * 179.67884 * 18 17 16 20 20 C 1.38297 * 119.94613 * 0.09973 * 19 18 17 21 21 C 1.38103 * 119.98021 * 0.02562 * 20 19 18 22 22 C 1.38317 * 121.78675 * 342.96267 * 17 16 15 23 23 H 0.97003 * 119.99600 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47236 * 300.00018 * 9 7 2 25 25 H 1.09000 * 109.47277 * 60.00166 * 9 7 2 26 26 H 1.08999 * 109.46944 * 299.99993 * 10 9 7 27 27 H 1.09000 * 109.47108 * 59.99857 * 10 9 7 28 28 H 1.00907 * 111.00005 * 298.76496 * 11 10 9 29 29 H 1.08999 * 109.70184 * 288.01796 * 14 12 11 30 30 H 1.08996 * 109.70064 * 48.58613 * 14 12 11 31 31 H 1.08996 * 109.68722 * 54.98676 * 15 14 12 32 32 H 1.09007 * 109.68074 * 175.50061 * 15 14 12 33 33 H 1.08001 * 119.89185 * 359.74752 * 18 17 16 34 34 H 1.07996 * 120.03688 * 180.02562 * 19 18 17 35 35 H 1.07995 * 120.00899 * 180.02562 * 20 19 18 36 36 H 1.07995 * 119.84168 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5107 -4.9342 -0.0012 12 6 2.4304 -6.0731 -0.1251 13 1 3.2747 -5.7907 -0.7540 14 6 2.9394 -6.4703 1.2629 15 6 3.6523 -7.8235 1.1447 16 8 2.6898 -8.8083 0.7661 17 6 1.8729 -8.5281 -0.2826 18 6 1.1904 -9.5766 -0.8914 19 6 0.3473 -9.3324 -1.9538 20 6 0.1794 -8.0409 -2.4192 21 6 0.8570 -6.9977 -1.8193 22 6 1.7056 -7.2375 -0.7511 23 1 -0.4850 0.8401 0.0004 24 1 0.6247 -2.5571 0.8897 25 1 0.6240 -2.5567 -0.8903 26 1 2.8718 -3.6043 -0.8905 27 1 2.8719 -3.6043 0.8894 28 1 0.9371 -5.0210 0.8244 29 1 3.6381 -5.7173 1.6274 30 1 2.0991 -6.5558 1.9518 31 1 4.4328 -7.7623 0.3863 32 1 4.0937 -8.0909 2.1049 33 1 1.3208 -10.5858 -0.5296 34 1 -0.1810 -10.1488 -2.4235 35 1 -0.4813 -7.8483 -3.2514 36 1 0.7245 -5.9901 -2.1848 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049855904.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:27 Heat of formation + Delta-G solvation = -23.796151 kcal Electronic energy + Delta-G solvation = -17450.174896 eV Core-core repulsion = 14705.744487 eV Total energy + Delta-G solvation = -2744.430409 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.65922 -37.38490 -36.58572 -33.49277 -31.83298 -30.56967 -30.04084 -28.56878 -24.99685 -23.84351 -23.20807 -21.99701 -20.70536 -19.87817 -17.66764 -16.63183 -16.35744 -15.99789 -15.33908 -14.69296 -14.41558 -14.31471 -14.03295 -13.65093 -13.32791 -13.06075 -12.61263 -12.47138 -12.12395 -11.77156 -11.44382 -11.24288 -11.07906 -10.96688 -10.84813 -10.62578 -10.36436 -10.04397 -9.43250 -9.16055 -8.67184 -8.38051 -8.07136 -7.89482 -6.02124 -4.04983 1.44561 1.56680 3.29365 3.29836 3.36918 3.40456 3.87326 4.39517 4.55362 4.70090 4.73525 4.87298 5.08211 5.16714 5.22378 5.34024 5.36656 5.53259 5.56755 5.61667 5.67469 5.91393 6.00220 6.18333 6.23943 6.33061 6.41906 6.66008 6.75091 6.90340 6.92919 7.41274 7.50083 7.69000 7.75932 7.89995 8.05081 8.40157 9.02569 9.59103 11.09261 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.035259 B = 0.004530 C = 0.004128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.924536 B = 6179.692394 C = 6781.745465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.026 3.974 10 C 0.066 3.934 11 N -0.678 5.678 12 C 0.129 3.871 13 H 0.086 0.914 14 C -0.190 4.190 15 C 0.067 3.933 16 O -0.321 6.321 17 C 0.128 3.872 18 C -0.161 4.161 19 C -0.091 4.091 20 C -0.162 4.162 21 C -0.050 4.050 22 C -0.148 4.148 23 H 0.260 0.740 24 H 0.014 0.986 25 H 0.025 0.975 26 H 0.058 0.942 27 H 0.017 0.983 28 H 0.340 0.660 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.104 0.896 33 H 0.124 0.876 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.368 -17.734 -0.698 18.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.011 4.011 10 C -0.062 4.062 11 N -0.308 5.308 12 C 0.018 3.982 13 H 0.104 0.896 14 C -0.229 4.229 15 C -0.009 4.009 16 O -0.235 6.235 17 C 0.083 3.917 18 C -0.179 4.179 19 C -0.109 4.109 20 C -0.180 4.180 21 C -0.068 4.068 22 C -0.150 4.150 23 H 0.070 0.930 24 H 0.032 0.968 25 H 0.044 0.956 26 H 0.077 0.923 27 H 0.035 0.965 28 H 0.158 0.842 29 H 0.103 0.897 30 H 0.097 0.903 31 H 0.081 0.919 32 H 0.122 0.878 33 H 0.142 0.858 34 H 0.141 0.859 35 H 0.139 0.861 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 4.088 -17.720 -1.257 18.228 hybrid contribution 0.864 1.216 0.930 1.758 sum 4.952 -16.504 -0.327 17.234 Atomic orbital electron populations 1.69986 1.06036 1.26506 1.50624 1.25001 0.94827 0.99218 0.95269 0.86541 0.80054 0.83808 0.77613 1.19786 1.20953 1.21021 1.21203 0.92981 0.91009 1.50912 0.92749 1.19052 0.93994 0.90265 0.97801 1.22229 0.96976 0.88350 0.98674 1.60625 1.22862 1.01211 1.46070 1.20331 0.94271 0.89737 0.93831 0.89564 1.23019 1.02223 0.97941 0.99707 1.22896 0.89614 0.87361 1.01008 1.85941 1.46681 1.44350 1.46538 1.18760 0.92340 0.92666 0.87916 1.20434 1.01371 0.97723 0.98394 1.20843 0.97305 0.97047 0.95692 1.21100 1.02215 0.92836 1.01855 1.21074 0.92842 0.99770 0.93142 1.19898 1.02776 0.92459 0.99837 0.93020 0.96786 0.95622 0.92307 0.96510 0.84193 0.89714 0.90323 0.91882 0.87791 0.85807 0.85918 0.86095 0.84519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.80 13.29 55.43 0.74 -26.06 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.52 -14.66 9.11 -34.44 -0.31 -14.97 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.03 0.68 5.28 -27.88 -0.15 0.53 16 10 C 0.07 1.33 5.46 -3.83 -0.02 1.31 16 11 N -0.68 -11.76 5.43 -107.88 -0.59 -12.35 16 12 C 0.13 1.89 2.60 -68.79 -0.18 1.71 16 13 H 0.09 1.28 7.70 -51.93 -0.40 0.88 16 14 C -0.19 -2.37 5.54 -26.48 -0.15 -2.51 16 15 C 0.07 0.73 7.03 37.37 0.26 1.00 16 16 O -0.32 -4.32 10.27 -19.25 -0.20 -4.51 16 17 C 0.13 1.81 6.47 -39.22 -0.25 1.56 16 18 C -0.16 -2.02 9.93 -39.40 -0.39 -2.42 16 19 C -0.09 -1.05 10.03 -39.72 -0.40 -1.45 16 20 C -0.16 -2.04 10.05 -39.61 -0.40 -2.44 16 21 C -0.05 -0.73 9.27 -39.53 -0.37 -1.10 16 22 C -0.15 -2.18 5.56 -104.46 -0.58 -2.76 16 23 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 24 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.06 1.19 7.92 -51.93 -0.41 0.78 16 27 H 0.02 0.33 8.00 -51.93 -0.42 -0.09 16 28 H 0.34 5.85 8.36 -39.29 -0.33 5.52 16 29 H 0.08 1.01 8.01 -51.93 -0.42 0.59 16 30 H 0.08 1.03 7.90 -51.93 -0.41 0.62 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 34 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 35 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 36 H 0.14 2.13 7.69 -52.49 -0.40 1.72 16 LS Contribution 300.00 15.07 4.52 4.52 Total: -1.00 -30.33 300.00 -8.86 -39.19 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -5.29 Total: 2.69 kcal Atomic # 6 Polarization: -16.95 SS G_CDS: -3.03 Total: -19.98 kcal Atomic # 7 Polarization: -38.56 SS G_CDS: 0.15 Total: -38.41 kcal Atomic # 8 Polarization: -4.32 SS G_CDS: -0.20 Total: -4.51 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.33 -8.86 -39.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049855904.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.393 kcal (2) G-P(sol) polarization free energy of solvation -30.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds