Wall clock time and date at job start Mon Mar 30 2020 06:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 120.00002 * 2 1 4 4 H 1.48504 * 109.47083 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47023 * 299.99873 * 3 2 1 6 6 H 1.48492 * 109.47299 * 60.00041 * 3 2 1 7 7 C 1.37880 * 119.99780 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99959 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00015 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47059 * 180.02562 * 9 7 2 11 11 N 1.46895 * 109.47264 * 180.02562 * 10 9 7 12 12 C 1.46902 * 111.00266 * 174.81542 * 11 10 9 13 13 H 1.09003 * 109.43674 * 326.09322 * 12 11 10 14 14 C 1.53081 * 109.43913 * 86.01293 * 12 11 10 15 15 C 1.53408 * 108.27454 * 168.32440 * 14 12 11 16 16 O 1.42826 * 108.38711 * 295.25720 * 15 14 12 17 17 C 1.35843 * 117.88082 * 49.07312 * 16 15 14 18 18 C 1.39141 * 118.50560 * 163.06392 * 17 16 15 19 19 C 1.37809 * 120.25576 * 179.67884 * 18 17 16 20 20 C 1.38297 * 119.94613 * 0.09973 * 19 18 17 21 21 C 1.38103 * 119.98021 * 0.02562 * 20 19 18 22 22 C 1.38317 * 121.78675 * 342.96267 * 17 16 15 23 23 H 0.97003 * 119.99600 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47236 * 300.00018 * 9 7 2 25 25 H 1.09000 * 109.47277 * 60.00166 * 9 7 2 26 26 H 1.08999 * 109.46944 * 299.99993 * 10 9 7 27 27 H 1.09000 * 109.47108 * 59.99857 * 10 9 7 28 28 H 1.00907 * 111.00005 * 298.76496 * 11 10 9 29 29 H 1.08999 * 109.70184 * 288.01796 * 14 12 11 30 30 H 1.08996 * 109.70064 * 48.58613 * 14 12 11 31 31 H 1.08996 * 109.68722 * 54.98676 * 15 14 12 32 32 H 1.09007 * 109.68074 * 175.50061 * 15 14 12 33 33 H 1.08001 * 119.89185 * 359.74752 * 18 17 16 34 34 H 1.07996 * 120.03688 * 180.02562 * 19 18 17 35 35 H 1.07995 * 120.00899 * 180.02562 * 20 19 18 36 36 H 1.07995 * 119.84168 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5107 -4.9342 -0.0012 12 6 2.4304 -6.0731 -0.1251 13 1 3.2747 -5.7907 -0.7540 14 6 2.9394 -6.4703 1.2629 15 6 3.6523 -7.8235 1.1447 16 8 2.6898 -8.8083 0.7661 17 6 1.8729 -8.5281 -0.2826 18 6 1.1904 -9.5766 -0.8914 19 6 0.3473 -9.3324 -1.9538 20 6 0.1794 -8.0409 -2.4192 21 6 0.8570 -6.9977 -1.8193 22 6 1.7056 -7.2375 -0.7511 23 1 -0.4850 0.8401 0.0004 24 1 0.6247 -2.5571 0.8897 25 1 0.6240 -2.5567 -0.8903 26 1 2.8718 -3.6043 -0.8905 27 1 2.8719 -3.6043 0.8894 28 1 0.9371 -5.0210 0.8244 29 1 3.6381 -5.7173 1.6274 30 1 2.0991 -6.5558 1.9518 31 1 4.4328 -7.7623 0.3863 32 1 4.0937 -8.0909 2.1049 33 1 1.3208 -10.5858 -0.5296 34 1 -0.1810 -10.1488 -2.4235 35 1 -0.4813 -7.8483 -3.2514 36 1 0.7245 -5.9901 -2.1848 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049855904.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:27 Heat of formation + Delta-G solvation = -42.383849 kcal Electronic energy + Delta-G solvation = -17450.980920 eV Core-core repulsion = 14705.744487 eV Total energy + Delta-G solvation = -2745.236432 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.68168 -38.36067 -37.95082 -35.40384 -33.45093 -31.56512 -31.12927 -30.24679 -26.61230 -25.05019 -24.47442 -23.09340 -22.50598 -20.95666 -18.70961 -18.46793 -17.65667 -17.02994 -16.68384 -16.38433 -15.78442 -15.63134 -15.20173 -14.72716 -14.61816 -14.29255 -14.19286 -13.73841 -13.56214 -13.20340 -12.89429 -12.81510 -12.45769 -12.40468 -12.27738 -11.95262 -11.74240 -11.63097 -11.36016 -11.12122 -10.57741 -9.71963 -9.31118 -9.07975 -8.21021 -6.32604 0.43000 0.53809 1.40159 1.40626 1.53728 2.36584 2.40139 2.84165 3.12838 3.26531 3.66560 3.73369 3.84222 4.09864 4.17048 4.28883 4.38316 4.44802 4.56628 4.59119 4.62821 4.69456 4.70356 4.92864 4.98050 5.06014 5.17934 5.41387 5.43517 5.62601 5.65821 5.70010 5.78597 5.92443 6.11792 6.24544 6.44633 6.51584 6.85250 7.37038 8.91391 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.035259 B = 0.004530 C = 0.004128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.924536 B = 6179.692394 C = 6781.745465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.967 3.033 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.033 3.967 10 C 0.087 3.913 11 N -0.684 5.684 12 C 0.130 3.870 13 H 0.083 0.917 14 C -0.184 4.184 15 C 0.067 3.933 16 O -0.328 6.328 17 C 0.116 3.884 18 C -0.165 4.165 19 C -0.083 4.083 20 C -0.165 4.165 21 C -0.071 4.071 22 C -0.165 4.165 23 H 0.263 0.737 24 H -0.010 1.010 25 H -0.007 1.007 26 H 0.058 0.942 27 H 0.025 0.975 28 H 0.339 0.661 29 H 0.092 0.908 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.133 0.867 33 H 0.144 0.856 34 H 0.157 0.843 35 H 0.139 0.861 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.615 -18.853 -0.566 19.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.791 3.209 4 H -0.185 1.185 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.581 4.581 8 H 0.080 0.920 9 C -0.005 4.005 10 C -0.042 4.042 11 N -0.313 5.313 12 C 0.020 3.980 13 H 0.101 0.899 14 C -0.223 4.223 15 C -0.009 4.009 16 O -0.243 6.243 17 C 0.071 3.929 18 C -0.183 4.183 19 C -0.101 4.101 20 C -0.183 4.183 21 C -0.090 4.090 22 C -0.166 4.166 23 H 0.072 0.928 24 H 0.008 0.992 25 H 0.011 0.989 26 H 0.077 0.923 27 H 0.043 0.957 28 H 0.157 0.843 29 H 0.110 0.890 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.151 0.849 33 H 0.162 0.838 34 H 0.175 0.825 35 H 0.156 0.844 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 5.350 -18.860 -1.124 19.636 hybrid contribution 0.424 1.487 0.862 1.770 sum 5.774 -17.373 -0.262 18.310 Atomic orbital electron populations 1.70124 1.07881 1.27719 1.51530 1.25974 0.95723 1.03383 0.94630 0.85376 0.79086 0.78663 0.77761 1.18451 1.20443 1.20365 1.21641 0.93561 0.92179 1.50763 0.92023 1.18899 0.94311 0.92262 0.94983 1.21808 0.95452 0.87924 0.98977 1.60484 1.23530 1.01067 1.46224 1.20337 0.93616 0.88745 0.95326 0.89884 1.22932 1.02246 0.99306 0.97806 1.23101 0.89095 0.85880 1.02791 1.85932 1.46996 1.45070 1.46295 1.18958 0.92927 0.92694 0.88305 1.20797 1.00850 0.98314 0.98344 1.21225 0.96492 0.97405 0.94973 1.21353 1.01937 0.92931 1.02124 1.21058 0.94259 0.99604 0.94064 1.19895 1.03538 0.92843 1.00327 0.92775 0.99206 0.98872 0.92312 0.95676 0.84278 0.88996 0.91024 0.90911 0.84934 0.83832 0.82530 0.84361 0.86523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.19 13.29 21.45 0.28 -56.91 16 2 C 0.00 0.05 5.46 84.65 0.46 0.51 16 3 Si 0.97 44.16 29.54 68.60 2.03 46.18 16 4 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 7 C -0.54 -30.89 9.11 25.60 0.23 -30.66 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 9 C 0.03 1.76 5.28 29.85 0.16 1.92 16 10 C 0.09 3.59 5.46 86.30 0.47 4.06 16 11 N -0.68 -24.35 5.43 -495.21 -2.69 -27.04 16 12 C 0.13 3.80 2.60 44.22 0.12 3.92 16 13 H 0.08 2.46 7.70 -2.39 -0.02 2.44 16 14 C -0.18 -4.40 5.54 30.76 0.17 -4.23 16 15 C 0.07 1.32 7.03 72.12 0.51 1.83 16 16 O -0.33 -8.24 10.27 -91.79 -0.94 -9.18 16 17 C 0.12 3.14 6.47 22.51 0.15 3.29 16 18 C -0.16 -3.78 9.93 22.39 0.22 -3.56 16 19 C -0.08 -1.72 10.03 22.18 0.22 -1.50 16 20 C -0.17 -3.99 10.05 22.25 0.22 -3.77 16 21 C -0.07 -2.11 9.27 22.30 0.21 -1.90 16 22 C -0.16 -4.82 5.56 -19.76 -0.11 -4.93 16 23 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 24 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 25 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 26 H 0.06 2.41 7.92 -2.39 -0.02 2.39 16 27 H 0.03 0.99 8.00 -2.39 -0.02 0.97 16 28 H 0.34 12.07 8.36 -89.69 -0.75 11.32 16 29 H 0.09 2.06 8.01 -2.39 -0.02 2.04 16 30 H 0.07 1.82 7.90 -2.39 -0.02 1.80 16 31 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.13 1.88 8.14 -2.38 -0.02 1.86 16 33 H 0.14 2.68 8.06 -2.91 -0.02 2.66 16 34 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16 35 H 0.14 2.75 8.06 -2.91 -0.02 2.73 16 36 H 0.12 3.84 7.69 -2.91 -0.02 3.82 16 Total: -1.00 -65.92 300.00 2.02 -63.90 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: 0.31 Total: 18.08 kcal Atomic # 6 Polarization: -38.06 SS G_CDS: 3.03 Total: -35.03 kcal Atomic # 7 Polarization: -81.55 SS G_CDS: -2.41 Total: -83.95 kcal Atomic # 8 Polarization: -8.24 SS G_CDS: -0.94 Total: -9.18 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal Total: -65.92 2.02 -63.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049855904.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.518 kcal (2) G-P(sol) polarization free energy of solvation -65.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds