Wall clock time and date at job start Mon Mar 30 2020 06:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30905 * 1 3 3 Si 1.86798 * 119.99659 * 2 1 4 4 H 1.48494 * 109.47252 * 239.99739 * 3 2 1 5 5 H 1.48498 * 109.47147 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47211 * 119.99821 * 3 2 1 7 7 C 1.39859 * 120.00228 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99972 * 197.96399 * 7 2 1 9 9 C 1.41133 * 120.00049 * 17.96590 * 7 2 1 10 10 C 1.40884 * 120.15811 * 24.60999 * 9 7 2 11 11 C 1.36336 * 119.83982 * 179.97438 * 10 9 7 12 12 C 1.39565 * 120.15993 * 359.97438 * 11 10 9 13 13 N 1.38861 * 119.84068 * 179.97438 * 12 11 10 14 14 C 1.46505 * 119.99956 * 179.97438 * 13 12 11 15 15 H 1.08998 * 110.05232 * 33.59159 * 14 13 12 16 16 C 1.54262 * 110.03249 * 272.17133 * 14 13 12 17 17 C 1.54890 * 104.19590 * 217.10473 * 16 14 13 18 18 C 1.54886 * 102.74820 * 37.94035 * 17 16 14 19 19 C 1.53871 * 110.03013 * 155.00459 * 14 13 12 20 20 H 1.09005 * 110.07035 * 238.59351 * 19 14 13 21 21 O 1.42898 * 110.03697 * 359.97438 * 19 14 13 22 22 C 1.39565 * 120.31803 * 0.28074 * 12 11 10 23 23 C 1.36340 * 120.15760 * 359.47567 * 22 12 11 24 24 H 0.96996 * 120.00360 * 359.97438 * 1 2 3 25 25 H 1.08005 * 120.07942 * 0.02562 * 10 9 7 26 26 H 1.08007 * 119.91945 * 180.02562 * 11 10 9 27 27 H 0.97005 * 120.00148 * 0.02562 * 13 12 11 28 28 H 1.08997 * 110.48767 * 98.42600 * 16 14 13 29 29 H 1.08999 * 110.48987 * 335.77897 * 16 14 13 30 30 H 1.09005 * 110.76031 * 279.62990 * 17 16 14 31 31 H 1.08996 * 110.91908 * 156.32783 * 17 16 14 32 32 H 1.09005 * 110.49082 * 203.37947 * 18 17 16 33 33 H 1.09003 * 110.59930 * 80.79317 * 18 17 16 34 34 H 0.96702 * 114.00612 * 178.62035 * 21 19 14 35 35 H 1.07999 * 119.91862 * 179.72520 * 22 12 11 36 36 H 1.07999 * 120.08286 * 180.27538 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 3.0967 1.6965 -1.2124 5 1 1.2779 2.7464 -0.0006 6 1 3.0967 1.6965 1.2126 7 6 2.0084 -1.2112 0.0005 8 1 3.0490 -1.2338 0.2890 9 6 1.3544 -2.4038 -0.3759 10 6 0.2262 -2.3568 -1.2184 11 6 -0.4003 -3.5130 -1.5784 12 6 0.0738 -4.7411 -1.1149 13 7 -0.5697 -5.9145 -1.4853 14 6 -0.0746 -7.2056 -1.0013 15 1 0.3381 -7.0955 0.0015 16 6 1.0041 -7.7509 -1.9598 17 6 0.7545 -9.2794 -1.9823 18 6 -0.7910 -9.3740 -1.9438 19 6 -1.2160 -8.2375 -0.9912 20 1 -1.3580 -8.6284 0.0164 21 8 -2.4252 -7.6346 -1.4563 22 6 1.1877 -4.7950 -0.2758 23 6 1.8271 -3.6472 0.0884 24 1 -0.4850 0.8400 0.0004 25 1 -0.1411 -1.4072 -1.5788 26 1 -1.2651 -3.4784 -2.2245 27 1 -1.3465 -5.8794 -2.0652 28 1 2.0008 -7.5328 -1.5763 29 1 0.8772 -7.3290 -2.9568 30 1 1.1926 -9.7554 -1.1050 31 1 1.1460 -9.7242 -2.8972 32 1 -1.1044 -10.3403 -1.5486 33 1 -1.2098 -9.2154 -2.9376 34 1 -3.1779 -8.2405 -1.4933 35 1 1.5465 -5.7485 0.0826 36 1 2.6917 -3.6907 0.7342 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051601553.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:35 Heat of formation + Delta-G solvation = -32.886863 kcal Electronic energy + Delta-G solvation = -17573.668599 eV Core-core repulsion = 14828.843987 eV Total energy + Delta-G solvation = -2744.824612 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.19090 -37.43628 -35.15035 -34.09922 -32.43120 -29.59000 -28.66804 -27.64959 -26.71019 -24.01839 -21.32590 -20.89377 -20.32790 -19.37592 -17.51318 -17.12735 -16.11010 -15.38065 -15.01448 -14.83949 -14.26273 -13.85432 -13.54570 -13.00028 -12.64304 -12.34613 -12.16557 -11.91113 -11.61582 -11.47166 -11.18539 -11.06331 -10.93884 -10.81907 -10.76255 -10.50022 -10.35272 -9.91839 -9.60212 -9.21491 -9.12941 -8.42393 -7.40480 -6.56541 -6.26918 -3.94987 2.99184 3.17328 3.18950 3.21730 3.43187 3.99444 4.10921 4.56466 4.59611 4.68977 4.85324 5.00282 5.27304 5.51731 5.57100 5.58524 5.76462 5.79120 5.90366 5.97133 6.14360 6.25969 6.34920 6.40351 6.47610 6.95831 7.15765 7.29231 7.38296 7.59388 7.72575 7.76338 7.91807 8.22691 8.43050 8.63113 8.82248 8.96959 9.13467 9.24848 10.44799 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.053102 B = 0.004639 C = 0.004398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.159951 B = 6033.980892 C = 6365.153810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.075 3.925 3 Si 0.902 3.098 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.469 4.469 8 H 0.071 0.929 9 C 0.072 3.928 10 C -0.121 4.121 11 C -0.165 4.165 12 C 0.099 3.901 13 N -0.741 5.741 14 C 0.167 3.833 15 H 0.078 0.922 16 C -0.140 4.140 17 C -0.123 4.123 18 C -0.157 4.157 19 C 0.093 3.907 20 H 0.059 0.941 21 O -0.556 6.556 22 C -0.166 4.166 23 C -0.187 4.187 24 H 0.276 0.724 25 H 0.118 0.882 26 H 0.086 0.914 27 H 0.395 0.605 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.373 0.627 35 H 0.086 0.914 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.318 -14.581 -3.093 15.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.500 4.500 8 H 0.089 0.911 9 C 0.069 3.931 10 C -0.141 4.141 11 C -0.187 4.187 12 C 0.001 3.999 13 N -0.377 5.377 14 C 0.059 3.941 15 H 0.096 0.904 16 C -0.180 4.180 17 C -0.161 4.161 18 C -0.195 4.195 19 C 0.033 3.967 20 H 0.077 0.923 21 O -0.360 6.360 22 C -0.188 4.188 23 C -0.208 4.208 24 H 0.087 0.913 25 H 0.136 0.864 26 H 0.104 0.896 27 H 0.230 0.770 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.220 0.780 35 H 0.105 0.895 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.033 -13.972 -3.006 14.436 hybrid contribution -0.279 0.217 -0.044 0.356 sum -2.312 -13.755 -3.050 14.278 Atomic orbital electron populations 1.69852 1.07331 1.28606 1.37908 1.25775 0.94630 1.00781 0.92801 0.86481 0.80127 0.80977 0.79672 1.19144 1.20632 1.19329 1.19316 0.97864 0.91419 1.41411 0.91084 1.17471 0.92524 0.91960 0.91128 1.20918 0.98084 0.96331 0.98770 1.20041 1.01570 0.91885 1.05178 1.17419 0.95709 0.85420 1.01316 1.43711 1.34847 1.01302 1.57798 1.21256 0.91253 0.83936 0.97686 0.90362 1.22984 0.99725 0.94123 1.01141 1.22374 0.94918 0.97061 1.01721 1.23112 0.97322 0.98367 1.00661 1.22780 0.85452 0.92664 0.95822 0.92319 1.86481 1.19722 1.40769 1.89054 1.19864 0.98408 0.96970 1.03542 1.20539 1.02600 0.92726 1.04911 0.91348 0.86407 0.89574 0.77038 0.91311 0.90912 0.91474 0.91546 0.91737 0.90662 0.78037 0.89549 0.89259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.08 10.96 55.54 0.61 -21.47 16 2 C 0.07 1.98 5.13 -17.34 -0.09 1.90 16 3 Si 0.90 19.68 29.60 -169.99 -5.03 14.65 16 4 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 5 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 6 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 7 C -0.47 -13.08 9.03 -37.88 -0.34 -13.42 16 8 H 0.07 1.91 7.91 -52.48 -0.41 1.49 16 9 C 0.07 2.01 5.57 -106.79 -0.60 1.41 16 10 C -0.12 -3.29 8.64 -39.27 -0.34 -3.63 16 11 C -0.16 -4.05 9.82 -39.77 -0.39 -4.44 16 12 C 0.10 2.26 6.67 -83.69 -0.56 1.70 16 13 N -0.74 -13.95 4.96 -50.95 -0.25 -14.21 16 14 C 0.17 2.56 2.93 -66.81 -0.20 2.36 16 15 H 0.08 1.27 6.39 -51.93 -0.33 0.94 16 16 C -0.14 -1.91 6.53 -25.07 -0.16 -2.07 16 17 C -0.12 -1.26 6.91 -24.74 -0.17 -1.43 16 18 C -0.16 -1.52 6.55 -25.08 -0.16 -1.68 16 19 C 0.09 1.12 4.26 -25.62 -0.11 1.01 16 20 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 21 O -0.56 -6.93 11.44 -35.23 -0.40 -7.33 16 22 C -0.17 -3.85 9.14 -39.77 -0.36 -4.21 16 23 C -0.19 -4.79 9.74 -39.26 -0.38 -5.18 16 24 H 0.28 6.91 8.30 -40.82 -0.34 6.57 16 25 H 0.12 3.30 6.16 -52.48 -0.32 2.98 16 26 H 0.09 1.95 8.06 -52.48 -0.42 1.52 16 27 H 0.39 7.29 7.21 -40.82 -0.29 7.00 16 28 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.07 1.09 8.05 -51.93 -0.42 0.67 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.75 8.08 -51.93 -0.42 0.33 16 34 H 0.37 2.86 9.10 45.56 0.41 3.27 16 35 H 0.09 1.78 6.18 -52.49 -0.32 1.46 16 36 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 LS Contribution 293.39 15.07 4.42 4.42 Total: -1.00 -30.00 293.39 -8.72 -38.72 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -4.21 Total: 12.90 kcal Atomic # 6 Polarization: -23.82 SS G_CDS: -3.86 Total: -27.69 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: 0.36 Total: -35.68 kcal Atomic # 8 Polarization: -6.93 SS G_CDS: -0.40 Total: -7.33 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.03 Total: 14.65 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.00 -8.72 -38.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051601553.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.834 kcal (2) G-P(sol) polarization free energy of solvation -29.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds