Wall clock time and date at job start Mon Mar 30 2020 06:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30905 * 1 3 3 Si 1.86798 * 119.99659 * 2 1 4 4 H 1.48494 * 109.47252 * 239.99739 * 3 2 1 5 5 H 1.48498 * 109.47147 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47211 * 119.99821 * 3 2 1 7 7 C 1.39859 * 120.00228 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99972 * 197.96399 * 7 2 1 9 9 C 1.41133 * 120.00049 * 17.96590 * 7 2 1 10 10 C 1.40884 * 120.15811 * 24.60999 * 9 7 2 11 11 C 1.36336 * 119.83982 * 179.97438 * 10 9 7 12 12 C 1.39565 * 120.15993 * 359.97438 * 11 10 9 13 13 N 1.38861 * 119.84068 * 179.97438 * 12 11 10 14 14 C 1.46505 * 119.99956 * 179.97438 * 13 12 11 15 15 H 1.08998 * 110.05232 * 33.59159 * 14 13 12 16 16 C 1.54262 * 110.03249 * 272.17133 * 14 13 12 17 17 C 1.54890 * 104.19590 * 217.10473 * 16 14 13 18 18 C 1.54886 * 102.74820 * 37.94035 * 17 16 14 19 19 C 1.53871 * 110.03013 * 155.00459 * 14 13 12 20 20 H 1.09005 * 110.07035 * 238.59351 * 19 14 13 21 21 O 1.42898 * 110.03697 * 359.97438 * 19 14 13 22 22 C 1.39565 * 120.31803 * 0.28074 * 12 11 10 23 23 C 1.36340 * 120.15760 * 359.47567 * 22 12 11 24 24 H 0.96996 * 120.00360 * 359.97438 * 1 2 3 25 25 H 1.08005 * 120.07942 * 0.02562 * 10 9 7 26 26 H 1.08007 * 119.91945 * 180.02562 * 11 10 9 27 27 H 0.97005 * 120.00148 * 0.02562 * 13 12 11 28 28 H 1.08997 * 110.48767 * 98.42600 * 16 14 13 29 29 H 1.08999 * 110.48987 * 335.77897 * 16 14 13 30 30 H 1.09005 * 110.76031 * 279.62990 * 17 16 14 31 31 H 1.08996 * 110.91908 * 156.32783 * 17 16 14 32 32 H 1.09005 * 110.49082 * 203.37947 * 18 17 16 33 33 H 1.09003 * 110.59930 * 80.79317 * 18 17 16 34 34 H 0.96702 * 114.00612 * 178.62035 * 21 19 14 35 35 H 1.07999 * 119.91862 * 179.72520 * 22 12 11 36 36 H 1.07999 * 120.08286 * 180.27538 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 3.0967 1.6965 -1.2124 5 1 1.2779 2.7464 -0.0006 6 1 3.0967 1.6965 1.2126 7 6 2.0084 -1.2112 0.0005 8 1 3.0490 -1.2338 0.2890 9 6 1.3544 -2.4038 -0.3759 10 6 0.2262 -2.3568 -1.2184 11 6 -0.4003 -3.5130 -1.5784 12 6 0.0738 -4.7411 -1.1149 13 7 -0.5697 -5.9145 -1.4853 14 6 -0.0746 -7.2056 -1.0013 15 1 0.3381 -7.0955 0.0015 16 6 1.0041 -7.7509 -1.9598 17 6 0.7545 -9.2794 -1.9823 18 6 -0.7910 -9.3740 -1.9438 19 6 -1.2160 -8.2375 -0.9912 20 1 -1.3580 -8.6284 0.0164 21 8 -2.4252 -7.6346 -1.4563 22 6 1.1877 -4.7950 -0.2758 23 6 1.8271 -3.6472 0.0884 24 1 -0.4850 0.8400 0.0004 25 1 -0.1411 -1.4072 -1.5788 26 1 -1.2651 -3.4784 -2.2245 27 1 -1.3465 -5.8794 -2.0652 28 1 2.0008 -7.5328 -1.5763 29 1 0.8772 -7.3290 -2.9568 30 1 1.1926 -9.7554 -1.1050 31 1 1.1460 -9.7242 -2.8972 32 1 -1.1044 -10.3403 -1.5486 33 1 -1.2098 -9.2154 -2.9376 34 1 -3.1779 -8.2405 -1.4933 35 1 1.5465 -5.7485 0.0826 36 1 2.6917 -3.6907 0.7342 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051601553.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:35 Heat of formation + Delta-G solvation = -52.356735 kcal Electronic energy + Delta-G solvation = -17574.512876 eV Core-core repulsion = 14828.843987 eV Total energy + Delta-G solvation = -2745.668889 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.42716 -39.12691 -36.39268 -35.62130 -34.15989 -31.48513 -30.48916 -28.63517 -28.08703 -25.85555 -23.08607 -22.23989 -21.71765 -20.70947 -19.10647 -18.64933 -17.46873 -17.11764 -16.42892 -16.14946 -15.57275 -15.24780 -14.79548 -14.66234 -14.33574 -13.92134 -13.72938 -13.53431 -13.17737 -12.94635 -12.73966 -12.67219 -12.34062 -12.13875 -11.94123 -11.83418 -11.53976 -11.47440 -11.17970 -11.02928 -10.77975 -10.23135 -9.39673 -8.53210 -8.11045 -5.98329 1.11865 1.20061 1.40320 1.51671 1.61198 2.28346 2.78737 2.86253 3.50726 3.68516 3.70854 3.88060 4.11683 4.38327 4.40282 4.45944 4.55907 4.59294 4.74763 4.78859 4.99530 5.02170 5.13796 5.15740 5.19781 5.29918 5.33605 5.41701 5.45911 5.75488 5.81251 5.94438 6.19573 6.42436 6.70269 6.84631 6.99673 7.09664 7.22867 7.40169 8.50099 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.053102 B = 0.004639 C = 0.004398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.159951 B = 6033.980892 C = 6365.153810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.031 3.969 3 Si 0.978 3.022 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.261 1.261 7 C -0.508 4.508 8 H 0.068 0.932 9 C 0.033 3.967 10 C -0.140 4.140 11 C -0.180 4.180 12 C 0.117 3.883 13 N -0.735 5.735 14 C 0.151 3.849 15 H 0.069 0.931 16 C -0.140 4.140 17 C -0.115 4.115 18 C -0.145 4.145 19 C 0.096 3.904 20 H 0.073 0.927 21 O -0.578 6.578 22 C -0.170 4.170 23 C -0.195 4.195 24 H 0.282 0.718 25 H 0.099 0.901 26 H 0.101 0.899 27 H 0.397 0.603 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.073 0.927 34 H 0.394 0.606 35 H 0.115 0.885 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.453 -16.602 -3.208 17.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.180 4.180 3 Si 0.799 3.201 4 H -0.188 1.188 5 H -0.195 1.195 6 H -0.186 1.186 7 C -0.539 4.539 8 H 0.086 0.914 9 C 0.030 3.970 10 C -0.160 4.160 11 C -0.202 4.202 12 C 0.017 3.983 13 N -0.369 5.369 14 C 0.044 3.956 15 H 0.087 0.913 16 C -0.179 4.179 17 C -0.153 4.153 18 C -0.183 4.183 19 C 0.036 3.964 20 H 0.091 0.909 21 O -0.386 6.386 22 C -0.192 4.192 23 C -0.215 4.215 24 H 0.092 0.908 25 H 0.117 0.883 26 H 0.119 0.881 27 H 0.233 0.767 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.111 0.889 33 H 0.092 0.908 34 H 0.245 0.755 35 H 0.133 0.867 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.192 -16.063 -3.129 16.511 hybrid contribution -0.316 0.646 -0.030 0.720 sum -2.508 -15.417 -3.159 15.936 Atomic orbital electron populations 1.69923 1.08823 1.29827 1.38635 1.26625 0.95438 1.04134 0.91816 0.85331 0.78737 0.76212 0.79805 1.18774 1.19456 1.18559 1.19561 0.98038 0.92768 1.43527 0.91365 1.17801 0.93629 0.93079 0.92483 1.20846 0.98849 0.96523 0.99766 1.20213 1.02157 0.92012 1.05824 1.17537 0.94975 0.86361 0.99430 1.43811 1.34374 1.01474 1.57205 1.21615 0.93483 0.83100 0.97387 0.91321 1.22896 0.98627 0.96883 0.99497 1.22371 0.95629 0.94164 1.03148 1.23046 0.96552 0.98636 1.00079 1.22739 0.84285 0.91919 0.97427 0.90886 1.86408 1.20704 1.42354 1.89156 1.20106 0.98264 0.97471 1.03363 1.20758 1.02966 0.92901 1.04903 0.90786 0.88272 0.88101 0.76703 0.92064 0.92548 0.89983 0.90243 0.88903 0.90838 0.75524 0.86735 0.88549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -47.50 10.96 21.81 0.24 -47.26 16 2 C 0.03 1.71 5.13 85.22 0.44 2.14 16 3 Si 0.98 41.09 29.60 68.60 2.03 43.12 16 4 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 5 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 6 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 7 C -0.51 -29.38 9.03 23.37 0.21 -29.17 16 8 H 0.07 3.81 7.91 -2.91 -0.02 3.79 16 9 C 0.03 1.91 5.57 -21.27 -0.12 1.79 16 10 C -0.14 -7.89 8.64 22.47 0.19 -7.70 16 11 C -0.18 -8.99 9.82 22.15 0.22 -8.77 16 12 C 0.12 5.31 6.67 38.67 0.26 5.57 16 13 N -0.73 -26.76 4.96 -315.12 -1.56 -28.32 16 14 C 0.15 4.32 2.93 45.71 0.13 4.45 16 15 H 0.07 2.10 6.39 -2.39 -0.02 2.08 16 16 C -0.14 -3.53 6.53 31.67 0.21 -3.32 16 17 C -0.12 -1.95 6.91 31.88 0.22 -1.73 16 18 C -0.15 -2.23 6.55 31.67 0.21 -2.03 16 19 C 0.10 2.01 4.26 31.32 0.13 2.14 16 20 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 21 O -0.58 -12.87 11.44 -148.98 -1.70 -14.58 16 22 C -0.17 -7.84 9.14 22.15 0.20 -7.64 16 23 C -0.20 -10.17 9.74 22.48 0.22 -9.95 16 24 H 0.28 14.47 8.30 -92.71 -0.77 13.70 16 25 H 0.10 5.86 6.16 -2.91 -0.02 5.85 16 26 H 0.10 4.61 8.06 -2.91 -0.02 4.58 16 27 H 0.40 14.16 7.21 -92.70 -0.67 13.49 16 28 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.06 1.61 8.05 -2.39 -0.02 1.59 16 30 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 31 H 0.08 1.18 8.14 -2.39 -0.02 1.17 16 32 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 33 H 0.07 1.19 8.08 -2.39 -0.02 1.17 16 34 H 0.39 4.84 9.10 -74.06 -0.67 4.16 16 35 H 0.11 4.57 6.18 -2.91 -0.02 4.55 16 36 H 0.10 4.74 8.06 -2.91 -0.02 4.72 16 Total: -1.00 -66.65 293.39 1.28 -65.37 By element: Atomic # 1 Polarization: 36.13 SS G_CDS: -0.25 Total: 35.88 kcal Atomic # 6 Polarization: -56.74 SS G_CDS: 2.52 Total: -54.21 kcal Atomic # 7 Polarization: -74.26 SS G_CDS: -1.32 Total: -75.58 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: -1.70 Total: -14.58 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 2.03 Total: 43.12 kcal Total: -66.65 1.28 -65.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051601553.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.012 kcal (2) G-P(sol) polarization free energy of solvation -66.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds