Wall clock time and date at job start Mon Mar 30 2020 06:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30907 * 1 3 3 Si 1.86794 * 120.00432 * 2 1 4 4 H 1.48503 * 109.46957 * 275.42041 * 3 2 1 5 5 H 1.48498 * 109.47072 * 35.41424 * 3 2 1 6 6 H 1.48498 * 109.47398 * 155.42018 * 3 2 1 7 7 C 1.39863 * 119.99589 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99803 * 341.71496 * 7 2 1 9 9 C 1.41135 * 120.00321 * 161.71966 * 7 2 1 10 10 C 1.40887 * 120.15297 * 330.12594 * 9 7 2 11 11 C 1.36340 * 119.83725 * 179.97438 * 10 9 7 12 12 C 1.39568 * 120.15787 * 359.97438 * 11 10 9 13 13 N 1.38865 * 119.83900 * 180.02562 * 12 11 10 14 14 C 1.46499 * 119.99700 * 180.02562 * 13 12 11 15 15 H 1.08993 * 110.44193 * 34.29281 * 14 13 12 16 16 C 1.54270 * 110.48621 * 271.75100 * 14 13 12 17 17 C 1.53869 * 106.60413 * 217.58309 * 16 14 13 18 18 C 1.54268 * 106.59392 * 359.97438 * 17 16 14 19 19 C 1.54893 * 110.48661 * 156.83822 * 14 13 12 20 20 H 1.09002 * 110.75613 * 38.43549 * 19 14 13 21 21 O 1.42898 * 110.75607 * 275.06800 * 19 14 13 22 22 C 1.39560 * 120.32110 * 0.26966 * 12 11 10 23 23 C 1.36351 * 120.15793 * 359.48992 * 22 12 11 24 24 H 0.97003 * 119.99716 * 359.97438 * 1 2 3 25 25 H 1.07994 * 120.08100 * 0.02562 * 10 9 7 26 26 H 1.07990 * 119.92227 * 180.02562 * 11 10 9 27 27 H 0.97001 * 119.99988 * 359.97438 * 13 12 11 28 28 H 1.09009 * 110.03258 * 336.87088 * 16 14 13 29 29 H 1.09003 * 110.02892 * 98.29522 * 16 14 13 30 30 H 1.08998 * 110.03559 * 119.27975 * 17 16 14 31 31 H 1.08996 * 110.03245 * 240.66794 * 17 16 14 32 32 H 1.09010 * 110.48547 * 142.29170 * 18 17 16 33 33 H 1.09004 * 110.49004 * 264.79919 * 18 17 16 34 34 H 0.96696 * 113.99973 * 180.02562 * 21 19 14 35 35 H 1.07998 * 119.92634 * 179.72421 * 22 12 11 36 36 H 1.07994 * 120.08197 * 180.22942 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2432 1.6176 0.0000 4 1 2.3761 2.1124 -1.3939 5 1 1.5026 2.6168 0.8113 6 1 3.5933 1.4097 0.5824 7 6 2.0083 -1.2113 -0.0005 8 1 1.5091 -2.1231 0.2925 9 6 3.3662 -1.2421 -0.3839 10 6 3.8593 -0.3094 -1.3176 11 6 5.1724 -0.3447 -1.6830 12 6 6.0275 -1.3015 -1.1340 13 7 7.3638 -1.3311 -1.5105 14 6 8.2643 -2.3343 -0.9369 15 1 7.7312 -3.2687 -0.7621 16 6 8.8863 -1.8140 0.3755 17 6 10.3403 -2.3167 0.4025 18 6 10.5510 -3.1255 -0.8942 19 6 9.4786 -2.5691 -1.8694 20 1 9.8104 -1.6314 -2.3151 21 8 9.1627 -3.5282 -2.8805 22 6 5.5449 -2.2318 -0.2125 23 6 4.2352 -2.2052 0.1659 24 1 -0.4850 0.8401 0.0004 25 1 3.1991 0.4322 -1.7422 26 1 5.5519 0.3698 -2.3982 27 1 7.7008 -0.6881 -2.1538 28 1 8.8676 -0.7242 0.3912 29 1 8.3385 -2.2096 1.2308 30 1 11.0273 -1.4709 0.4312 31 1 10.4984 -2.9555 1.2713 32 1 11.5517 -2.9555 -1.2915 33 1 10.3895 -4.1879 -0.7117 34 1 9.8905 -3.7110 -3.4903 35 1 6.2112 -2.9722 0.2050 36 1 3.8639 -2.9234 0.8819 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051601557.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:41 Heat of formation + Delta-G solvation = -35.688305 kcal Electronic energy + Delta-G solvation = -17589.825539 eV Core-core repulsion = 14844.879447 eV Total energy + Delta-G solvation = -2744.946092 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.23238 -37.75138 -35.42599 -34.16393 -32.71065 -29.89979 -29.41326 -27.78180 -26.79544 -23.91358 -21.89852 -20.79752 -20.32733 -19.84880 -17.66157 -17.25725 -16.27998 -16.05125 -15.08467 -14.89217 -14.09594 -13.88551 -13.43324 -13.22450 -12.90768 -12.74763 -12.35344 -12.25582 -12.25289 -11.97282 -11.55713 -11.29894 -10.91515 -10.68039 -10.61725 -10.40742 -10.15546 -10.05074 -9.88553 -9.45790 -9.15919 -8.66357 -7.72769 -6.72991 -6.55906 -4.12730 2.74016 2.84866 3.22269 3.32290 3.44008 3.99833 4.10201 4.13800 4.48074 4.68397 4.76421 4.85701 5.16080 5.34367 5.46534 5.49419 5.55942 5.62410 5.73924 5.88752 6.01907 6.07082 6.10395 6.20708 6.30302 6.59095 6.72697 6.95251 7.17641 7.35951 7.43519 7.55952 7.65278 7.97977 8.10601 8.35781 8.52815 8.60749 8.88808 9.03006 10.31622 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.042785 B = 0.005077 C = 0.005040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.275341 B = 5513.287584 C = 5554.358179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.083 3.917 3 Si 0.908 3.092 4 H -0.274 1.274 5 H -0.294 1.294 6 H -0.246 1.246 7 C -0.455 4.455 8 H 0.086 0.914 9 C 0.059 3.941 10 C -0.196 4.196 11 C -0.143 4.143 12 C 0.095 3.905 13 N -0.750 5.750 14 C 0.168 3.832 15 H 0.087 0.913 16 C -0.141 4.141 17 C -0.120 4.120 18 C -0.154 4.154 19 C 0.089 3.911 20 H 0.064 0.936 21 O -0.555 6.555 22 C -0.147 4.147 23 C -0.169 4.169 24 H 0.280 0.720 25 H 0.100 0.900 26 H 0.091 0.909 27 H 0.385 0.615 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.373 0.627 35 H 0.094 0.906 36 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.117 -2.072 -1.826 19.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.133 4.133 3 Si 0.735 3.265 4 H -0.201 1.201 5 H -0.222 1.222 6 H -0.170 1.170 7 C -0.486 4.486 8 H 0.104 0.896 9 C 0.055 3.945 10 C -0.216 4.216 11 C -0.165 4.165 12 C -0.002 4.002 13 N -0.384 5.384 14 C 0.061 3.939 15 H 0.105 0.895 16 C -0.181 4.181 17 C -0.159 4.159 18 C -0.193 4.193 19 C 0.030 3.970 20 H 0.081 0.919 21 O -0.360 6.360 22 C -0.168 4.168 23 C -0.189 4.189 24 H 0.090 0.910 25 H 0.118 0.882 26 H 0.109 0.891 27 H 0.218 0.782 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.219 0.781 35 H 0.112 0.888 36 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 18.278 -2.124 -1.380 18.452 hybrid contribution 0.935 1.064 -0.525 1.511 sum 19.213 -1.060 -1.905 19.336 Atomic orbital electron populations 1.69749 1.07911 1.29586 1.37937 1.26041 0.94619 1.01286 0.91353 0.86379 0.81269 0.80376 0.78463 1.20059 1.22216 1.16975 1.19270 0.93323 0.95875 1.40094 0.89642 1.17641 0.93310 0.92158 0.91358 1.20612 0.94908 1.03662 1.02431 1.19890 0.94073 0.99719 1.02867 1.17289 0.83571 0.98788 1.00509 1.43845 1.06558 1.37062 1.50895 1.21358 0.89015 0.93029 0.90504 0.89523 1.22675 0.94903 1.01748 0.98746 1.22008 0.97082 0.99466 0.97301 1.23033 0.98777 1.00965 0.96491 1.23152 0.94979 0.90937 0.87981 0.91854 1.86616 1.42190 1.62781 1.44376 1.20048 0.96196 0.99515 1.01079 1.20642 0.92529 1.02955 1.02800 0.90982 0.88236 0.89051 0.78204 0.90981 0.91101 0.91850 0.91597 0.91581 0.90526 0.78078 0.88765 0.88226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.18 13.93 55.54 0.77 -22.40 16 2 C 0.08 2.28 5.40 -17.34 -0.09 2.19 16 3 Si 0.91 21.79 24.51 -169.99 -4.17 17.62 16 4 H -0.27 -6.39 6.70 56.52 0.38 -6.01 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.25 -6.04 6.87 56.52 0.39 -5.65 16 7 C -0.46 -12.90 9.55 -37.88 -0.36 -13.27 16 8 H 0.09 2.53 8.06 -52.48 -0.42 2.11 16 9 C 0.06 1.55 5.10 -106.79 -0.55 1.01 16 10 C -0.20 -4.91 7.11 -39.26 -0.28 -5.19 16 11 C -0.14 -3.20 9.82 -39.77 -0.39 -3.59 16 12 C 0.10 2.00 6.67 -83.69 -0.56 1.44 16 13 N -0.75 -12.57 5.25 -50.43 -0.26 -12.83 16 14 C 0.17 2.40 2.57 -66.27 -0.17 2.23 16 15 H 0.09 1.41 6.46 -51.93 -0.34 1.08 16 16 C -0.14 -1.76 6.54 -25.61 -0.17 -1.93 16 17 C -0.12 -1.15 6.80 -25.62 -0.17 -1.32 16 18 C -0.15 -1.40 6.57 -24.87 -0.16 -1.56 16 19 C 0.09 1.01 3.89 -24.54 -0.10 0.91 16 20 H 0.06 0.65 8.03 -51.93 -0.42 0.24 16 21 O -0.56 -6.69 13.46 -35.23 -0.47 -7.17 16 22 C -0.15 -3.18 9.14 -39.77 -0.36 -3.54 16 23 C -0.17 -4.07 9.74 -39.26 -0.38 -4.46 16 24 H 0.28 7.16 8.30 -40.82 -0.34 6.82 16 25 H 0.10 2.50 4.72 -52.49 -0.25 2.26 16 26 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 27 H 0.39 5.81 8.55 -40.82 -0.35 5.47 16 28 H 0.07 0.95 8.04 -51.92 -0.42 0.53 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.37 2.64 9.12 45.56 0.42 3.05 16 35 H 0.09 1.82 6.20 -52.49 -0.33 1.49 16 36 H 0.10 2.27 8.06 -52.49 -0.42 1.85 16 LS Contribution 291.02 15.07 4.39 4.39 Total: -1.00 -30.45 291.02 -7.72 -38.17 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -4.23 Total: 9.31 kcal Atomic # 6 Polarization: -23.33 SS G_CDS: -3.74 Total: -27.08 kcal Atomic # 7 Polarization: -35.75 SS G_CDS: 0.51 Total: -35.24 kcal Atomic # 8 Polarization: -6.69 SS G_CDS: -0.47 Total: -7.17 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.17 Total: 17.62 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -30.45 -7.72 -38.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051601557.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.484 kcal (2) G-P(sol) polarization free energy of solvation -30.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds