Wall clock time and date at job start Mon Mar 30 2020 06:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86799 * 119.99915 * 2 1 4 4 H 1.48494 * 109.47164 * 270.00123 * 3 2 1 5 5 H 1.48499 * 109.47014 * 30.00665 * 3 2 1 6 6 H 1.48506 * 109.46904 * 150.00091 * 3 2 1 7 7 C 1.38653 * 119.99726 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99765 * 179.97438 * 7 2 1 9 9 O 1.34831 * 120.00325 * 359.97438 * 7 2 1 10 10 C 1.35753 * 116.99766 * 185.05796 * 9 7 2 11 11 C 1.38880 * 120.06310 * 174.19245 * 10 9 7 12 12 C 1.38102 * 119.92774 * 179.76605 * 11 10 9 13 13 C 1.38304 * 120.06899 * 0.48540 * 12 11 10 14 14 C 1.50701 * 119.93110 * 179.74393 * 13 12 11 15 15 N 1.46896 * 109.47050 * 270.01948 * 14 13 12 16 16 C 1.46903 * 110.99987 * 179.97438 * 15 14 13 17 17 C 1.53782 * 113.61560 * 254.14060 * 16 15 14 18 18 C 1.53957 * 87.01892 * 220.04338 * 17 16 15 19 19 C 1.53780 * 87.11052 * 25.36525 * 18 17 16 20 20 C 1.38302 * 120.13789 * 359.76939 * 13 12 11 21 21 C 1.38105 * 120.06695 * 359.97438 * 20 13 12 22 22 H 0.97003 * 120.00171 * 359.97438 * 1 2 3 23 23 H 1.08001 * 120.03810 * 359.97438 * 11 10 9 24 24 H 1.07994 * 119.96815 * 180.22560 * 12 11 10 25 25 H 1.08992 * 109.47296 * 30.02375 * 14 13 12 26 26 H 1.09000 * 109.46833 * 150.02416 * 14 13 12 27 27 H 1.00895 * 111.00274 * 303.95717 * 15 14 13 28 28 H 1.09004 * 112.84760 * 25.33541 * 16 15 14 29 29 H 1.08993 * 113.61278 * 334.56541 * 17 16 15 30 30 H 1.09001 * 113.60961 * 105.46921 * 17 16 15 31 31 H 1.09001 * 113.53984 * 270.81226 * 18 17 16 32 32 H 1.09003 * 113.66313 * 139.93196 * 18 17 16 33 33 H 1.09006 * 113.61627 * 220.09126 * 19 18 17 34 34 H 1.08995 * 113.69824 * 89.19322 * 19 18 17 35 35 H 1.08001 * 119.96675 * 179.97438 * 20 13 12 36 36 H 1.07996 * 120.03107 * 179.97438 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4970 2.0464 -1.4000 5 1 1.4470 2.6526 0.7002 6 1 3.5471 1.4401 0.7001 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3346 -2.3685 -0.0005 10 6 2.0700 -3.5046 0.1056 11 6 1.4366 -4.7339 0.2335 12 6 2.1874 -5.8885 0.3364 13 6 3.5687 -5.8204 0.3222 14 6 4.3850 -7.0816 0.4405 15 7 4.6573 -7.3576 1.8573 16 6 5.4524 -8.5831 2.0117 17 6 4.6427 -9.7809 2.5356 18 6 5.8696 -10.1307 3.3973 19 6 6.2458 -8.6412 3.3277 20 6 4.2024 -4.5972 0.2002 21 6 3.4571 -3.4396 0.0917 22 1 -0.4850 0.8401 0.0004 23 1 0.3580 -4.7873 0.2491 24 1 1.6955 -6.8451 0.4322 25 1 3.8311 -7.9148 0.0080 26 1 5.3272 -6.9559 -0.0928 27 1 5.1133 -6.5725 2.2975 28 1 6.0512 -8.8129 1.1303 29 1 3.7672 -9.4947 3.1183 30 1 4.4188 -10.5246 1.7708 31 1 6.5822 -10.7849 2.8949 32 1 5.6164 -10.4706 4.4015 33 1 7.3142 -8.4661 3.2015 34 1 5.8101 -8.0416 4.1269 35 1 5.2812 -4.5472 0.1899 36 1 3.9526 -2.4846 -0.0031 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052208075.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:31 Heat of formation + Delta-G solvation = 12.607701 kcal Electronic energy + Delta-G solvation = -16902.002643 eV Core-core repulsion = 14159.150824 eV Total energy + Delta-G solvation = -2742.851820 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.23623 -38.76677 -36.73340 -33.91930 -32.22236 -30.14100 -29.30006 -25.84451 -25.63234 -24.66567 -22.98091 -21.91816 -20.42925 -19.47433 -17.95925 -16.99420 -16.14257 -15.61345 -14.99076 -14.60425 -14.47084 -14.01251 -13.69219 -13.58220 -13.28380 -12.67388 -12.50852 -12.42861 -12.00788 -11.91190 -11.56706 -11.40063 -11.15756 -10.75486 -10.74001 -10.61506 -10.44882 -10.42085 -10.22929 -9.31506 -8.82468 -8.32930 -8.13929 -7.15858 -6.43863 -4.02765 2.25242 2.31515 3.13035 3.14042 3.18889 3.97509 4.27774 4.48006 4.57638 4.68092 4.80552 4.90489 5.11784 5.30897 5.36004 5.39488 5.49478 5.55612 5.70958 5.71593 5.76971 5.85038 5.88945 5.94097 6.13328 6.23806 6.28012 6.45782 6.73848 6.93144 7.05993 7.19044 7.29955 7.38829 7.45774 7.53572 7.85898 8.01284 9.01809 9.72558 10.74284 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.046050 B = 0.003819 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.884805 B = 7329.723785 C = 7632.322348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.392 4.392 8 H 0.092 0.908 9 O -0.179 6.179 10 C 0.156 3.844 11 C -0.194 4.194 12 C -0.052 4.052 13 C -0.185 4.185 14 C 0.117 3.883 15 N -0.674 5.674 16 C 0.056 3.944 17 C -0.127 4.127 18 C -0.143 4.143 19 C -0.144 4.144 20 C -0.066 4.066 21 C -0.235 4.235 22 H 0.270 0.730 23 H 0.116 0.884 24 H 0.111 0.889 25 H 0.069 0.931 26 H 0.026 0.974 27 H 0.342 0.658 28 H 0.067 0.933 29 H 0.089 0.911 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.102 0.898 36 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.802 -14.203 3.537 18.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.199 1.199 5 H -0.202 1.202 6 H -0.192 1.192 7 C -0.468 4.468 8 H 0.109 0.891 9 O -0.082 6.082 10 C 0.102 3.898 11 C -0.214 4.214 12 C -0.071 4.071 13 C -0.186 4.186 14 C -0.011 4.011 15 N -0.305 5.305 16 C -0.054 4.054 17 C -0.166 4.166 18 C -0.181 4.181 19 C -0.182 4.182 20 C -0.085 4.085 21 C -0.254 4.254 22 H 0.080 0.920 23 H 0.134 0.866 24 H 0.129 0.871 25 H 0.088 0.912 26 H 0.044 0.956 27 H 0.161 0.839 28 H 0.085 0.915 29 H 0.107 0.893 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.106 0.894 35 H 0.120 0.880 36 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 9.767 -14.289 3.611 17.681 hybrid contribution 1.390 1.198 -0.334 1.865 sum 11.157 -13.091 3.277 17.510 Atomic orbital electron populations 1.70039 1.05957 1.27643 1.46172 1.25286 0.95837 0.98818 0.96587 0.85716 0.78921 0.80125 0.78687 1.19902 1.20246 1.19214 1.21323 0.91780 0.80868 1.52855 0.89112 1.83981 1.34343 1.11457 1.78412 1.19398 0.90276 0.88055 0.92081 1.20233 0.99586 0.90376 1.11177 1.20468 0.92855 0.96664 0.97108 1.19143 0.93734 0.93480 1.12231 1.20666 0.96873 0.95544 0.87994 1.60723 1.49369 1.05352 1.15085 1.23055 0.94049 0.91926 0.96350 1.23056 0.97533 0.96881 0.99086 1.22743 0.98629 0.96218 1.00528 1.23167 0.99611 0.97244 0.98186 1.20589 0.97995 0.91966 0.97979 1.21114 0.93834 0.98778 1.11667 0.92032 0.86564 0.87067 0.91238 0.95572 0.83889 0.91512 0.89278 0.92103 0.90548 0.91366 0.91878 0.89383 0.87972 0.85665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.51 13.67 55.48 0.76 -24.75 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 20.62 29.55 -169.99 -5.02 15.60 16 4 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 5 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 6 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 7 C -0.39 -11.06 9.49 30.89 0.29 -10.76 16 8 H 0.09 2.37 5.20 -52.48 -0.27 2.09 16 9 O -0.18 -5.16 9.76 0.04 0.00 -5.16 16 10 C 0.16 3.82 6.65 -39.11 -0.26 3.56 16 11 C -0.19 -4.20 9.99 -39.39 -0.39 -4.59 16 12 C -0.05 -0.96 9.69 -39.61 -0.38 -1.34 16 13 C -0.18 -3.19 5.40 -104.57 -0.56 -3.75 16 14 C 0.12 1.63 5.66 -4.98 -0.03 1.60 16 15 N -0.67 -8.69 6.54 -107.13 -0.70 -9.39 16 16 C 0.06 0.60 4.12 -66.90 -0.28 0.32 16 17 C -0.13 -1.26 7.89 -25.83 -0.20 -1.46 16 18 C -0.14 -1.19 8.09 -25.83 -0.21 -1.40 16 19 C -0.14 -1.32 7.67 -25.92 -0.20 -1.51 16 20 C -0.07 -1.22 9.69 -39.61 -0.38 -1.61 16 21 C -0.23 -5.15 9.17 -39.40 -0.36 -5.51 16 22 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 23 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 24 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 25 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 26 H 0.03 0.34 8.07 -51.93 -0.42 -0.08 16 27 H 0.34 4.41 8.56 -39.29 -0.34 4.08 16 28 H 0.07 0.69 7.88 -51.93 -0.41 0.28 16 29 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 36 H 0.13 2.75 5.64 -52.49 -0.30 2.45 16 LS Contribution 304.61 15.07 4.59 4.59 Total: -1.00 -29.96 304.61 -8.53 -38.50 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -5.09 Total: 6.11 kcal Atomic # 6 Polarization: -22.42 SS G_CDS: -3.07 Total: -25.49 kcal Atomic # 7 Polarization: -34.20 SS G_CDS: 0.06 Total: -34.14 kcal Atomic # 8 Polarization: -5.16 SS G_CDS: 0.00 Total: -5.16 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.96 -8.53 -38.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052208075.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.105 kcal (2) G-P(sol) polarization free energy of solvation -29.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds