Wall clock time and date at job start Mon Mar 30 2020 06:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86799 * 119.99915 * 2 1 4 4 H 1.48494 * 109.47164 * 270.00123 * 3 2 1 5 5 H 1.48499 * 109.47014 * 30.00665 * 3 2 1 6 6 H 1.48506 * 109.46904 * 150.00091 * 3 2 1 7 7 C 1.38653 * 119.99726 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99765 * 179.97438 * 7 2 1 9 9 O 1.34831 * 120.00325 * 359.97438 * 7 2 1 10 10 C 1.35753 * 116.99766 * 185.05796 * 9 7 2 11 11 C 1.38880 * 120.06310 * 174.19245 * 10 9 7 12 12 C 1.38102 * 119.92774 * 179.76605 * 11 10 9 13 13 C 1.38304 * 120.06899 * 0.48540 * 12 11 10 14 14 C 1.50701 * 119.93110 * 179.74393 * 13 12 11 15 15 N 1.46896 * 109.47050 * 270.01948 * 14 13 12 16 16 C 1.46903 * 110.99987 * 179.97438 * 15 14 13 17 17 C 1.53782 * 113.61560 * 254.14060 * 16 15 14 18 18 C 1.53957 * 87.01892 * 220.04338 * 17 16 15 19 19 C 1.53780 * 87.11052 * 25.36525 * 18 17 16 20 20 C 1.38302 * 120.13789 * 359.76939 * 13 12 11 21 21 C 1.38105 * 120.06695 * 359.97438 * 20 13 12 22 22 H 0.97003 * 120.00171 * 359.97438 * 1 2 3 23 23 H 1.08001 * 120.03810 * 359.97438 * 11 10 9 24 24 H 1.07994 * 119.96815 * 180.22560 * 12 11 10 25 25 H 1.08992 * 109.47296 * 30.02375 * 14 13 12 26 26 H 1.09000 * 109.46833 * 150.02416 * 14 13 12 27 27 H 1.00895 * 111.00274 * 303.95717 * 15 14 13 28 28 H 1.09004 * 112.84760 * 25.33541 * 16 15 14 29 29 H 1.08993 * 113.61278 * 334.56541 * 17 16 15 30 30 H 1.09001 * 113.60961 * 105.46921 * 17 16 15 31 31 H 1.09001 * 113.53984 * 270.81226 * 18 17 16 32 32 H 1.09003 * 113.66313 * 139.93196 * 18 17 16 33 33 H 1.09006 * 113.61627 * 220.09126 * 19 18 17 34 34 H 1.08995 * 113.69824 * 89.19322 * 19 18 17 35 35 H 1.08001 * 119.96675 * 179.97438 * 20 13 12 36 36 H 1.07996 * 120.03107 * 179.97438 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4970 2.0464 -1.4000 5 1 1.4470 2.6526 0.7002 6 1 3.5471 1.4401 0.7001 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3346 -2.3685 -0.0005 10 6 2.0700 -3.5046 0.1056 11 6 1.4366 -4.7339 0.2335 12 6 2.1874 -5.8885 0.3364 13 6 3.5687 -5.8204 0.3222 14 6 4.3850 -7.0816 0.4405 15 7 4.6573 -7.3576 1.8573 16 6 5.4524 -8.5831 2.0117 17 6 4.6427 -9.7809 2.5356 18 6 5.8696 -10.1307 3.3973 19 6 6.2458 -8.6412 3.3277 20 6 4.2024 -4.5972 0.2002 21 6 3.4571 -3.4396 0.0917 22 1 -0.4850 0.8401 0.0004 23 1 0.3580 -4.7873 0.2491 24 1 1.6955 -6.8451 0.4322 25 1 3.8311 -7.9148 0.0080 26 1 5.3272 -6.9559 -0.0928 27 1 5.1133 -6.5725 2.2975 28 1 6.0512 -8.8129 1.1303 29 1 3.7672 -9.4947 3.1183 30 1 4.4188 -10.5246 1.7708 31 1 6.5822 -10.7849 2.8949 32 1 5.6164 -10.4706 4.4015 33 1 7.3142 -8.4661 3.2015 34 1 5.8101 -8.0416 4.1269 35 1 5.2812 -4.5472 0.1899 36 1 3.9526 -2.4846 -0.0031 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052208075.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:30 Heat of formation + Delta-G solvation = -6.155660 kcal Electronic energy + Delta-G solvation = -16902.816284 eV Core-core repulsion = 14159.150824 eV Total energy + Delta-G solvation = -2743.665460 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.80836 -39.77667 -38.39394 -35.14525 -34.17430 -31.78264 -30.76887 -27.57060 -26.51907 -25.95548 -23.98106 -23.59038 -21.96316 -20.27844 -19.83088 -18.84563 -17.07436 -16.66989 -16.45315 -16.25698 -15.71304 -15.55514 -15.43069 -15.13281 -14.37096 -14.32711 -13.99610 -13.60606 -13.25153 -13.01438 -12.99436 -12.69110 -12.54366 -12.30141 -12.23044 -12.11967 -11.62935 -11.27092 -11.16673 -11.10747 -10.78691 -9.77383 -9.31182 -8.89495 -8.47047 -6.15453 0.60888 0.68364 1.34907 1.44372 1.52738 2.17955 2.79476 3.11977 3.52998 3.53163 3.72355 3.87219 4.02661 4.05085 4.11356 4.16164 4.25653 4.47444 4.62311 4.64474 4.79351 4.81242 4.89877 4.98413 5.08365 5.10064 5.15378 5.15874 5.31322 5.39444 5.51886 5.59098 5.71738 5.82471 6.03123 6.19857 6.29541 6.50741 6.97592 7.78950 8.76417 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.046050 B = 0.003819 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.884805 B = 7329.723785 C = 7632.322348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.024 4.024 3 Si 1.020 2.980 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.253 1.253 7 C -0.414 4.414 8 H 0.102 0.898 9 O -0.234 6.234 10 C 0.114 3.886 11 C -0.207 4.207 12 C -0.048 4.048 13 C -0.158 4.158 14 C 0.122 3.878 15 N -0.684 5.684 16 C 0.053 3.947 17 C -0.131 4.131 18 C -0.135 4.135 19 C -0.142 4.142 20 C -0.062 4.062 21 C -0.243 4.243 22 H 0.273 0.727 23 H 0.111 0.889 24 H 0.142 0.858 25 H 0.080 0.920 26 H 0.044 0.956 27 H 0.342 0.658 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.139 0.861 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.743 -16.112 3.833 21.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.221 4.221 3 Si 0.839 3.161 4 H -0.188 1.188 5 H -0.196 1.196 6 H -0.176 1.176 7 C -0.491 4.491 8 H 0.119 0.881 9 O -0.141 6.141 10 C 0.063 3.937 11 C -0.226 4.226 12 C -0.067 4.067 13 C -0.159 4.159 14 C -0.006 4.006 15 N -0.316 5.316 16 C -0.057 4.057 17 C -0.169 4.169 18 C -0.173 4.173 19 C -0.180 4.180 20 C -0.081 4.081 21 C -0.262 4.262 22 H 0.082 0.918 23 H 0.129 0.871 24 H 0.160 0.840 25 H 0.099 0.901 26 H 0.062 0.938 27 H 0.161 0.839 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.108 0.892 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.156 0.844 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 12.744 -16.264 3.912 21.029 hybrid contribution 0.590 1.413 -0.392 1.580 sum 13.333 -14.851 3.520 20.267 Atomic orbital electron populations 1.70189 1.08072 1.28807 1.48953 1.26611 0.96859 1.02784 0.95855 0.84576 0.77802 0.74484 0.79273 1.18753 1.19586 1.17614 1.21833 0.92529 0.81469 1.53221 0.88095 1.83944 1.35997 1.12619 1.81492 1.19935 0.91676 0.87893 0.94155 1.20472 0.99911 0.90708 1.11514 1.20837 0.93531 0.96637 0.95688 1.19654 0.93650 0.94801 1.07825 1.20651 0.97147 0.93668 0.89147 1.60679 1.50543 1.06241 1.14120 1.23174 0.94287 0.90826 0.97366 1.23053 0.97606 0.96871 0.99420 1.22735 0.97940 0.95943 1.00689 1.23144 1.00011 0.97699 0.97103 1.20950 0.99676 0.90973 0.96495 1.21230 0.93025 1.00029 1.11915 0.91834 0.87085 0.84022 0.90144 0.93765 0.83928 0.90584 0.90701 0.91543 0.89182 0.90888 0.90803 0.90119 0.84372 0.86373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.35 13.67 21.61 0.30 -57.05 16 2 C -0.02 -1.37 5.49 84.83 0.47 -0.90 16 3 Si 1.02 43.20 29.55 68.60 2.03 45.22 16 4 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 5 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 6 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16 7 C -0.41 -24.50 9.49 67.92 0.64 -23.85 16 8 H 0.10 5.46 5.20 -2.91 -0.02 5.45 16 9 O -0.23 -14.37 9.76 -22.78 -0.22 -14.59 16 10 C 0.11 5.79 6.65 22.58 0.15 5.94 16 11 C -0.21 -9.10 9.99 22.39 0.22 -8.87 16 12 C -0.05 -1.69 9.69 22.25 0.22 -1.48 16 13 C -0.16 -4.98 5.40 -19.83 -0.11 -5.08 16 14 C 0.12 2.86 5.66 85.56 0.48 3.35 16 15 N -0.68 -15.22 6.54 -492.86 -3.22 -18.44 16 16 C 0.05 0.93 4.12 45.44 0.19 1.12 16 17 C -0.13 -2.21 7.89 31.18 0.25 -1.96 16 18 C -0.14 -1.82 8.09 31.18 0.25 -1.57 16 19 C -0.14 -2.14 7.67 31.12 0.24 -1.90 16 20 C -0.06 -2.14 9.69 22.25 0.22 -1.93 16 21 C -0.24 -10.69 9.17 22.39 0.21 -10.48 16 22 H 0.27 15.50 8.31 -92.71 -0.77 14.72 16 23 H 0.11 4.86 8.06 -2.91 -0.02 4.84 16 24 H 0.14 4.09 8.06 -2.91 -0.02 4.06 16 25 H 0.08 1.78 8.08 -2.39 -0.02 1.76 16 26 H 0.04 0.92 8.07 -2.39 -0.02 0.91 16 27 H 0.34 7.66 8.56 -89.70 -0.77 6.90 16 28 H 0.08 1.24 7.88 -2.39 -0.02 1.22 16 29 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 34 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.14 3.77 8.06 -2.91 -0.02 3.74 16 36 H 0.12 5.28 5.64 -2.91 -0.02 5.26 16 Total: -1.00 -68.97 304.61 2.61 -66.37 By element: Atomic # 1 Polarization: 25.81 SS G_CDS: 0.31 Total: 26.11 kcal Atomic # 6 Polarization: -51.04 SS G_CDS: 3.42 Total: -47.62 kcal Atomic # 7 Polarization: -72.56 SS G_CDS: -2.93 Total: -75.49 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: -0.22 Total: -14.59 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.22 kcal Total: -68.97 2.61 -66.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052208075.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.213 kcal (2) G-P(sol) polarization free energy of solvation -68.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds