Wall clock time and date at job start Mon Mar 30 2020 06:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86802 * 119.99765 * 2 1 4 4 H 1.48501 * 109.47301 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47247 * 300.00019 * 3 2 1 6 6 H 1.48505 * 109.47133 * 59.99637 * 3 2 1 7 7 C 1.38647 * 120.00167 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99878 * 180.02562 * 7 2 1 9 9 O 1.34831 * 120.00172 * 359.97438 * 7 2 1 10 10 C 1.35755 * 116.99881 * 185.06785 * 9 7 2 11 11 C 1.38900 * 120.07018 * 354.39990 * 10 9 7 12 12 C 1.38078 * 119.92665 * 180.28185 * 11 10 9 13 13 C 1.38318 * 120.07197 * 359.72012 * 12 11 10 14 14 C 1.38287 * 120.13786 * 0.02562 * 13 12 11 15 15 C 1.38117 * 120.06986 * 0.02562 * 14 13 12 16 16 C 1.50696 * 120.03584 * 179.97438 * 15 14 13 17 17 N 1.46898 * 109.47062 * 259.99870 * 16 15 14 18 18 C 1.46899 * 110.99954 * 180.02562 * 17 16 15 19 19 C 1.53785 * 113.61304 * 105.86061 * 18 17 16 20 20 C 1.54057 * 86.98176 * 140.01972 * 19 18 17 21 21 C 1.53782 * 113.61218 * 203.46817 * 18 17 16 22 22 H 0.97001 * 120.00192 * 0.02562 * 1 2 3 23 23 H 1.07996 * 120.03743 * 359.97438 * 11 10 9 24 24 H 1.07998 * 119.96561 * 179.74578 * 12 11 10 25 25 H 1.08003 * 119.93535 * 180.02562 * 13 12 11 26 26 H 1.08002 * 119.96565 * 180.02562 * 14 13 12 27 27 H 1.08998 * 109.46930 * 139.99826 * 16 15 14 28 28 H 1.08996 * 109.47221 * 19.99860 * 16 15 14 29 29 H 1.00903 * 110.99602 * 303.95054 * 17 16 15 30 30 H 1.09002 * 112.85352 * 334.66708 * 18 17 16 31 31 H 1.08997 * 113.61454 * 254.61178 * 19 18 17 32 32 H 1.08995 * 113.61335 * 25.52000 * 19 18 17 33 33 H 1.09003 * 113.61877 * 220.01719 * 20 19 18 34 34 H 1.08999 * 113.61272 * 89.11564 * 20 19 18 35 35 H 1.08993 * 113.62019 * 334.48312 * 21 18 17 36 36 H 1.09001 * 113.61304 * 105.30575 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.7096 1.3465 0.0006 5 1 1.8908 2.3965 -1.2125 6 1 1.8907 2.3965 1.2125 7 6 2.0089 -1.2007 -0.0005 8 1 3.0889 -1.2006 -0.0001 9 8 1.3348 -2.3684 -0.0005 10 6 2.0702 -3.5045 0.1058 11 6 3.4576 -3.4395 0.0912 12 6 4.2026 -4.5974 0.1936 13 6 3.5689 -5.8207 0.3166 14 6 2.1878 -5.8883 0.3367 15 6 1.4369 -4.7337 0.2335 16 6 -0.0681 -4.8083 0.2550 17 7 -0.5822 -4.7231 -1.1184 18 6 -2.0494 -4.7921 -1.1365 19 6 -2.7262 -3.4406 -1.4200 20 6 -3.7277 -4.2179 -2.2952 21 6 -2.6268 -5.2761 -2.4771 22 1 -0.4850 0.8400 -0.0004 23 1 3.9530 -2.4847 -0.0052 24 1 5.2814 -4.5480 0.1782 25 1 4.1539 -6.7251 0.3970 26 1 1.6959 -6.8449 0.4332 27 1 -0.4644 -3.9808 0.8434 28 1 -0.3787 -5.7529 0.7013 29 1 -0.2542 -3.8857 -1.5760 30 1 -2.4595 -5.3126 -0.2711 31 1 -3.1767 -2.9844 -0.5385 32 1 -2.1001 -2.7483 -1.9829 33 1 -3.9940 -3.7018 -3.2176 34 1 -4.5965 -4.5816 -1.7465 35 1 -1.9737 -5.0848 -3.3285 36 1 -2.9959 -6.3014 -2.4488 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052208077.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:34 Heat of formation + Delta-G solvation = 12.224540 kcal Electronic energy + Delta-G solvation = -17794.994630 eV Core-core repulsion = 15052.126195 eV Total energy + Delta-G solvation = -2742.868435 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.23937 -38.41451 -36.37106 -33.86741 -32.26371 -30.08041 -28.80097 -25.47042 -25.22411 -24.97237 -22.71499 -21.56803 -20.44873 -19.19151 -17.93352 -16.79340 -15.53345 -15.43112 -14.71848 -14.65030 -14.24326 -13.94318 -13.56740 -13.36688 -12.95114 -12.51604 -12.41439 -12.05329 -11.74664 -11.68056 -11.39238 -11.32284 -10.93383 -10.75462 -10.62028 -10.46994 -10.39882 -10.11922 -9.94030 -9.29763 -8.85345 -8.09272 -7.71107 -7.18359 -6.46555 -4.04852 2.18573 2.41439 3.10833 3.12926 3.17685 3.95379 4.50842 4.87062 4.99207 5.05873 5.11954 5.21280 5.28352 5.41902 5.64062 5.65694 5.83883 5.89778 5.96602 6.03888 6.13707 6.16998 6.17692 6.33760 6.38636 6.46534 6.55104 6.70642 6.74608 6.94313 7.12508 7.29356 7.40091 7.44308 7.67509 7.86826 7.95917 8.05117 9.00247 9.69174 10.71048 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.014021 B = 0.009062 C = 0.005711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.455005 B = 3089.139476 C = 4901.494379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.041 3.959 3 Si 0.938 3.062 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.391 4.391 8 H 0.091 0.909 9 O -0.177 6.177 10 C 0.157 3.843 11 C -0.234 4.234 12 C -0.076 4.076 13 C -0.214 4.214 14 C -0.061 4.061 15 C -0.157 4.157 16 C 0.118 3.882 17 N -0.674 5.674 18 C 0.068 3.932 19 C -0.163 4.163 20 C -0.144 4.144 21 C -0.128 4.128 22 H 0.268 0.732 23 H 0.126 0.874 24 H 0.105 0.895 25 H 0.105 0.895 26 H 0.111 0.889 27 H 0.041 0.959 28 H 0.063 0.937 29 H 0.353 0.647 30 H 0.088 0.912 31 H 0.063 0.937 32 H 0.087 0.913 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.630 -7.132 -1.466 7.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.163 4.163 3 Si 0.763 3.237 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.467 4.467 8 H 0.108 0.892 9 O -0.080 6.080 10 C 0.103 3.897 11 C -0.254 4.254 12 C -0.094 4.094 13 C -0.233 4.233 14 C -0.080 4.080 15 C -0.159 4.159 16 C -0.010 4.010 17 N -0.305 5.305 18 C -0.043 4.043 19 C -0.202 4.202 20 C -0.182 4.182 21 C -0.166 4.166 22 H 0.078 0.922 23 H 0.143 0.857 24 H 0.123 0.877 25 H 0.123 0.877 26 H 0.129 0.871 27 H 0.060 0.940 28 H 0.081 0.919 29 H 0.173 0.827 30 H 0.106 0.894 31 H 0.082 0.918 32 H 0.105 0.895 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.100 0.900 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.969 -7.579 -1.601 7.993 hybrid contribution 0.410 1.785 0.358 1.866 sum -1.559 -5.795 -1.243 6.128 Atomic orbital electron populations 1.70031 1.05787 1.27383 1.46471 1.25219 0.95823 0.98625 0.96648 0.85695 0.79208 0.80631 0.78194 1.19175 1.20219 1.20243 1.21344 0.91808 0.80853 1.52725 0.89191 1.83944 1.34123 1.11254 1.78691 1.19220 0.90188 0.87698 0.92544 1.21153 0.93786 0.98961 1.11461 1.20749 0.98388 0.92504 0.97784 1.20591 0.94357 0.96889 1.11468 1.20540 0.93419 0.96224 0.97768 1.18881 0.94738 0.90924 1.11328 1.20510 0.90871 0.99851 0.89762 1.60639 1.06929 1.45703 1.17185 1.22975 0.88059 0.95929 0.97374 1.23646 0.98823 0.97610 1.00142 1.22785 0.96889 0.98472 1.00097 1.23014 0.97087 0.97990 0.98529 0.92227 0.85659 0.87659 0.87735 0.87105 0.94033 0.91884 0.82738 0.89387 0.91791 0.89451 0.91795 0.90767 0.89990 0.92060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.32 13.67 55.48 0.76 -23.56 16 2 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 3 Si 0.94 20.33 29.55 -169.99 -5.02 15.31 16 4 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 5 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 6 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 7 C -0.39 -10.64 9.49 30.88 0.29 -10.35 16 8 H 0.09 2.31 5.20 -52.48 -0.27 2.04 16 9 O -0.18 -4.78 8.93 0.03 0.00 -4.78 16 10 C 0.16 3.73 6.61 -39.11 -0.26 3.48 16 11 C -0.23 -5.14 9.17 -39.40 -0.36 -5.50 16 12 C -0.08 -1.42 10.04 -39.61 -0.40 -1.82 16 13 C -0.21 -3.82 10.04 -39.53 -0.40 -4.21 16 14 C -0.06 -1.12 9.66 -39.61 -0.38 -1.51 16 15 C -0.16 -3.30 5.41 -104.44 -0.56 -3.86 16 16 C 0.12 2.31 5.33 -4.98 -0.03 2.28 16 17 N -0.67 -12.63 6.60 -107.13 -0.71 -13.34 16 18 C 0.07 1.09 4.16 -66.90 -0.28 0.81 16 19 C -0.16 -2.69 7.72 -25.77 -0.20 -2.89 16 20 C -0.14 -1.92 8.09 -25.77 -0.21 -2.13 16 21 C -0.13 -1.78 7.88 -25.92 -0.20 -1.98 16 22 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 23 H 0.13 2.75 5.64 -52.49 -0.30 2.45 16 24 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 25 H 0.10 1.56 8.06 -52.48 -0.42 1.14 16 26 H 0.11 1.76 8.04 -52.49 -0.42 1.34 16 27 H 0.04 0.91 7.86 -51.93 -0.41 0.50 16 28 H 0.06 1.08 7.99 -51.93 -0.41 0.67 16 29 H 0.35 7.46 8.12 -39.29 -0.32 7.14 16 30 H 0.09 1.34 7.88 -51.93 -0.41 0.93 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.09 1.63 7.83 -51.93 -0.41 1.22 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 302.89 15.07 4.56 4.56 Total: -1.00 -28.20 302.89 -8.53 -36.74 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -5.04 Total: 11.76 kcal Atomic # 6 Polarization: -23.60 SS G_CDS: -3.08 Total: -26.68 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: 0.05 Total: -36.90 kcal Atomic # 8 Polarization: -4.78 SS G_CDS: 0.00 Total: -4.78 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -28.20 -8.53 -36.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052208077.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.961 kcal (2) G-P(sol) polarization free energy of solvation -28.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds