Wall clock time and date at job start Mon Mar 30 2020 06:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00253 * 2 1 4 4 H 1.48497 * 109.47038 * 240.00127 * 3 2 1 5 5 H 1.48500 * 109.46757 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47531 * 119.99720 * 3 2 1 7 7 C 1.37880 * 120.00153 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00496 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99956 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47239 * 180.02562 * 9 7 2 11 11 C 1.52990 * 109.47105 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47108 * 179.97438 * 11 10 9 13 13 N 1.46508 * 109.47135 * 179.97438 * 12 11 10 14 14 C 1.34780 * 119.99852 * 179.97438 * 13 12 11 15 15 O 1.21557 * 120.00061 * 0.02562 * 14 13 12 16 16 C 1.47845 * 119.99555 * 180.02562 * 14 13 12 17 17 C 1.39575 * 120.13807 * 180.02562 * 16 14 13 18 18 C 1.37966 * 119.85100 * 179.97438 * 17 16 14 19 19 C 1.38359 * 120.14194 * 359.97438 * 18 17 16 20 20 C 1.38356 * 120.29572 * 0.04433 * 19 18 17 21 21 C 1.37965 * 120.14354 * 359.95888 * 20 19 18 22 22 H 0.96994 * 120.00056 * 0.02562 * 1 2 3 23 23 H 1.08996 * 109.46862 * 60.00119 * 9 7 2 24 24 H 1.09004 * 109.46585 * 300.00049 * 9 7 2 25 25 H 1.09002 * 109.47291 * 59.99676 * 10 9 7 26 26 H 1.09007 * 109.46700 * 300.00025 * 10 9 7 27 27 H 1.09002 * 109.47206 * 59.99751 * 11 10 9 28 28 H 1.08999 * 109.47620 * 299.99967 * 11 10 9 29 29 H 1.08996 * 109.46951 * 60.00477 * 12 11 10 30 30 H 1.08996 * 109.47668 * 300.00067 * 12 11 10 31 31 H 0.97002 * 119.99932 * 0.02562 * 13 12 11 32 32 H 1.07998 * 120.08057 * 359.70005 * 17 16 14 33 33 H 1.08000 * 119.93085 * 179.97438 * 18 17 16 34 34 H 1.08003 * 119.85292 * 180.02562 * 19 18 17 35 35 H 1.08001 * 119.93259 * 179.97438 * 20 19 18 36 36 H 1.08003 * 120.07139 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0018 11 6 1.4803 -4.9871 0.0025 12 6 2.4746 -6.1500 0.0031 13 7 1.7420 -7.4188 0.0043 14 6 2.4159 -8.5860 0.0046 15 8 3.6315 -8.5860 0.0042 16 6 1.6766 -9.8663 0.0052 17 6 2.3715 -11.0768 0.0060 18 6 1.6757 -12.2681 0.0072 19 6 0.2921 -12.2645 0.0081 20 6 -0.4028 -11.0681 0.0070 21 6 0.2810 -9.8698 0.0057 22 1 -0.4850 0.8400 -0.0004 23 1 0.6248 -2.5571 -0.8897 24 1 0.6241 -2.5567 0.8903 25 1 2.8713 -3.6040 0.8922 26 1 2.8726 -3.6047 -0.8878 27 1 0.8540 -5.0455 -0.8877 28 1 0.8533 -5.0442 0.8922 29 1 3.1011 -6.0918 0.8931 30 1 3.1013 -6.0928 -0.8868 31 1 0.7720 -7.4188 0.0043 32 1 3.4515 -11.0810 0.0012 33 1 2.2121 -13.2055 0.0074 34 1 -0.2479 -13.1999 0.0094 35 1 -1.4828 -11.0722 0.0073 36 1 -0.2626 -8.9366 0.0053 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062721607.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:01 Heat of formation + Delta-G solvation = -37.286567 kcal Electronic energy + Delta-G solvation = -16382.825861 eV Core-core repulsion = 13637.810464 eV Total energy + Delta-G solvation = -2745.015397 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.27704 -38.43620 -35.88558 -33.92448 -32.33178 -31.32312 -31.19193 -28.53957 -25.24405 -23.69838 -22.78699 -21.71374 -20.78987 -19.89689 -18.19883 -16.43163 -16.19305 -15.96992 -15.63952 -15.06492 -14.71870 -14.44354 -14.43671 -13.89447 -13.49870 -13.02460 -12.59334 -12.50472 -11.97891 -11.82388 -11.63949 -11.38741 -11.10986 -10.72064 -10.65360 -10.49652 -10.02841 -9.70461 -9.34600 -9.31749 -9.30106 -9.06670 -8.98299 -8.34607 -6.00092 -4.02327 0.59484 1.04737 2.74538 3.13844 3.33980 3.38013 3.41022 3.64791 4.46113 4.49306 4.50782 4.61646 4.84262 5.04893 5.17020 5.25821 5.35273 5.38573 5.50105 5.65746 5.72947 6.00444 6.04598 6.07988 6.11050 6.13150 6.35344 6.46983 6.57028 6.70681 6.84626 7.11047 7.46896 7.66887 7.81112 7.99981 8.15482 8.42903 9.04725 9.61824 11.11290 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.059053 B = 0.002978 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.039485 B = 9400.952119 C = 9843.941472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.108 4.108 11 C -0.130 4.130 12 C 0.117 3.883 13 N -0.722 5.722 14 C 0.553 3.447 15 O -0.540 6.540 16 C -0.132 4.132 17 C -0.062 4.062 18 C -0.129 4.129 19 C -0.098 4.098 20 C -0.128 4.128 21 C -0.087 4.087 22 H 0.261 0.739 23 H 0.015 0.985 24 H 0.015 0.985 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.399 0.601 32 H 0.136 0.864 33 H 0.129 0.871 34 H 0.126 0.874 35 H 0.129 0.871 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.532 -23.800 0.012 23.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.146 4.146 11 C -0.168 4.168 12 C -0.006 4.006 13 N -0.373 5.373 14 C 0.340 3.660 15 O -0.419 6.419 16 C -0.135 4.135 17 C -0.081 4.081 18 C -0.147 4.147 19 C -0.117 4.117 20 C -0.146 4.146 21 C -0.106 4.106 22 H 0.070 0.930 23 H 0.034 0.966 24 H 0.034 0.966 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.235 0.765 32 H 0.154 0.846 33 H 0.147 0.853 34 H 0.144 0.856 35 H 0.147 0.853 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.803 -23.634 0.012 23.647 hybrid contribution -0.144 0.988 -0.001 0.998 sum -0.946 -22.646 0.011 22.666 Atomic orbital electron populations 1.69949 1.06065 1.26705 1.50924 1.25028 0.94856 0.99273 0.95331 0.86653 0.79582 0.83093 0.78655 1.20230 1.21305 1.20224 1.21246 0.93063 0.91141 1.50543 0.92704 1.19092 0.93968 0.91316 0.97171 1.21565 0.99168 0.93129 1.00730 1.21905 0.98103 0.94606 1.02186 1.21601 0.95284 0.81300 1.02390 1.46074 1.10545 1.06078 1.74641 1.18309 0.87281 0.83813 0.76642 1.90771 1.13447 1.87667 1.49980 1.20055 0.93793 0.93856 1.05789 1.21322 1.00928 0.90918 0.94922 1.21180 0.94400 0.98063 1.01100 1.21384 0.94459 0.98314 0.97495 1.21137 1.00323 0.92183 1.00930 1.21382 0.93055 0.98819 0.97308 0.92963 0.96624 0.96631 0.93059 0.93054 0.91785 0.91776 0.91389 0.91381 0.76544 0.84637 0.85346 0.85618 0.85316 0.85429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.52 -14.84 9.11 -34.44 -0.31 -15.15 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 10 C -0.11 -2.16 5.15 -26.74 -0.14 -2.30 16 11 C -0.13 -2.05 5.33 -26.74 -0.14 -2.20 16 12 C 0.12 1.71 5.67 -4.04 -0.02 1.68 16 13 N -0.72 -9.16 5.51 -61.25 -0.34 -9.50 16 14 C 0.55 7.77 7.77 -12.33 -0.10 7.68 16 15 O -0.54 -9.53 16.35 5.32 0.09 -9.44 16 16 C -0.13 -1.49 5.87 -104.97 -0.62 -2.11 16 17 C -0.06 -0.64 9.60 -39.18 -0.38 -1.02 16 18 C -0.13 -1.03 10.03 -39.64 -0.40 -1.42 16 19 C -0.10 -0.69 10.04 -39.49 -0.40 -1.09 16 20 C -0.13 -0.95 10.03 -39.64 -0.40 -1.35 16 21 C -0.09 -0.77 9.54 -39.19 -0.37 -1.15 16 22 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 23 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 24 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 26 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.40 3.98 6.51 -40.82 -0.27 3.71 16 32 H 0.14 1.43 7.65 -52.49 -0.40 1.03 16 33 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 34 H 0.13 0.57 8.06 -52.48 -0.42 0.15 16 35 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 36 H 0.13 0.89 6.41 -52.48 -0.34 0.55 16 LS Contribution 310.51 15.07 4.68 4.68 Total: -1.00 -32.99 310.51 -8.56 -41.55 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -5.20 Total: -1.30 kcal Atomic # 6 Polarization: -12.98 SS G_CDS: -3.51 Total: -16.49 kcal Atomic # 7 Polarization: -36.15 SS G_CDS: 0.40 Total: -35.75 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.09 Total: -9.44 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.99 -8.56 -41.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062721607.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.261 kcal (2) G-P(sol) polarization free energy of solvation -32.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds