Wall clock time and date at job start Mon Mar 30 2020 06:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00253 * 2 1 4 4 H 1.48497 * 109.47038 * 240.00127 * 3 2 1 5 5 H 1.48500 * 109.46757 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47531 * 119.99720 * 3 2 1 7 7 C 1.37880 * 120.00153 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00496 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99956 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47239 * 180.02562 * 9 7 2 11 11 C 1.52990 * 109.47105 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47108 * 179.97438 * 11 10 9 13 13 N 1.46508 * 109.47135 * 179.97438 * 12 11 10 14 14 C 1.34780 * 119.99852 * 179.97438 * 13 12 11 15 15 O 1.21557 * 120.00061 * 0.02562 * 14 13 12 16 16 C 1.47845 * 119.99555 * 180.02562 * 14 13 12 17 17 C 1.39575 * 120.13807 * 180.02562 * 16 14 13 18 18 C 1.37966 * 119.85100 * 179.97438 * 17 16 14 19 19 C 1.38359 * 120.14194 * 359.97438 * 18 17 16 20 20 C 1.38356 * 120.29572 * 0.04433 * 19 18 17 21 21 C 1.37965 * 120.14354 * 359.95888 * 20 19 18 22 22 H 0.96994 * 120.00056 * 0.02562 * 1 2 3 23 23 H 1.08996 * 109.46862 * 60.00119 * 9 7 2 24 24 H 1.09004 * 109.46585 * 300.00049 * 9 7 2 25 25 H 1.09002 * 109.47291 * 59.99676 * 10 9 7 26 26 H 1.09007 * 109.46700 * 300.00025 * 10 9 7 27 27 H 1.09002 * 109.47206 * 59.99751 * 11 10 9 28 28 H 1.08999 * 109.47620 * 299.99967 * 11 10 9 29 29 H 1.08996 * 109.46951 * 60.00477 * 12 11 10 30 30 H 1.08996 * 109.47668 * 300.00067 * 12 11 10 31 31 H 0.97002 * 119.99932 * 0.02562 * 13 12 11 32 32 H 1.07998 * 120.08057 * 359.70005 * 17 16 14 33 33 H 1.08000 * 119.93085 * 179.97438 * 18 17 16 34 34 H 1.08003 * 119.85292 * 180.02562 * 19 18 17 35 35 H 1.08001 * 119.93259 * 179.97438 * 20 19 18 36 36 H 1.08003 * 120.07139 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0018 11 6 1.4803 -4.9871 0.0025 12 6 2.4746 -6.1500 0.0031 13 7 1.7420 -7.4188 0.0043 14 6 2.4159 -8.5860 0.0046 15 8 3.6315 -8.5860 0.0042 16 6 1.6766 -9.8663 0.0052 17 6 2.3715 -11.0768 0.0060 18 6 1.6757 -12.2681 0.0072 19 6 0.2921 -12.2645 0.0081 20 6 -0.4028 -11.0681 0.0070 21 6 0.2810 -9.8698 0.0057 22 1 -0.4850 0.8400 -0.0004 23 1 0.6248 -2.5571 -0.8897 24 1 0.6241 -2.5567 0.8903 25 1 2.8713 -3.6040 0.8922 26 1 2.8726 -3.6047 -0.8878 27 1 0.8540 -5.0455 -0.8877 28 1 0.8533 -5.0442 0.8922 29 1 3.1011 -6.0918 0.8931 30 1 3.1013 -6.0928 -0.8868 31 1 0.7720 -7.4188 0.0043 32 1 3.4515 -11.0810 0.0012 33 1 2.2121 -13.2055 0.0074 34 1 -0.2479 -13.1999 0.0094 35 1 -1.4828 -11.0722 0.0073 36 1 -0.2626 -8.9366 0.0053 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062721607.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:01 Heat of formation + Delta-G solvation = -57.491715 kcal Electronic energy + Delta-G solvation = -16383.702022 eV Core-core repulsion = 13637.810464 eV Total energy + Delta-G solvation = -2745.891558 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.22144 -39.26203 -37.28780 -35.61039 -34.03103 -32.27019 -31.86331 -30.15247 -26.88350 -24.81636 -23.62294 -23.00078 -22.14201 -21.21097 -19.10895 -18.36432 -17.31142 -16.89262 -16.85017 -16.49395 -15.81807 -15.77789 -15.46773 -14.68144 -14.51613 -14.31956 -14.27556 -13.68367 -13.51204 -13.22990 -12.90551 -12.61436 -12.41662 -12.37612 -12.26026 -12.01257 -11.44177 -11.37164 -11.26984 -10.93400 -10.54232 -10.28625 -9.94811 -9.86957 -8.20036 -6.30575 -0.14297 0.41920 1.40091 1.42769 1.50692 1.82632 2.09799 2.41513 2.90711 3.13137 3.66150 3.87173 3.99423 4.03775 4.07500 4.25229 4.35845 4.47618 4.54076 4.62489 4.78186 4.82935 4.88975 5.06637 5.15815 5.20571 5.25595 5.33057 5.40578 5.46039 5.51396 5.54106 5.77617 5.87244 5.95747 6.26418 6.46780 6.86495 7.11517 7.38519 8.91469 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.059053 B = 0.002978 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.039485 B = 9400.952119 C = 9843.941472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.963 3.037 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.547 4.547 8 H 0.058 0.942 9 C 0.024 3.976 10 C -0.099 4.099 11 C -0.115 4.115 12 C 0.127 3.873 13 N -0.712 5.712 14 C 0.550 3.450 15 O -0.586 6.586 16 C -0.158 4.158 17 C -0.081 4.081 18 C -0.131 4.131 19 C -0.091 4.091 20 C -0.128 4.128 21 C -0.089 4.089 22 H 0.264 0.736 23 H -0.005 1.005 24 H -0.005 1.005 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.414 0.586 32 H 0.121 0.879 33 H 0.151 0.849 34 H 0.158 0.842 35 H 0.157 0.843 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.344 -25.007 0.014 25.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.787 3.213 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.585 4.585 8 H 0.076 0.924 9 C -0.013 4.013 10 C -0.137 4.137 11 C -0.153 4.153 12 C 0.003 3.997 13 N -0.364 5.364 14 C 0.339 3.661 15 O -0.468 6.468 16 C -0.161 4.161 17 C -0.100 4.100 18 C -0.148 4.148 19 C -0.109 4.109 20 C -0.146 4.146 21 C -0.108 4.108 22 H 0.073 0.927 23 H 0.013 0.987 24 H 0.013 0.987 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.252 0.748 32 H 0.139 0.861 33 H 0.169 0.831 34 H 0.176 0.824 35 H 0.175 0.825 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -1.641 -24.851 0.014 24.905 hybrid contribution 0.041 1.284 -0.001 1.284 sum -1.599 -23.568 0.013 23.622 Atomic orbital electron populations 1.70072 1.07681 1.27825 1.51693 1.25957 0.95793 1.03263 0.94775 0.85540 0.78332 0.78288 0.79140 1.19284 1.20718 1.19274 1.21729 0.93560 0.92684 1.50545 0.92413 1.19008 0.94410 0.92805 0.95066 1.21374 0.98171 0.93333 1.00809 1.21682 0.97857 0.92713 1.03014 1.21317 0.94828 0.81765 1.01742 1.45909 1.11241 1.05158 1.74112 1.18814 0.86930 0.84891 0.75485 1.90736 1.15449 1.88341 1.52284 1.19939 0.94868 0.92503 1.08742 1.21393 1.00607 0.91867 0.96162 1.21464 0.95185 0.97918 1.00261 1.21828 0.94116 0.99652 0.95255 1.21532 1.01811 0.91600 0.99656 1.21605 0.91967 1.00452 0.96769 0.92743 0.98685 0.98693 0.92986 0.92979 0.90967 0.90959 0.92140 0.92129 0.74827 0.86069 0.83082 0.82414 0.82493 0.83873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.69 13.29 21.45 0.28 -56.41 16 2 C 0.00 -0.01 5.46 84.66 0.46 0.46 16 3 Si 0.96 44.53 29.54 68.60 2.03 46.55 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 7 C -0.55 -31.39 9.11 25.60 0.23 -31.16 16 8 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 9 C 0.02 1.26 4.97 29.85 0.15 1.41 16 10 C -0.10 -3.96 5.15 30.59 0.16 -3.80 16 11 C -0.11 -3.55 5.33 30.59 0.16 -3.39 16 12 C 0.13 3.68 5.67 86.38 0.49 4.17 16 13 N -0.71 -17.75 5.51 -465.96 -2.57 -20.32 16 14 C 0.55 15.71 7.77 86.79 0.67 16.38 16 15 O -0.59 -21.54 16.35 -3.89 -0.06 -21.60 16 16 C -0.16 -3.51 5.87 -20.09 -0.12 -3.63 16 17 C -0.08 -1.68 9.60 22.53 0.22 -1.46 16 18 C -0.13 -1.81 10.03 22.23 0.22 -1.59 16 19 C -0.09 -0.97 10.04 22.33 0.22 -0.75 16 20 C -0.13 -1.49 10.03 22.23 0.22 -1.27 16 21 C -0.09 -1.42 9.54 22.53 0.21 -1.20 16 22 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 23 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 24 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 25 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 27 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.41 7.71 6.51 -92.71 -0.60 7.11 16 32 H 0.12 2.74 7.65 -2.91 -0.02 2.71 16 33 H 0.15 1.32 8.06 -2.91 -0.02 1.29 16 34 H 0.16 0.69 8.06 -2.91 -0.02 0.66 16 35 H 0.16 0.93 8.06 -2.91 -0.02 0.91 16 36 H 0.14 1.68 6.41 -2.91 -0.02 1.66 16 Total: -1.00 -72.30 310.51 3.45 -68.85 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: 0.46 Total: 8.74 kcal Atomic # 6 Polarization: -29.14 SS G_CDS: 3.31 Total: -25.83 kcal Atomic # 7 Polarization: -74.44 SS G_CDS: -2.28 Total: -76.72 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: -0.06 Total: -21.60 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.55 kcal Total: -72.30 3.45 -68.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062721607.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.361 kcal (2) G-P(sol) polarization free energy of solvation -72.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds