Wall clock time and date at job start Mon Mar 30 2020 06:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99488 * 2 1 4 4 H 1.48501 * 109.47103 * 270.00011 * 3 2 1 5 5 H 1.48500 * 109.47298 * 30.00013 * 3 2 1 6 6 H 1.48496 * 109.47350 * 150.00162 * 3 2 1 7 7 C 1.37872 * 120.00468 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99947 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99820 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46939 * 179.97438 * 9 7 2 11 11 O 1.42898 * 109.47392 * 179.97438 * 10 9 7 12 12 C 1.35901 * 117.00584 * 179.97438 * 11 10 9 13 13 C 1.38649 * 119.94804 * 359.91904 * 12 11 10 14 14 C 1.38112 * 119.87639 * 180.02562 * 13 12 11 15 15 C 1.38182 * 119.99486 * 0.02562 * 14 13 12 16 16 C 1.38496 * 120.32836 * 0.02803 * 15 14 13 17 17 C 1.38162 * 119.88967 * 359.97438 * 16 15 14 18 18 C 1.51360 * 109.78342 * 179.97438 * 17 16 15 19 19 C 1.54354 * 105.24989 * 342.77396 * 18 17 16 20 20 C 1.51385 * 130.35939 * 179.97438 * 16 15 14 21 21 H 1.08997 * 110.30030 * 316.11518 * 20 16 15 22 22 N 1.46903 * 110.30383 * 78.16620 * 20 16 15 23 23 H 0.96995 * 120.00729 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.47344 * 60.00185 * 9 7 2 25 25 H 1.09003 * 109.47334 * 299.99967 * 9 7 2 26 26 H 1.09003 * 109.46946 * 59.99948 * 10 9 7 27 27 H 1.09003 * 109.47086 * 300.00126 * 10 9 7 28 28 H 1.08005 * 120.06323 * 0.03792 * 13 12 11 29 29 H 1.07998 * 120.00688 * 179.97438 * 14 13 12 30 30 H 1.07997 * 119.83458 * 180.02562 * 15 14 13 31 31 H 1.09002 * 110.30579 * 101.74658 * 18 17 16 32 32 H 1.08997 * 110.30469 * 223.80473 * 18 17 16 33 33 H 1.08997 * 110.82225 * 144.60994 * 19 18 17 34 34 H 1.08996 * 110.82468 * 268.16348 * 19 18 17 35 35 H 1.00897 * 110.99712 * 298.54817 * 22 20 16 36 36 H 1.00903 * 110.99913 * 62.50601 * 22 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4964 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5465 1.4404 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1938 -0.0011 10 6 4.0217 -2.6362 -0.0010 11 8 5.4507 -2.6362 -0.0021 12 6 6.0678 -3.8470 -0.0017 13 6 5.3118 -5.0092 0.0016 14 6 5.9405 -6.2389 0.0026 15 6 7.3205 -6.3092 0.0010 16 6 8.0798 -5.1509 -0.0012 17 6 7.4554 -3.9184 -0.0022 18 6 8.4944 -2.8178 -0.0038 19 6 9.8077 -3.4985 0.4372 20 6 9.5820 -4.9634 -0.0028 21 1 10.0491 -5.6468 0.7063 22 7 10.1216 -5.1823 -1.3514 23 1 -0.4851 0.8399 0.0004 24 1 3.8752 -0.6801 0.8889 25 1 3.8746 -0.6797 -0.8911 26 1 3.6580 -3.1503 -0.8907 27 1 3.6587 -3.1499 0.8893 28 1 4.2332 -4.9530 0.0031 29 1 5.3537 -7.1456 0.0056 30 1 7.8095 -7.2722 0.0014 31 1 8.6022 -2.4009 -1.0052 32 1 8.2179 -2.0355 0.7031 33 1 10.6624 -3.0640 -0.0812 34 1 9.9342 -3.4328 1.5178 35 1 9.9397 -6.1239 -1.6652 36 1 9.7519 -4.5062 -2.0029 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062798618.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:04 Heat of formation + Delta-G solvation = -27.339394 kcal Electronic energy + Delta-G solvation = -17355.242255 eV Core-core repulsion = 14610.658200 eV Total energy + Delta-G solvation = -2744.584056 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.51770 -38.30715 -35.75572 -33.41435 -32.44899 -30.86668 -29.51171 -28.73139 -25.97650 -25.18071 -22.30658 -21.55118 -20.53197 -19.98355 -17.64561 -16.73074 -16.50940 -15.74966 -15.46615 -15.36760 -14.66976 -14.36474 -14.08165 -13.71719 -13.49450 -12.92683 -12.77731 -12.49783 -12.02939 -11.73340 -11.65878 -11.32430 -11.13523 -10.99509 -10.86457 -10.78641 -10.21811 -10.03641 -9.85047 -9.38258 -9.15505 -8.65537 -8.55257 -7.90408 -6.16543 -4.17773 1.31987 1.54744 3.26050 3.33459 3.38653 3.71563 3.77406 4.30736 4.36242 4.37661 4.67268 4.94937 5.02263 5.07821 5.17538 5.19188 5.31376 5.57608 5.66620 5.75176 5.83609 5.85559 5.87365 5.94739 6.04630 6.16949 6.35572 6.47404 6.50787 6.57414 6.82888 6.89434 7.05978 7.19144 7.19633 7.58933 7.86200 8.35417 8.83834 9.43636 10.95994 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.035466 B = 0.004757 C = 0.004284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.298505 B = 5884.716018 C = 6534.865076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.073 3.927 3 Si 0.880 3.120 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.263 1.263 7 C -0.528 4.528 8 H 0.074 0.926 9 C -0.008 4.008 10 C 0.072 3.928 11 O -0.318 6.318 12 C 0.155 3.845 13 C -0.206 4.206 14 C -0.082 4.082 15 C -0.150 4.150 16 C -0.108 4.108 17 C -0.130 4.130 18 C -0.075 4.075 19 C -0.115 4.115 20 C 0.132 3.868 21 H 0.088 0.912 22 N -0.832 5.832 23 H 0.266 0.734 24 H 0.027 0.973 25 H 0.023 0.977 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.134 0.866 29 H 0.124 0.876 30 H 0.115 0.885 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.341 0.659 36 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.947 -10.578 -0.416 20.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.129 4.129 3 Si 0.707 3.293 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.188 1.188 7 C -0.566 4.566 8 H 0.092 0.908 9 C -0.045 4.045 10 C -0.003 4.003 11 O -0.231 6.231 12 C 0.108 3.892 13 C -0.225 4.225 14 C -0.100 4.100 15 C -0.169 4.169 16 C -0.111 4.111 17 C -0.132 4.132 18 C -0.112 4.112 19 C -0.153 4.153 20 C 0.020 3.980 21 H 0.106 0.894 22 N -0.360 5.360 23 H 0.076 0.924 24 H 0.046 0.954 25 H 0.041 0.959 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.152 0.848 29 H 0.142 0.858 30 H 0.133 0.867 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.103 0.897 34 H 0.096 0.904 35 H 0.154 0.846 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 18.593 -10.093 -0.090 21.156 hybrid contribution -1.208 0.437 -0.282 1.315 sum 17.385 -9.656 -0.372 19.890 Atomic orbital electron populations 1.69887 1.06283 1.27262 1.50115 1.24927 0.94755 0.99205 0.94060 0.86758 0.80451 0.83281 0.78786 1.20033 1.21124 1.18773 1.20837 0.88325 0.94949 1.52467 0.90767 1.19575 0.96916 0.90176 0.97861 1.23089 0.74715 1.02000 1.00447 1.86132 1.23917 1.25907 1.87124 1.18786 0.90787 0.85385 0.94271 1.21332 1.00694 0.92150 1.08348 1.20822 0.94154 0.97052 0.97976 1.20409 0.93443 0.97055 1.05998 1.21273 0.97256 0.92756 0.99776 1.19815 0.90730 0.96178 1.06444 1.20920 0.91754 0.96355 1.02208 1.22422 0.97668 0.93702 1.01513 1.20941 0.87301 0.97892 0.91823 0.89387 1.59146 1.64406 1.08864 1.03540 0.92409 0.95433 0.95873 0.92587 0.92522 0.84818 0.85848 0.86671 0.90597 0.90387 0.89666 0.90439 0.84621 0.84496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.20 13.96 55.43 0.77 -26.43 16 2 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 3 Si 0.88 21.51 27.47 -169.99 -4.67 16.84 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.26 -6.25 6.54 56.52 0.37 -5.88 16 7 C -0.53 -14.85 9.66 -34.44 -0.33 -15.18 16 8 H 0.07 2.21 7.99 -52.48 -0.42 1.79 16 9 C -0.01 -0.19 4.41 -27.88 -0.12 -0.31 16 10 C 0.07 1.47 4.68 37.16 0.17 1.65 16 11 O -0.32 -6.22 10.08 -19.43 -0.20 -6.42 16 12 C 0.15 2.63 6.69 -39.17 -0.26 2.37 16 13 C -0.21 -3.18 9.03 -39.48 -0.36 -3.53 16 14 C -0.08 -1.05 10.04 -39.65 -0.40 -1.45 16 15 C -0.15 -1.80 10.04 -39.51 -0.40 -2.19 16 16 C -0.11 -1.35 5.74 -104.22 -0.60 -1.95 16 17 C -0.13 -1.92 6.11 -104.06 -0.64 -2.55 16 18 C -0.08 -0.94 6.70 -26.85 -0.18 -1.12 16 19 C -0.12 -1.15 6.73 -25.17 -0.17 -1.32 16 20 C 0.13 1.34 4.01 -67.68 -0.27 1.07 16 21 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 22 N -0.83 -7.58 9.30 -4.64 -0.04 -7.62 16 23 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 24 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16 25 H 0.02 0.56 7.57 -51.93 -0.39 0.16 16 26 H 0.06 1.11 7.66 -51.93 -0.40 0.72 16 27 H 0.06 1.13 7.65 -51.93 -0.40 0.73 16 28 H 0.13 2.03 6.29 -52.48 -0.33 1.70 16 29 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 30 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 31 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.08 0.77 8.09 -51.93 -0.42 0.35 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.34 2.72 9.06 -39.29 -0.36 2.36 16 36 H 0.34 3.14 8.98 -39.29 -0.35 2.79 16 LS Contribution 298.34 15.07 4.50 4.50 Total: -1.00 -30.34 298.34 -8.43 -38.77 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -5.14 Total: 2.90 kcal Atomic # 6 Polarization: -18.90 SS G_CDS: -3.65 Total: -22.54 kcal Atomic # 7 Polarization: -34.78 SS G_CDS: 0.73 Total: -34.05 kcal Atomic # 8 Polarization: -6.22 SS G_CDS: -0.20 Total: -6.42 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.34 -8.43 -38.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062798618.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.430 kcal (2) G-P(sol) polarization free energy of solvation -30.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds